ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl54d09 |
|---|---|
| Clone Library Name | barley_pub |
>PERT_BORPA (P24328) Pertactin precursor (P.95) [Contains: Outer membrane| protein P.70] Length = 922 Score = 36.2 bits (82), Expect = 0.040 Identities = 18/42 (42%), Positives = 23/42 (54%) Frame = +3 Query: 66 PPSQKPHAPSSSPQPGPRACRPPLLVQPARAVASESRRPLHP 191 PP+ KP AP PQPGP+ +PP QP + R+P P Sbjct: 568 PPAPKP-APQPGPQPGPQPPQPPQPPQPPQPPQPPQRQPEAP 608
>PERQ1_MOUSE (Q99MR1) PERQ amino acid rich with GYF domain protein 1| Length = 1011 Score = 32.3 bits (72), Expect = 0.58 Identities = 24/71 (33%), Positives = 27/71 (38%), Gaps = 12/71 (16%) Frame = -2 Query: 256 SWLGKRETEDGDTERR----PR*RESGWRGRRDSEATARAGWTSSGGRHA------RGP- 110 +W RE ++ D R PR WR AGW G R RG Sbjct: 167 NWRSLREEQEDDGSWRLGAGPRRDGDRWRSTSPDGGPRSAGWREHGERRRKFDFDLRGER 226 Query: 109 -GCGEEDGA*G 80 GCGEEDG G Sbjct: 227 GGCGEEDGRVG 237
>EXTN_MAIZE (P14918) Extensin precursor (Proline-rich glycoprotein)| Length = 267 Score = 32.3 bits (72), Expect = 0.58 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = +3 Query: 63 KPPSQKPHAPSSSPQPGPRACRPPLLVQPARAVASESRRPLHP 191 KPP+ KP P+ +P P P A +PP +P + S +P P Sbjct: 100 KPPTPKPTPPTYTPSPKPPATKPP-TPKPTPPTYTPSPKPPTP 141 Score = 32.3 bits (72), Expect = 0.58 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = +3 Query: 63 KPPSQKPHAPSSSPQPGPRACRPPLLVQPARAVASESRRPLHP 191 KPP+ KP P+ +P P P A +PP +P + S +P P Sbjct: 63 KPPTPKPTPPTYTPSPKPPATKPP-TPKPTPPTYTPSPKPPTP 104 Score = 32.3 bits (72), Expect = 0.58 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = +3 Query: 63 KPPSQKPHAPSSSPQPGPRACRPPLLVQPARAVASESRRPLHP 191 KPP+ KP P+ +P P P A +PP +P + S +P P Sbjct: 26 KPPTPKPTPPTYTPSPKPPASKPP-TPKPTPPTYTPSPKPPTP 67 Score = 32.0 bits (71), Expect = 0.76 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +3 Query: 63 KPPSQKPHAPSSSPQPGPRACRPP 134 KPP+ KP P+ +P P P A +PP Sbjct: 204 KPPTPKPTPPTYTPSPKPPATKPP 227 Score = 31.6 bits (70), Expect = 0.99 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +3 Query: 63 KPPSQKPHAPSSSPQPGPRACRPP 134 KPP+ KP P+ +P P P A +PP Sbjct: 225 KPPTPKPTPPTYTPTPKPPATKPP 248
>LGE1_ASHGO (Q75A59) Transcriptional regulatory protein LGE1| Length = 244 Score = 29.3 bits (64), Expect(2) = 0.92 Identities = 17/45 (37%), Positives = 21/45 (46%) Frame = -2 Query: 199 RESGWRGRRDSEATARAGWTSSGGRHARGPGCGEEDGA*GFWEGG 65 R G G R + R G+ SGGR+ G G G G G+ GG Sbjct: 61 RAEGSNGYR--QPYGRGGYRGSGGRYYGGYGYGHGGGGYGYGHGG 103 Score = 21.2 bits (43), Expect(2) = 0.92 Identities = 8/14 (57%), Positives = 9/14 (64%) Frame = -1 Query: 338 PHLAFHAGEPPPPP 297 P A + G PPPPP Sbjct: 8 PGNANNEGPPPPPP 21
>MYBPH_CHICK (Q05623) Myosin-binding protein H (MyBP-H) (H-protein) (86 kDa| protein) Length = 537 Score = 31.6 bits (70), Expect = 0.99 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = +3 Query: 66 PPSQKPHAPSSSPQPGPRACRPPLLVQPARAVASESRRPLH 188 PP ++ HAP+ + + P PP QPA A + P H Sbjct: 62 PPPKEEHAPAPAAETPPAPEHPPDAEQPAAPAAEHAPTPTH 102
