>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 113/136 (83%)
 Strand = Plus / Plus

                                                                            
Query: 290      tgaagatgaaggggctcggccttgcctgtttgcttcttgcccttgtgccacgggtggtac 349
                |||||||||||| ||| |  || || ||||||||||||  | |||| ||||  ||||| |
Sbjct: 28919581 tgaagatgaaggcgcttgagctcgcgtgtttgcttcttatcattgtaccacaagtggttc 28919640

                                                                            
Query: 350      ttgggacgcatgatgtgtatattgttaccatggaaggcgacccggttgtgagctacacag 409
                |||| || ||||||||||| |||||||| ||||||||||| || ||||| ||||||| ||
Sbjct: 28919641 ttggaacacatgatgtgtacattgttacaatggaaggcgaacctgttgtcagctacagag 28919700

                                
Query: 410      gcggagtcgaaggatt 425
                | ||||| ||||||||
Sbjct: 28919701 gtggagttgaaggatt 28919716

>dbj|AP004278.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0468G03
          Length = 143918

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 113/136 (83%)
 Strand = Plus / Plus

                                                                         
Query: 290   tgaagatgaaggggctcggccttgcctgtttgcttcttgcccttgtgccacgggtggtac 349
             |||||||||||| ||| |  || || ||||||||||||  | |||| ||||  ||||| |
Sbjct: 69625 tgaagatgaaggcgcttgagctcgcgtgtttgcttcttatcattgtaccacaagtggttc 69684

                                                                         
Query: 350   ttgggacgcatgatgtgtatattgttaccatggaaggcgacccggttgtgagctacacag 409
             |||| || ||||||||||| |||||||| ||||||||||| || ||||| ||||||| ||
Sbjct: 69685 ttggaacacatgatgtgtacattgttacaatggaaggcgaacctgttgtcagctacagag 69744

                             
Query: 410   gcggagtcgaaggatt 425
             | ||||| ||||||||
Sbjct: 69745 gtggagttgaaggatt 69760

>dbj|AK102835.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033109K01, full
           insert sequence
          Length = 2984

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 113/136 (83%)
 Strand = Plus / Plus

                                                                       
Query: 290 tgaagatgaaggggctcggccttgcctgtttgcttcttgcccttgtgccacgggtggtac 349
           |||||||||||| ||| |  || || ||||||||||||  | |||| ||||  ||||| |
Sbjct: 309 tgaagatgaaggcgcttgagctcgcgtgtttgcttcttatcattgtaccacaagtggttc 368

                                                                       
Query: 350 ttgggacgcatgatgtgtatattgttaccatggaaggcgacccggttgtgagctacacag 409
           |||| || ||||||||||| |||||||| ||||||||||| || ||||| ||||||| ||
Sbjct: 369 ttggaacacatgatgtgtacattgttacaatggaaggcgaacctgttgtcagctacagag 428

                           
Query: 410 gcggagtcgaaggatt 425
           | ||||| ||||||||
Sbjct: 429 gtggagttgaaggatt 444

>ref|XM_530975.1| PREDICTED: Pan troglodytes LOC463070 (LOC463070), mRNA
          Length = 525

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 215 ggggcggcggccgagctgctgcgg 238
           ||||||||||||||||||||||||
Sbjct: 173 ggggcggcggccgagctgctgcgg 196

>emb|AL450344.4| Human DNA sequence from clone RP11-136K14 on chromosome 6 Contains
             three novel genes, the 5' end of a novel gene (contains
             FLJ31738 and KIAA1209) and a CpG island, complete sequence
          Length = 150005

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 215   ggggcggcggccgagctgctgcgg 238
             ||||||||||||||||||||||||
Sbjct: 54908 ggggcggcggccgagctgctgcgg 54931

>emb|AJ332011.1|HSA332011 Homo sapiens genomic sequence surrounding NotI site, clone
           NR1-WM7RS
          Length = 1009

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 215 ggggcggcggccgagctgctgcgg 238
           ||||||||||||||||||||||||
Sbjct: 136 ggggcggcggccgagctgctgcgg 113

