ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl54d07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_477026.1| Oryza sativa (japonica cultivar-group), mRNA 359 5e-96
2dbj|AK100095.1| Oryza sativa (japonica cultivar-group) cDNA clon... 359 5e-96
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
4dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
5gb|AC126333.7| Homo sapiens chromosome 8, clone RP11-666I19, com... 44 0.41
6gb|AF188030.5| Homo sapiens chromosome 8 clone RP4-593A12 map p2... 44 0.41
7gb|AF214636.4| Homo sapiens chromosome 8 clone RP4-605G11 map p2... 44 0.41
8gb|AC135112.5| Mus musculus BAC clone RP23-477F17 from chromosom... 44 0.41
9gb|AY123972.1| Arthrobacter sp. BP2 cyclohexanone oxidation gene... 44 0.41
10emb|BX294183.17| Mouse DNA sequence from clone RP24-388B10 on ch... 44 0.41
11gb|AC154247.2| Mus musculus BAC clone RP24-176G22 from chromosom... 44 0.41
12dbj|AB039951.1| Bacillus subtilis yuxH, yuzC, degQ, comQ, comX, ... 44 0.41
13dbj|AB010576.1| Bacillus subtilis ComX, ComQ and DegQ genes, com... 44 0.41
14ref|NM_187618.1| Oryza sativa (japonica cultivar-group), predic... 42 1.6
15ref|XM_472252.1| Oryza sativa (japonica cultivar-group), predic... 42 1.6
16gb|AE009089.1| Agrobacterium tumefaciens str. C58 circular chrom... 42 1.6
17gb|AY519500.1| Gallus gallus CNR/Pcdh-alpha gene cluster, comple... 42 1.6
18gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.6
19gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
20emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome 42 1.6
21emb|AL731619.3|OSJN00267 Oryza sativa genomic DNA, chromosome 4,... 42 1.6
22gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 42 1.6
23gb|AC090649.4| Genomic sequence for Mus musculus, clone RP23-361... 42 1.6
24ref|NG_004818.1| Gallus gallus cadherin-related neuronal recepto... 42 1.6
25dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
26dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
27emb|AL662977.3|OSJN00176 Oryza sativa genomic DNA, chromosome 4,... 42 1.6
28gb|AC008254.7|AC008254 Drosophila melanogaster, chromosome 3R, r... 42 1.6
29dbj|AK068454.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
30emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 42 1.6
31gb|AE003680.4| Drosophila melanogaster chromosome 3R, section 18... 42 1.6
32gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 6.4
33gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
34gb|AC133954.3| Mus musculus BAC clone RP23-154C17 from chromosom... 40 6.4
35gb|AC132100.3| Mus musculus BAC clone RP24-294D10 from chromosom... 40 6.4
36emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete ch... 40 6.4
37emb|CR848714.6| Wallaby DNA sequence from clone MEKBa-460J13, co... 40 6.4
38gb|AC156498.2| Mus musculus BAC clone RP24-300J13 from chromosom... 40 6.4
39gb|AC151605.2| Emiliania huxleyi clone JGIACCU-13A3, complete se... 40 6.4
40gb|U65510.1|RRU65510 Rhodospirillum rubrum alkyl hydroperoxide r... 40 6.4
41gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 6.4
42dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
43gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 40 6.4
44gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.4
45gb|AC104648.2| Homo sapiens BAC clone RP11-45D4 from 2, complete... 40 6.4
46dbj|AP005260.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
47ref|XM_316442.2| Anopheles gambiae str. PEST ENSANGP00000021115 ... 40 6.4
48ref|XM_313144.2| Anopheles gambiae str. PEST ENSANGP00000013219 ... 40 6.4
49gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
50emb|AL590430.8| Mouse DNA sequence from clone RP23-384K10 on chr... 40 6.4
51emb|AL732513.8| Mouse DNA sequence from clone RP23-344B24 on chr... 40 6.4
52dbj|AB046872.1| Physcomitrella patens Sig2 mRNA for PpSIG2, comp... 40 6.4
53dbj|AB059356.1| Physcomitrella patens Sig2 gene for PpSIG2, comp... 40 6.4 
>ref|XM_477026.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3193