>MBRL_HUMAN (Q4ZIN3) Membralin| Length = 620 Score = 31.6 bits (70), Expect = 0.99 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = +3 Query: 63 KPPSQKPHAPSSSPQPGPRACRPPLLVQPARAVAS 167 +PP+ P +P +S PGP A P LV A +VA+ Sbjct: 498 QPPALGPVSPGASGSPGPVAAAPSSLVAAAASVAA 532
>MYST3_HUMAN (Q92794) Histone acetyltransferase MYST3 (EC 2.3.1.48) (EC 2.3.1.-)| (MYST protein 3) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein 3) (Runt-related transcription factor-binding protein 2) (Monocytic leukemia zinc finger protein) (Zinc finger protei Length = 2004 Score = 31.2 bits (69), Expect = 1.3 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +3 Query: 66 PPSQKPHAPSSSPQPGPRACRPPLLVQPARAVASESRRPLHP 191 PP Q+P P PQP P+ PP QP + + ++P P Sbjct: 1654 PPPQQPQPPPPQPQPAPQP--PPPQQQPQQQPQPQPQQPPPP 1693
>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)| Length = 283 Score = 31.2 bits (69), Expect = 1.3 Identities = 14/45 (31%), Positives = 21/45 (46%) Frame = +3 Query: 63 KPPSQKPHAPSSSPQPGPRACRPPLLVQPARAVASESRRPLHPDS 197 KPP+ KP P +P P P +PP + S+ P++ S Sbjct: 157 KPPTPKPTPPVYTPNPKPPVTKPPTHTPSPKPPTSKPTPPVYTPS 201 Score = 30.0 bits (66), Expect = 2.9 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Frame = +3 Query: 63 KPPSQKPHAPSSSPQPGPRACRPPLLVQPARAVASE--SRRPLHP 191 KPP+ KP P +P P P PP + A++ + P HP Sbjct: 187 KPPTSKPTPPVYTPSPKPPKPSPPTYTPTPKPPATKPPTSTPTHP 231
>ACHA4_HUMAN (P43681) Neuronal acetylcholine receptor protein, alpha-4 subunit| precursor Length = 627 Score = 31.2 bits (69), Expect = 1.3 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = +3 Query: 66 PPSQKPHAPSSSPQPGPRACRPP 134 PP Q A +SP P P CRPP Sbjct: 430 PPQQPLEAEKASPHPSPGPCRPP 452
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 31.2 bits (69), Expect = 1.3 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Frame = -2 Query: 244 KRETEDGDTERR-----PR*RESGWRGRRDSEATARAGWTSSGGRHARGPGCGEEDGA 86 +R EDG+ ER+ PR E GWR R ++ A AG GR+ + E GA Sbjct: 1976 RRAEEDGEHERKEPAETPRPAE-GWRSPRSQKSAAAAGPQGKRGRNEQKVEAAAEAGA 2032
>SOX9_CANFA (Q7YRJ7) Transcription factor SOX-9| Length = 513 Score = 31.2 bits (69), Expect = 1.3 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = +3 Query: 66 PPSQKPHAPSSSPQPGPRACRPPLLVQPA 152 PP Q P AP PQ P+A + P QPA Sbjct: 348 PPQQSPQAPPQPPQAPPQAPQAPPQPQPA 376 Score = 29.3 bits (64), Expect = 4.9 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 11/53 (20%) Frame = +3 Query: 63 KPPSQKPHAPSSSPQPGPRACRP-------PLLVQPARA----VASESRRPLH 188 +PP P AP + PQP P +P PL +P +A + +E P H Sbjct: 358 QPPQAPPQAPQAPPQPQPAPPQPQAAHTLTPLSSEPGQAQRTHIKTEQLSPSH 410
>KCNN3_PIG (P58392) Small conductance calcium-activated potassium channel| protein 3 (SK3) Length = 724 Score = 30.8 bits (68), Expect = 1.7 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 14/60 (23%) Frame = +3 Query: 66 PPSQKPHAPSSSPQ--PGPRACRPPLLVQ------------PARAVASESRRPLHPDSLH 203 PP P AP ++PQ PGP PL +Q P +A +P+HP LH Sbjct: 36 PPPPPPPAPPAAPQQPPGPPLQPQPLQLQQQQQQQQQQPPHPLSQLAQLQSQPVHPGLLH 95