>emb|AL023096.1|HS398I9 Human DNA sequence from clone RP3-398I9 on chromosome 1p34.3-36.13
             Contains the 3' end of the RUNX3 gene for runt-related
             transcription factor 3 and a CpG island, complete sequence
          Length = 95241

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 178   ccccgggggcggccggcgcgggc 200
             |||||||||||||||||||||||
Sbjct: 64965 ccccgggggcggccggcgcgggc 64987

>emb|AJ326186.1|HSA326186 Homo sapiens genomic sequence surrounding NotI site, clone
           NL1-CN14C
          Length = 644

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 178 ccccgggggcggccggcgcgggc 200
           |||||||||||||||||||||||
Sbjct: 216 ccccgggggcggccggcgcgggc 194

>emb|AJ001432.1|HSAML25UT Homo sapiens mRNA for AML2 protein 5' untranslated region
          Length = 410

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 178 ccccgggggcggccggcgcgggc 200
           |||||||||||||||||||||||
Sbjct: 364 ccccgggggcggccggcgcgggc 342

>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 195     gcgggctgaccgaccgacgcggggcggcgg 224
               |||| ||||||||||||||||| |||||||
Sbjct: 1865402 gcggactgaccgaccgacgcggagcggcgg 1865431

>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome
          Length = 2843201

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 295     atgaaggggctcggccttgcct 316
               ||||||||||||||||||||||
Sbjct: 2224446 atgaaggggctcggccttgcct 2224467

>ref|XM_388748.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG08572.1)
            partial mRNA
          Length = 3708

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 304  ctcggccttgcctgtttgctt 324
            |||||||||||||||||||||
Sbjct: 2421 ctcggccttgcctgtttgctt 2401

>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 181  cgggggcggccggcgcgggct 201
            |||||||||||||||||||||
Sbjct: 6970 cgggggcggccggcgcgggct 6950

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 182     gggggcggccggcgcgggctg 202
               |||||||||||||||||||||
Sbjct: 1532707 gggggcggccggcgcgggctg 1532687



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 147    ccacctcctccagcctcggcgcgcc 171
              |||||||||||||| ||||||||||
Sbjct: 701280 ccacctcctccagcgtcggcgcgcc 701256

>ref|XM_869354.1| PREDICTED: Bos taurus similar to Metabotropic glutamate receptor 5
           precursor (mGluR5) (LOC617153), mRNA
          Length = 1026

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 177 tccccgggggcggccggcgcgggc 200
           |||||||||||| |||||||||||
Sbjct: 487 tccccgggggcgcccggcgcgggc 510

>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 206    gaccgacgcggggcggcggc 225
              ||||||||||||||||||||
Sbjct: 377590 gaccgacgcggggcggcggc 377609

>gb|AC136225.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0022L07, complete sequence
          Length = 142134

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   cggcggccgagctgctgcgg 238
             ||||||||||||||||||||
Sbjct: 87311 cggcggccgagctgctgcgg 87330

>gb|AC117227.3| Mus musculus BAC clone RP23-380C5 from 13, complete sequence
          Length = 190816

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    ggcggcggccgagctgctgc 236
              ||||||||||||||||||||
Sbjct: 122632 ggcggcggccgagctgctgc 122613

>ref|XM_788889.1| PREDICTED: Strongylocentrotus purpuratus similar to
           sulfotransferase family, cytosolic, 1B, member 1
           (LOC589239), mRNA
          Length = 942

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 359 atgatgtgtatattgttacc 378
           ||||||||||||||||||||
Sbjct: 152 atgatgtgtatattgttacc 171

>ref|XM_785615.1| PREDICTED: Strongylocentrotus purpuratus similar to
           sulfotransferase family, cytosolic, 1B, member 1
           (LOC585804), mRNA
          Length = 1110

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 359 atgatgtgtatattgttacc 378
           ||||||||||||||||||||
Sbjct: 320 atgatgtgtatattgttacc 339

>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16
          Length = 343473

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 181    cgggggcggccggcgcgggc 200
              ||||||||||||||||||||
Sbjct: 304618 cgggggcggccggcgcgggc 304599