 Score =  359 bits (181), Expect = 5e-96
 Identities = 247/269 (91%)
 Strand = Plus / Plus

                                                                       
Query: 207 gccatgtcgcagccgctcgtcgtgaagaaggacgacgacttagacgaggaagagtactac 266
           |||||| |||||||||||||||||||||||||||||||  | ||||||||||||||||||
Sbjct: 227 gccatggcgcagccgctcgtcgtgaagaaggacgacgatctcgacgaggaagagtactac 286

                                                                       
Query: 267 tcgccgttcctcggcatcgagaagggtgccgtcctgcaggaggcccgcgtcttccacgac 326
           |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 287 tcgccgttcctcgggatcgagaagggcgccgtcctgcaggaggcccgcgtcttccacgac 346

                                                                       
Query: 327 ccgcagcttgatgcgcggcgatgctgccaggtgatcaccaagcttctatatctgctcaac 386
           |||||||| || ||||| || ||||||||||| ||||||||||| ||||| |||||||||
Sbjct: 347 ccgcagctcgacgcgcgccgttgctgccaggtcatcaccaagctcctatacctgctcaac 406

                                                                       
Query: 387 cagggtgacacctttaccaaggtagaggccacagaggtattcttcgctacgaccaagttg 446
           |||||||||||||| |||||||| |||||||||||||| || || || ||||||||||||
Sbjct: 407 cagggtgacaccttcaccaaggtggaggccacagaggtcttttttgcgacgaccaagttg 466

                                        
Query: 447 tttcagtccaaggatgctggacttaggag 475
           ||||| ||||||||||| || ||||||||
Sbjct: 467 tttcaatccaaggatgcaggccttaggag 495
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>dbj|AK100095.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004B12, full
           insert sequence
          Length = 3193

 Score =  359 bits (181), Expect = 5e-96
 Identities = 247/269 (91%)
 Strand = Plus / Plus

                                                                       
Query: 207 gccatgtcgcagccgctcgtcgtgaagaaggacgacgacttagacgaggaagagtactac 266
           |||||| |||||||||||||||||||||||||||||||  | ||||||||||||||||||
Sbjct: 227 gccatggcgcagccgctcgtcgtgaagaaggacgacgatctcgacgaggaagagtactac 286

                                                                       
Query: 267 tcgccgttcctcggcatcgagaagggtgccgtcctgcaggaggcccgcgtcttccacgac 326
           |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 287 tcgccgttcctcgggatcgagaagggcgccgtcctgcaggaggcccgcgtcttccacgac 346

                                                                       
Query: 327 ccgcagcttgatgcgcggcgatgctgccaggtgatcaccaagcttctatatctgctcaac 386
           |||||||| || ||||| || ||||||||||| ||||||||||| ||||| |||||||||
Sbjct: 347 ccgcagctcgacgcgcgccgttgctgccaggtcatcaccaagctcctatacctgctcaac 406

                                                                       
Query: 387 cagggtgacacctttaccaaggtagaggccacagaggtattcttcgctacgaccaagttg 446
           |||||||||||||| |||||||| |||||||||||||| || || || ||||||||||||
Sbjct: 407 cagggtgacaccttcaccaaggtggaggccacagaggtcttttttgcgacgaccaagttg 466

                                        
Query: 447 tttcagtccaaggatgctggacttaggag 475
           ||||| ||||||||||| || ||||||||
Sbjct: 467 tttcaatccaaggatgcaggccttaggag 495
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  159 bits (80), Expect = 1e-35
 Identities = 98/104 (94%)
 Strand = Plus / Plus

                                                                           
Query: 257     agagtactactcgccgttcctcggcatcgagaagggtgccgtcctgcaggaggcccgcgt 316
               |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 5484834 agagtactactcgccgttcctcgggatcgagaagggcgccgtcctgcaggaggcccgcgt 5484893