>PTN23_MOUSE (Q6PB44) Tyrosine-protein phosphatase non-receptor type 23 (EC| 3.1.3.48) Length = 1692 Score = 30.8 bits (68), Expect = 1.7 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 6/53 (11%) Frame = +3 Query: 69 PSQKPH---APSSSPQPGPRACRPPLLVQP---ARAVASESRRPLHPDSLHLG 209 P+ PH +P+ SP PGP RPP P R A+ P+S H G Sbjct: 1134 PTPSPHLVPSPAPSPGPGPVPSRPPTAEPPPCLRRGAAAADLLSSSPESQHGG 1186
>PERT_BORBR (Q03035) Pertactin precursor (P.94) [Contains: Outer membrane| protein P.68] Length = 916 Score = 30.8 bits (68), Expect = 1.7 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +3 Query: 66 PPSQKPHAPSSSPQPGPRACRPP 134 PP+ KP AP PQPGP+ +PP Sbjct: 571 PPAPKP-APQPGPQPGPQPPQPP 592
>PTN23_RAT (O88902) Tyrosine-protein phosphatase non-receptor type 23 (EC| 3.1.3.48) (His-domain-containing protein tyrosine phosphatase) (HD-PTP) (Protein tyrosine phosphatase TD14) (PTP-TD14) (Fragment) Length = 1499 Score = 30.8 bits (68), Expect = 1.7 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 6/53 (11%) Frame = +3 Query: 69 PSQKPH---APSSSPQPGPRACRPPLLVQP---ARAVASESRRPLHPDSLHLG 209 P+ PH +P+ SP PGP RPP P R A+ P+S H G Sbjct: 941 PAPSPHLVPSPAPSPGPGPVPSRPPTAEPPPCLRRGAAAADLLSSSPESQHGG 993
>POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1874 Score = 30.8 bits (68), Expect = 1.7 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 7/50 (14%) Frame = +3 Query: 66 PPSQKP-------HAPSSSPQPGPRACRPPLLVQPARAVASESRRPLHPD 194 PPSQ P APS+ P PG PLL P + ES P +P+ Sbjct: 631 PPSQPPLSQGPATQAPSAQPTPG-----EPLLAPPTTELKPESSNPNNPN 675
>NLP32_CAEEL (Q09982) Putative neuropeptide-like protein 32 precursor [Contains:| YGGWG-amide; GGW-amide; GG-amide; GYG-amide; GGGWG-amide; GGGW-amide; GGG-amide; GFYGG-amide; GW-amide] Length = 105 Score = 30.8 bits (68), Expect = 1.7 Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 10/66 (15%) Frame = -2 Query: 232 EDGDTERRPR*-RESGWRGRRDSEATARAGWTSSGGRH---------ARGPGCGEEDGA* 83 E+G + PR R GW GR GW GGR RG G G G Sbjct: 42 ENGAADESPRVKRYGGWGGR--------GGWGRGGGRGYGGRGGGWGGRGGGWGRGGGGR 93 Query: 82 GFWEGG 65 GF+ GG Sbjct: 94 GFYGGG 99
>HXB4_HUMAN (P17483) Homeobox protein Hox-B4 (Hox-2F) (Hox-2.6)| Length = 251 Score = 30.4 bits (67), Expect = 2.2 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 15/61 (24%) Frame = +3 Query: 66 PPSQKPHAPSSSPQPG--PRACRPP----LLVQPAR---AVASE------SRRPLHPDSL 200 PP P P P PG PRA PP LL +P + AV+S ++ PLHP Sbjct: 73 PPPPPPPPPPPPPPPGLSPRAPAPPPAGALLPEPGQRCEAVSSSPPPPPCAQNPLHPSPS 132 Query: 201 H 203 H Sbjct: 133 H 133
>HCN4_RAT (Q9JKA7) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 Length = 1198 Score = 30.4 bits (67), Expect = 2.2 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +3 Query: 66 PPSQKPHAPSSSPQPGPRACRPPLLVQPARAVAS 167 PP P PSSS P P AC P P+ + A+ Sbjct: 868 PPGLSPLLPSSSSSPPPGACSSPPAPTPSTSTAA 901
>AFF1_HUMAN (P51825) AF4/FMR2 family member 1 (AF-4 protein) (Proto-oncogene| AF4) (FEL protein) Length = 1210 Score = 30.4 bits (67), Expect = 2.2 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = +3 Query: 63 KPPSQKPHAPSSSPQPGPRAC-RPPLLVQPARAVASESRRPLHP 191 K S+ P AP +P PG R+C + P +P + +++P P Sbjct: 565 KSSSKAPRAPPEAPHPGKRSCQKSPAQQEPPQRQTVGTKQPKKP 608