>emb|BX640436.1| Bordetella parapertussis strain 12822, complete genome; segment 14/14
          Length = 255260

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   cgggggcggccggcgcgggc 200
             ||||||||||||||||||||
Sbjct: 96989 cgggggcggccggcgcgggc 96970

>emb|AL732594.5| Mouse DNA sequence from clone RP24-189G18 on chromosome 4 Contains the
              Prpf4 gene for PRP4 pre-mRNA processing factor 4 homolog
              (yeast), three novel genes, the Bspry gene for B-box and
              SPRY domain containing protein, the Alad gene for delta
              aminolevulinate dehydratase, the Pole3 gene for polymerase
              (DNA directed) epsilon 3 (p17 subunit) and three CpG
              islands, complete sequence
          Length = 145776

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 247    gcttgggctcccaggttctgcagt 270
              ||||||||| ||||||||||||||
Sbjct: 108588 gcttgggctgccaggttctgcagt 108565

>gb|AC133492.10| Rattus norvegicus clone rp32-478o16, complete sequence
          Length = 170268

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   ggcggcggccgagctgctgc 236
             ||||||||||||||||||||
Sbjct: 70658 ggcggcggccgagctgctgc 70677

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 218     gcggcggccgagctgctgcg 237
               ||||||||||||||||||||
Sbjct: 4674031 gcggcggccgagctgctgcg 4674050

>gb|AF003353.1|AF003353 Mus musculus 5-aminolevulinate dehydratase-like (ALAD) gene, partial
            sequence
          Length = 12173

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 247  gcttgggctcccaggttctgcagt 270
            ||||||||| ||||||||||||||
Sbjct: 7621 gcttgggctgccaggttctgcagt 7644

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 219      cggcggccgagctgctgcgg 238
                ||||||||||||||||||||
Sbjct: 14227978 cggcggccgagctgctgcgg 14227997

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 308     gccttgcctgtttgcttctt 327
               ||||||||||||||||||||
Sbjct: 7593858 gccttgcctgtttgcttctt 7593839

>dbj|AP002855.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:OSJNBa0086P08
          Length = 145312

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 308  gccttgcctgtttgcttctt 327
            ||||||||||||||||||||
Sbjct: 4434 gccttgcctgtttgcttctt 4415

>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0708G02
          Length = 168976

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 308    gccttgcctgtttgcttctt 327
              ||||||||||||||||||||
Sbjct: 142650 gccttgcctgtttgcttctt 142631

>gb|AF104824.1|MMTPMT1 Mus musculus thiopurine methyltransferase (Tpmt) gene, exon 1
          Length = 717

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 217 ggcggcggccgagctgctgc 236
           ||||||||||||||||||||
Sbjct: 83  ggcggcggccgagctgctgc 64

>gb|BC023917.1| Mus musculus amine oxidase, flavin containing 1, mRNA (cDNA clone
           MGC:38211 IMAGE:5323227), complete cds
          Length = 4263

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 217 ggcggcggccgagctgctgc 236
           ||||||||||||||||||||
Sbjct: 14  ggcggcggccgagctgctgc 33

>gb|AC096628.14| Mus musculus strain C57BL/6J chromosome 13 clone rp23-81n4, complete
              sequence
          Length = 194818

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 217    ggcggcggccgagctgctgc 236
              ||||||||||||||||||||
Sbjct: 117186 ggcggcggccgagctgctgc 117205

>ref|NM_172262.1| Mus musculus amine oxidase, flavin containing 1 (Aof1), mRNA
          Length = 4263

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 217 ggcggcggccgagctgctgc 236
           ||||||||||||||||||||
Sbjct: 14  ggcggcggccgagctgctgc 33


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,003,943
Number of Sequences: 3902068
Number of extensions: 3003943
Number of successful extensions: 62544
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61964
Number of HSP's gapped (non-prelim): 580
length of query: 456
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 434
effective length of database: 17,147,199,772
effective search space: 7441884701048
effective search space used: 7441884701048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)