                                                           
Query: 317     cttccacgacccgcagcttgatgcgcggcgatgctgccaggtga 360
               |||||||||||||||||| || ||||| || |||||||||||||
Sbjct: 5484894 cttccacgacccgcagctcgacgcgcgccgttgctgccaggtga 5484937



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                       
Query: 355     aggtgatcaccaagcttctatatctgctcaaccagggtgacacctttaccaaggta 410
               |||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct: 5485026 aggtcatcaccaagctcctatacctgctcaaccagggtgacaccttcaccaaggta 5485081



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 62/70 (88%)
 Strand = Plus / Plus

                                                                           
Query: 406     aggtagaggccacagaggtattcttcgctacgaccaagttgtttcagtccaaggatgctg 465
               |||| |||||||||||||| || || || ||||||||||||||||| ||||||||||| |
Sbjct: 5485742 aggtggaggccacagaggtcttttttgcgacgaccaagttgtttcaatccaaggatgcag 5485801

                         
Query: 466     gacttaggag 475
               | ||||||||
Sbjct: 5485802 gccttaggag 5485811



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                   
Query: 207     gccatgtcgcagccgctcgtcgtgaagaaggacgacgacttagacgaggaag 258
               |||||| |||||||||||||||||||||||||||||||  | ||||||||||
Sbjct: 5484550 gccatggcgcagccgctcgtcgtgaagaaggacgacgatctcgacgaggaag 5484601



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 54       cttcctcctctctcctgttc 73
                ||||||||||||||||||||
Sbjct: 10754361 cttcctcctctctcctgttc 10754380
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>dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0519E02
          Length = 139321

 Score =  159 bits (80), Expect = 1e-35
 Identities = 98/104 (94%)
 Strand = Plus / Plus

                                                                          
Query: 257    agagtactactcgccgttcctcggcatcgagaagggtgccgtcctgcaggaggcccgcgt 316
              |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 118815 agagtactactcgccgttcctcgggatcgagaagggcgccgtcctgcaggaggcccgcgt 118874

                                                          
Query: 317    cttccacgacccgcagcttgatgcgcggcgatgctgccaggtga 360
              |||||||||||||||||| || ||||| || |||||||||||||
Sbjct: 118875 cttccacgacccgcagctcgacgcgcgccgttgctgccaggtga 118918



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                      
Query: 355    aggtgatcaccaagcttctatatctgctcaaccagggtgacacctttaccaaggta 410
              |||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct: 119007 aggtcatcaccaagctcctatacctgctcaaccagggtgacaccttcaccaaggta 119062



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 62/70 (88%)
 Strand = Plus / Plus

                                                                          
Query: 406    aggtagaggccacagaggtattcttcgctacgaccaagttgtttcagtccaaggatgctg 465
              |||| |||||||||||||| || || || ||||||||||||||||| ||||||||||| |
Sbjct: 119723 aggtggaggccacagaggtcttttttgcgacgaccaagttgtttcaatccaaggatgcag 119782

                        
Query: 466    gacttaggag 475
              | ||||||||
Sbjct: 119783 gccttaggag 119792



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                  
Query: 207    gccatgtcgcagccgctcgtcgtgaagaaggacgacgacttagacgaggaag 258
              |||||| |||||||||||||||||||||||||||||||  | ||||||||||
Sbjct: 118531 gccatggcgcagccgctcgtcgtgaagaaggacgacgatctcgacgaggaag 118582
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>gb|AC126333.7| Homo sapiens chromosome 8, clone RP11-666I19, complete sequence
          Length = 127374

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 52    ctcttcctcctctctcctgttc 73
             ||||||||||||||||||||||
Sbjct: 22687 ctcttcctcctctctcctgttc 22708
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>gb|AF188030.5| Homo sapiens chromosome 8 clone RP4-593A12 map p23, complete sequence
          Length = 151329

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 52    ctcttcctcctctctcctgttc 73
             ||||||||||||||||||||||
Sbjct: 93539 ctcttcctcctctctcctgttc 93518
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>gb|AF214636.4| Homo sapiens chromosome 8 clone RP4-605G11 map p23, complete sequence
          Length = 95741