>ADRB3_CANFA (O02662) Beta-3 adrenergic receptor (Beta-3 adrenoceptor) (Beta-3| adrenoreceptor) Length = 405 Score = 30.4 bits (67), Expect = 2.2 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%) Frame = +3 Query: 66 PPSQKPHAPSSSPQPGP-RACRPPLLV-----QPARAVASESRRPLHPDSLHLG 209 PP++ P A S S PGP R C P V +PAR + R L L +G Sbjct: 246 PPAESPPAASRSRSPGPARRCASPAAVPSDRLRPARLLPLREHRALRTLGLIVG 299
>YDC9_SCHPO (Q10172) Hypothetical protein C25G10.09c in chromosome I| Length = 1794 Score = 30.0 bits (66), Expect = 2.9 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Frame = +3 Query: 66 PPSQKPHAPSSSPQPG--PRACRPPLLVQPARAVASESRRPLHPDSLHLGRR 215 PP P PS+ P P P A PPL A +V + R +H G R Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDRSALLQQIHTGTR 1761
>NOP12_EMENI (Q5BDC8) Nucleolar protein 12| Length = 520 Score = 30.0 bits (66), Expect = 2.9 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Frame = -2 Query: 247 GKRETEDGDTERRPR*RESGWRGRRDSEATAR-AGWTSSGGRHAR 116 G R T DG + R R + G + ++DS + R A + ++GG+ A+ Sbjct: 473 GNRATADGSSRIRVRTKSRGSKAKKDSRSKKRAAAYKAAGGKKAK 517
>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein| Length = 1509 Score = 30.0 bits (66), Expect = 2.9 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 2/35 (5%) Frame = +3 Query: 69 PSQKPHAPSSSPQPGPRACR--PPLLVQPARAVAS 167 PS P APS +P P P A PPLL +A AS Sbjct: 955 PSGTPTAPSHAPAPAPMAATGLPPLLPAENKAFAS 989
>GLGB_STRAU (P52980) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 764 Score = 30.0 bits (66), Expect = 2.9 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = +3 Query: 66 PPSQKPHAPSSSPQPGPRACRPPLLVQPARAVASESRRPL 185 P P AP + P R PP V+PA A+A+E R L Sbjct: 17 PEPAAPAAPKGARAPRARRAAPPHGVRPAPALAAEERARL 56
>ZIPA_SALTY (P0A2N6) Cell division protein zipA homolog| Length = 328 Score = 30.0 bits (66), Expect = 2.9 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%) Frame = +3 Query: 63 KPPSQKPHAPSSSPQPGPRACRPP--LLVQPARAV 161 +PP Q+P PS +PQP + PP QPA V Sbjct: 138 QPPQQQPAPPSQAPQPVAQPAPPPSAQTFQPAEPV 172
>ZIPA_SALTI (P0A2N7) Cell division protein zipA homolog| Length = 328 Score = 30.0 bits (66), Expect = 2.9 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%) Frame = +3 Query: 63 KPPSQKPHAPSSSPQPGPRACRPP--LLVQPARAV 161 +PP Q+P PS +PQP + PP QPA V Sbjct: 138 QPPQQQPAPPSQAPQPVAQPAPPPSAQTFQPAEPV 172
>YTHD1_MOUSE (P59326) YTH domain protein 1 (Dermatomyositis associated with| cancer putative autoantigen 1 homolog) (DACA-1 homolog) Length = 559 Score = 30.0 bits (66), Expect = 2.9 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%) Frame = +3 Query: 60 NKPPSQKPHAPSSSPQPG----PRACRPPLLVQPARAVASESRRPLHP 191 NK P+ K AP +P P P+ PL VQP V + + P P Sbjct: 276 NKGPAPKASAPQQTPSPQAAPQPQQVAQPLPVQPPPLVQPQYQSPQQP 323
>HCN4_MOUSE (O70507) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Brain cyclic nucleotide gated channel 3) (BCNG-3) Length = 1186 Score = 30.0 bits (66), Expect = 2.9 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +3 Query: 66 PPSQKPHAPSSSPQPGPRACRPPLLVQPARAVAS 167 PP P PSSS P P AC P P+ + A+ Sbjct: 853 PPGLSPLLPSSSSSPPPGACGSPPAPTPSTSTAA 886
>VP09_BPAPS (Q9T1T9) Putative protein p9| Length = 366 Score = 29.6 bits (65), Expect = 3.8 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +1 Query: 226 RLLFPFFPAKIIVGPCRREASFSRGGGGGSPAWNAR 333 R LF +FPA I +GP + S+ G WNAR Sbjct: 179 RTLFTWFPANIFIGP---DTSYRFDDPGNGFEWNAR 211
>PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 504 Score = 29.6 bits (65), Expect = 3.8 Identities = 20/42 (47%), Positives = 24/42 (57%) Frame = -2 Query: 277 GGRGRRLSWLGKRETEDGDTERRPR*RESGWRGRRDSEATAR 152 GGRG S G+R DGD R R R+SGW RRD+ + R Sbjct: 348 GGRGGNYS--GRR---DGD---RDRDRDSGWSSRRDAPDSRR 381
>PALA_EMENI (P79020) pH-response regulator protein palA/RIM20| Length = 847 Score = 29.6 bits (65), Expect = 3.8 Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Frame = +3 Query: 63 KPPSQKPHAPSSSPQPGPRACRPPLLV-QPARAV 161 +PPSQ P S PQP P+ R PL QP R+V Sbjct: 776 QPPSQAI-PPQSQPQPQPQPLRTPLTAPQPTRSV 808
>CYSP1_ORYSA (Q7XR52) Cysteine protease 1 precursor (EC 3.4.22.-) (OsCP1)| Length = 490 Score = 29.6 bits (65), Expect = 3.8 Identities = 16/36 (44%), Positives = 19/36 (52%) Frame = -2 Query: 196 ESGWRGRRDSEATARAGWTSSGGRHARGPGCGEEDG 89 E G RG +EA ARA + RH RG G G +G Sbjct: 45 EHGVRGLERTEAEARAAYDLWLARHRRGGGGGSRNG 80
>APXL_HUMAN (Q13796) Apical-like protein (APXL protein)| Length = 1616 Score = 26.9 bits (58), Expect(2) = 4.5 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 4/41 (9%) Frame = -2 Query: 184 RGRRDSEATARAGWTS----SGGRHARGPGCGEEDGA*GFW 74 RG R E T R W S S G+ + GPGC +E A G W Sbjct: 358 RGDRRPELTDRP-WRSAHPGSLGKGSGGPGCPQEAHADGSW 397 Score = 20.8 bits (42), Expect(2) = 4.5 Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 7/23 (30%) Frame = -1 Query: 311 PPPPPLLNEA-------SRRQGP 264 PPPPPL +++ + QGP Sbjct: 316 PPPPPLRSDSFAATKSHEKAQGP 338
>WBP11_BRARE (Q6P0D5) WW domain-binding protein 11 (WBP-11)| Length = 640 Score = 29.3 bits (64), Expect = 4.9 Identities = 14/38 (36%), Positives = 15/38 (39%) Frame = +3 Query: 69 PSQKPHAPSSSPQPGPRACRPPLLVQPARAVASESRRP 182 P +P P S P PGP PP L P A P Sbjct: 384 PPMRPPGPPSGPPPGPPPGAPPFLRPPGLPSALRGPMP 421
>5E5_RAT (Q63003) 5E5 antigen| Length = 825 Score = 29.3 bits (64), Expect = 4.9 Identities = 28/87 (32%), Positives = 31/87 (35%), Gaps = 26/87 (29%) Frame = -2 Query: 277 GGRGRRLSWLGKRET---------EDGDTERRPR*RESGWRGRRDSEAT----------- 158 GGRGRR SW G R G R R SG G R+ + Sbjct: 563 GGRGRRGSWRGGRRGGGAGASGGGRGGRGRGRGGRRGSGLSGTREDAGSPSARRGEQRRR 622 Query: 157 ------ARAGWTSSGGRHARGPGCGEE 95 A A S+ GR ARG GEE Sbjct: 623 GHGPPAAGAAQVSTRGRRARGQRTGEE 649
>IF2_SYNEL (Q8DK04) Translation initiation factor IF-2| Length = 957 Score = 29.3 bits (64), Expect = 4.9 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = +3 Query: 63 KPPSQKPHAPSSSPQPGPRACRPPLLVQPARAVASESR 176 +P + KP AP + P+P P P L+ P R E + Sbjct: 131 EPVAAKPPAPPAKPEPTPPRPVPTLVPPPTRPTKKEEK 168