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 52    ctcttcctcctctctcctgttc 73
             ||||||||||||||||||||||
Sbjct: 11821 ctcttcctcctctctcctgttc 11800
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>gb|AC135112.5| Mus musculus BAC clone RP23-477F17 from chromosome unknown, complete
              sequence
          Length = 178498

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 51     cctcttcctcctctctcctgttcagtcctc 80
              ||||||||||||||||||| || |||||||
Sbjct: 119184 cctcttcctcctctctcctttttagtcctc 119155
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>gb|AY123972.1| Arthrobacter sp. BP2 cyclohexanone oxidation gene cluster, partial
            sequence
          Length = 8975

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 291  ggtgccgtcctgcaggaggccc 312
            ||||||||||||||||||||||
Sbjct: 2711 ggtgccgtcctgcaggaggccc 2690
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>emb|BX294183.17| Mouse DNA sequence from clone RP24-388B10 on chromosome X, complete
              sequence
          Length = 184943

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 51     cctcttcctcctctctcctgttcagtcctc 80
              ||||||||||||||||||| || |||||||
Sbjct: 162198 cctcttcctcctctctcctttttagtcctc 162227
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>gb|AC154247.2| Mus musculus BAC clone RP24-176G22 from chromosome 17, complete
             sequence
          Length = 162175

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 64    tctcctgttcagtcctccctcg 85
             ||||||||||||||||||||||
Sbjct: 60120 tctcctgttcagtcctccctcg 60141
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>dbj|AB039951.1| Bacillus subtilis yuxH, yuzC, degQ, comQ, comX, comP, comA, yuxO
           genes, partial and complete cds
          Length = 6114

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 105 ctcgcgggagctctcgcgccgc 126
           ||||||||||||||||||||||
Sbjct: 516 ctcgcgggagctctcgcgccgc 495
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>dbj|AB010576.1| Bacillus subtilis ComX, ComQ and DegQ genes, complete cds
          Length = 2517

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 105 ctcgcgggagctctcgcgccgc 126
           ||||||||||||||||||||||
Sbjct: 516 ctcgcgggagctctcgcgccgc 495
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>ref|NM_187618.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2481

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 147/189 (77%)
 Strand = Plus / Plus

                                                                       
Query: 285 gagaagggtgccgtcctgcaggaggcccgcgtcttccacgacccgcagcttgatgcgcgg 344
           |||||||| ||||| |||||||||||  | |  ||||| || ||||||||||||||  ||
Sbjct: 70  gagaagggagccgttctgcaggaggcaagggctttccatgatccgcagcttgatgccagg 129

                                                                       
Query: 345 cgatgctgccaggtgatcaccaagcttctatatctgctcaaccagggtgacacctttacc 404
              ||||  || || ||||| |||||  | ||| | |||||||| || || || || || 
Sbjct: 130 aagtgctcgcaagtcatcactaagctattgtatttactcaaccaaggggagacattcaca 189

                                                                       
Query: 405 aaggtagaggccacagaggtattcttcgctacgaccaagttgtttcagtccaaggatgct 464
           ||||| ||||||||||| || ||||| ||    || ||| |||| |||||||||||||||
Sbjct: 190 aaggttgaggccacagaagttttctttgcagtaacaaagctgttccagtccaaggatgct 249

                    
Query: 465 ggacttagg 473
           || ||||||
Sbjct: 250 ggtcttagg 258
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>ref|XM_472252.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1806

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 121 cgccgccccgctccgccgccg 141
           |||||||||||||||||||||
Sbjct: 180 cgccgccccgctccgccgccg 160
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>gb|AE009089.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 115
            of 256 of the complete sequence
          Length = 10144

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 314  cgtcttccacgacccgcagcttgatgcgc 342
            |||||||| ||||| ||||||||||||||
Sbjct: 1595 cgtcttccgcgacctgcagcttgatgcgc 1567
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>gb|AY519500.1| Gallus gallus CNR/Pcdh-alpha gene cluster, complete sequence
          Length = 187517