>VGLB_BHV1P (P17471) Glycoprotein I precursor (Glycoprotein GVP-6)| (Glycoprotein 11A) (Glycoprotein 16) (Glycoprotein G130) Length = 928 Score = 29.3 bits (64), Expect = 4.9 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +3 Query: 93 SSSPQPGPRACRPPLLVQPARAVASESRRPLH 188 +++P+PGPR R P ++PA +RR H Sbjct: 493 AAAPKPGPRRARRPRRLRPAPGRGQRARRRRH 524
>ARI1A_HUMAN (O14497) AT-rich interactive domain-containing protein 1A (ARID| domain-containing protein 1A) (SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin subfamily F member 1) (SWI-SNF complex protein p270) (B120) (SWI-like pr Length = 2285 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/45 (33%), Positives = 20/45 (44%) Frame = +3 Query: 63 KPPSQKPHAPSSSPQPGPRACRPPLLVQPARAVASESRRPLHPDS 197 +P SQ P SS P + +PP PA + +S HP S Sbjct: 503 QPQSQPPQLQSSQPPYSQQPSQPPHQQSPAPYPSQQSTTQQHPQS 547 Score = 28.5 bits (62), Expect = 8.4 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 7/47 (14%) Frame = +3 Query: 63 KPPSQKPHA-------PSSSPQPGPRACRPPLLVQPARAVASESRRP 182 +PPSQ PHA P S P P ++ +PP QP++ +S P Sbjct: 488 QPPSQTPHAQPSYQQQPQSQP-PQLQSSQPPYSQQPSQPPHQQSPAP 533
>ZBT10_RAT (Q9WTY8) Zinc finger and BTB domain-containing protein 10 (Zinc| finger protein RIN ZF) Length = 836 Score = 28.9 bits (63), Expect = 6.4 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 7/70 (10%) Frame = -2 Query: 277 GGRGRRLSWLGKRETEDG----DTERRPR*RESG---WRGRRDSEATARAGWTSSGGRHA 119 GGRG G + G + + R E G W GRR ++ R+G GG A Sbjct: 98 GGRGSGAGRAGGEGVDAGRGVPELQHRGGGGEPGRWQWGGRRQRSSSRRSG--GEGGEEA 155 Query: 118 RGPGCGEEDG 89 G G G +G Sbjct: 156 EGSGVGAGEG 165
>PATJ_DROME (Q9NB04) Patj homolog| Length = 871 Score = 28.9 bits (63), Expect = 6.4 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = +3 Query: 60 NKPPSQKPHAPSSSPQPGPRACRPPLLVQPARAVASE 170 +K PS P PS +P P P A P+R++ E Sbjct: 419 DKLPSSAPGTPSRAPMPTPVATTSSATTTPSRSITRE 455
>ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 protein)| (Trinucleotide repeat-containing gene 13 protein) Length = 1312 Score = 28.9 bits (63), Expect = 6.4 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = +3 Query: 60 NKPPSQKPHAPSSSPQPGPRACRPPLLVQPARAVASESRRPLHPDS 197 ++PPS+ P+S P PRA P P+R + SR P HP + Sbjct: 560 SRPPSRYQSGPNSLP---PRAATPTR--PPSRPPSRPSRPPSHPSA 600
>FBX42_PONPY (Q5RDA9) F-box only protein 42| Length = 717 Score = 28.9 bits (63), Expect = 6.4 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +3 Query: 66 PPSQKPHAPSSSPQPGPRACRPPLLVQPARAVASES 173 P + P +PS + +P P + PP LV R S+S Sbjct: 358 PSGRAPLSPSLNSRPSPISATPPALVPETREYRSQS 393
>FBX42_MOUSE (Q6PDJ6) F-box only protein 42| Length = 717 Score = 28.9 bits (63), Expect = 6.4 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +3 Query: 66 PPSQKPHAPSSSPQPGPRACRPPLLVQPARAVASES 173 P + P +PS + +P P + PP LV R S+S Sbjct: 358 PSGRAPLSPSLNSRPSPISATPPALVPETREYRSQS 393
>FBX42_HUMAN (Q6P3S6) F-box only protein 42| Length = 717 Score = 28.9 bits (63), Expect = 6.4 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +3 Query: 66 PPSQKPHAPSSSPQPGPRACRPPLLVQPARAVASES 173 P + P +PS + +P P + PP LV R S+S Sbjct: 358 PSGRAPLSPSLNSRPSPISATPPALVPETREYRSQS 393
>CT174_HUMAN (Q5JPB2) Protein C20orf174| Length = 1082 Score = 28.9 bits (63), Expect = 6.4 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +3 Query: 63 KPPSQKPHAPSSSPQPGPRACRPPLLVQPARAVASESR 176 +PP P PSS P GP C P +QP + + +R Sbjct: 510 EPPGNAPEDPSSGPLVGPDPCSP---LQPGSFLTALTR 544
>HCN2_RAT (Q9JKA9) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 Length = 863 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%) Frame = +3 Query: 87 APSSSPQPGPRACRPP---LLVQPARAVASESRRPLHPDS 197 +P ++P PGP PP L +QP A P HP+S Sbjct: 13 SPGTTPAPGPPPPPPPPAPLQLQPPPAPPPNPTTPSHPES 52
>RCOR2_RAT (Q5FWT8) REST corepressor 2| Length = 523 Score = 24.3 bits (51), Expect(2) = 8.1 Identities = 11/28 (39%), Positives = 13/28 (46%) Frame = +3 Query: 66 PPSQKPHAPSSSPQPGPRACRPPLLVQP 149 PP+ P P +S P RPPL P Sbjct: 434 PPAPPPPPPPTSLSQPPPLLRPPLPTAP 461 Score = 22.7 bits (47), Expect(2) = 8.1 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = +3 Query: 129 PPLLVQPARAVASESRRP 182 PP L++PA A + S RP Sbjct: 486 PPPLIRPALAASRHSARP 503
>RCOR2_MOUSE (Q8C796) REST corepressor 2 (M-CoREST)| Length = 523 Score = 24.3 bits (51), Expect(2) = 8.1 Identities = 11/28 (39%), Positives = 13/28 (46%) Frame = +3 Query: 66 PPSQKPHAPSSSPQPGPRACRPPLLVQP 149 PP+ P P +S P RPPL P Sbjct: 434 PPAPPPPPPPTSLSQPPPLLRPPLPTAP 461 Score = 22.7 bits (47), Expect(2) = 8.1 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = +3 Query: 129 PPLLVQPARAVASESRRP 182 PP L++PA A + S RP Sbjct: 486 PPPLIRPALAASRHSARP 503
>HCN4_HUMAN (Q9Y3Q4) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 Length = 1203 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/34 (41%), Positives = 16/34 (47%) Frame = +3 Query: 66 PPSQKPHAPSSSPQPGPRACRPPLLVQPARAVAS 167 P P PSSS P P AC P P+ VA+ Sbjct: 868 PAGLSPLLPSSSSSPPPGACGSPSAPTPSAGVAA 901
>ZFH1_DROME (P28166) Zinc finger protein 1 (Zinc finger homeodomain protein 1)| Length = 1054 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -3 Query: 240 GKQKTVTRNDDRDEENLDGEGGGIQRPPRGRVGRAAEDG 124 G +K R+DD + D G G+ PP+ R G+A G Sbjct: 920 GSEKRSWRDDDSRISHEDEFGAGVLMPPKPRRGKAETHG 958
>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1)| (Protein kinase with no lysine 2) (Protein kinase, lysine-deficient 2) Length = 2297 Score = 28.5 bits (62), Expect = 8.4 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%) Frame = +3 Query: 66 PPSQKPHAPSSSPQPGPRACRPPLLVQPA---RAVASESRRPLHPDSLHL 206 PP P P+ QP P +PP L QP + +A + PL P HL Sbjct: 711 PPPSTP-MPTGPGQPAPPGQQPPPLAQPTPLPQVLAPQPVVPLQPVPPHL 759
>CSKI1_MOUSE (Q6P9K8) Caskin-1 (CASK-interacting protein 1)| Length = 1431 Score = 28.5 bits (62), Expect = 8.4 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +3 Query: 99 SPQPGPRACRPPLLVQPARAVASESRRPLHPDS 197 SP P P P L++PA + S+S P+ P S Sbjct: 1300 SPVPSPARQPPAALIKPASSPPSQSASPVKPPS 1332
>SV2A_RAT (Q02563) Synaptic vesicle protein 2a (SV2)| Length = 742 Score = 28.5 bits (62), Expect = 8.4 Identities = 15/41 (36%), Positives = 17/41 (41%) Frame = -3 Query: 246 EKGKQKTVTRNDDRDEENLDGEGGGIQRPPRGRVGRAAEDG 124 E G T D D+E +GE GI R G G DG Sbjct: 76 EGGASSDATEGHDEDDEIYEGEYQGIPRAESGGKGERMADG 116
>INVS_CANFA (Q6JAN1) Inversin (Inversion of embryo turning protein)| (Nephrocystin-2) Length = 1081 Score = 28.5 bits (62), Expect = 8.4 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = +3 Query: 60 NKPPSQKPHAPSSSPQPGPRACR-PPLLVQPARAVASESRRPLHPD 194 ++ PS++P + ++ P RACR P V P+RA E L PD Sbjct: 637 SRAPSKQPPSSEAAQDPDKRACRGGPGRVSPSRAPQKEQH--LSPD 680
>TRPL_DROME (P48994) Transient-receptor-potential-like protein| Length = 1124 Score = 28.5 bits (62), Expect = 8.4 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = +3 Query: 93 SSSPQPGPRAC-RPPLLVQPARAVASESRRPLHPDSLHLGRR 215 S S +P R RPPL PARA+A+ + R L L + R+ Sbjct: 957 SDSEKPKIRPIWRPPLKTVPARAMAANNTRSLTAPELKISRK 998
>IF2_GLUOX (Q5FQM3) Translation initiation factor IF-2| Length = 917 Score = 28.5 bits (62), Expect = 8.4 Identities = 30/99 (30%), Positives = 37/99 (37%), Gaps = 2/99 (2%) Frame = +3 Query: 117 RACRPPLLVQPARAVASESRRPLHPDSLHLGRRXXXXXXXXXXXXQDNRRPLP--PGSFV 290 RA PP VQP+R A+ R + ++LHL D RRP P G Sbjct: 216 RAIMPPRPVQPSRPAAAAPAR--NNETLHL-------RSGAAAGGDDERRPAPRRSGPGA 266 Query: 291 QQGRRRRLSCMERKMGTLQLEDIGDYHLPVEVSHASDDD 407 RR S RK G D + V + DDD Sbjct: 267 PPAPPRRPSAPSRKGGG---SDRRSGRIDVRAAIEGDDD 302
>ADRB1_MACMU (P47899) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1| adrenoreceptor) Length = 480 Score = 28.5 bits (62), Expect = 8.4 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +3 Query: 78 KPHAPSSSPQPGPRACRPPLLVQPARAVAS 167 +P +PS SP P P PP +PA A A+ Sbjct: 271 RPPSPSPSPSPSPVPAPPPGPPRPAAAAAT 300
>ENAH_MOUSE (Q03173) Protein enabled homolog (NPC-derived proline-rich protein| 1) (NDPP-1) Length = 802 Score = 28.5 bits (62), Expect = 8.4 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 4/44 (9%) Frame = +3 Query: 66 PPSQKPHAPSSSPQPGPRACRPPLLVQPARAV----ASESRRPL 185 PP P P+ +P P P PPL PA + SE RPL Sbjct: 581 PPPPPPPLPNQAPPPPPPPPAPPL---PASGIFSGSTSEDNRPL 621
>BNR1_YEAST (P40450) BNI1-related protein 1| Length = 1375 Score = 25.0 bits (53), Expect(2) = 9.6 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = -1 Query: 311 PPPPPLLNEASRRQGPT 261 PPPPPL S +GP+ Sbjct: 822 PPPPPLPESLSMNKGPS 838 Score = 21.6 bits (44), Expect(2) = 9.6 Identities = 9/18 (50%), Positives = 10/18 (55%) Frame = -1 Query: 347 LKCPHLAFHAGEPPPPPL 294 +K P L PPPPPL Sbjct: 763 VKLPQLPPPPPPPPPPPL 780 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,349,615 Number of Sequences: 219361 Number of extensions: 1302492 Number of successful extensions: 7839 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 5961 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7650 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