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 126    ccccgctccgccgccgttctc 146
              |||||||||||||||||||||
Sbjct: 105985 ccccgctccgccgccgttctc 105965
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 445     tgtttcagtccaaggatgctggacttagg 473
               |||| ||||||||||||||||| ||||||
Sbjct: 6646397 tgttccagtccaaggatgctggtcttagg 6646425



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                       
Query: 285     gagaagggtgccgtcctgcaggaggcccgcgtcttccacgacccgcagcttgatgc 340
               |||||||| ||||| |||||||||||  | |  ||||| || ||||||||||||||
Sbjct: 6646031 gagaagggagccgttctgcaggaggcaagggctttccatgatccgcagcttgatgc 6646086
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>gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1626B05,
             complete sequence
          Length = 127946

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 445   tgtttcagtccaaggatgctggacttagg 473
             |||| ||||||||||||||||| ||||||
Sbjct: 31945 tgttccagtccaaggatgctggtcttagg 31973



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                     
Query: 285   gagaagggtgccgtcctgcaggaggcccgcgtcttccacgacccgcagcttgatgc 340
             |||||||| ||||| |||||||||||  | |  ||||| || ||||||||||||||
Sbjct: 31579 gagaagggagccgttctgcaggaggcaagggctttccatgatccgcagcttgatgc 31634
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>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
          Length = 5205140

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 300     ctgcaggaggcccgcgtcttc 320
               |||||||||||||||||||||
Sbjct: 4382506 ctgcaggaggcccgcgtcttc 4382526
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>emb|AL731619.3|OSJN00267 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084N21,
            complete sequence
          Length = 143093

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 121  cgccgccccgctccgccgccg 141
            |||||||||||||||||||||
Sbjct: 6906 cgccgccccgctccgccgccg 6886
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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 314     cgtcttccacgacccgcagcttgatgcgc 342
               |||||||| ||||| ||||||||||||||
Sbjct: 1257267 cgtcttccgcgacctgcagcttgatgcgc 1257239
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>gb|AC090649.4| Genomic sequence for Mus musculus, clone RP23-361O12, complete sequence
          Length = 211611

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 51    cctcttcctcctctctcctgt 71
             |||||||||||||||||||||
Sbjct: 75898 cctcttcctcctctctcctgt 75878
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>ref|NG_004818.1| Gallus gallus cadherin-related neuronal receptor 10 pseudogene (CNRV10)
          Length = 98944

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 126   ccccgctccgccgccgttctc 146
             |||||||||||||||||||||
Sbjct: 27526 ccccgctccgccgccgttctc 27506
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 121      cgccgccccgctccgccgccg 141
                |||||||||||||||||||||
Sbjct: 18790996 cgccgccccgctccgccgccg 18790976
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 445     tgtttcagtccaaggatgctggacttagg 473
               |||| ||||||||||||||||| ||||||
Sbjct: 6645610 tgttccagtccaaggatgctggtcttagg 6645638



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                       
Query: 285     gagaagggtgccgtcctgcaggaggcccgcgtcttccacgacccgcagcttgatgc 340
               |||||||| ||||| |||||||||||  | |  ||||| || ||||||||||||||
Sbjct: 6645244 gagaagggagccgttctgcaggaggcaagggctttccatgatccgcagcttgatgc 6645299
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>emb|AL662977.3|OSJN00176 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D21,
              complete sequence
          Length = 160456

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 121    cgccgccccgctccgccgccg 141
              |||||||||||||||||||||
Sbjct: 140159 cgccgccccgctccgccgccg 140139
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>gb|AC008254.7|AC008254 Drosophila melanogaster, chromosome 3R, region 85C-85C, BAC clone
             BACR02G22, complete sequence
          Length = 164982

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 56    tcctcctctctcctgttcagtcctc 80
             |||||||||||||||||| ||||||
Sbjct: 69437 tcctcctctctcctgttctgtcctc 69413
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>dbj|AK068454.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155G01, full
           insert sequence
          Length = 3214

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 147/189 (77%)
 Strand = Plus / Plus

                                                                       
Query: 285 gagaagggtgccgtcctgcaggaggcccgcgtcttccacgacccgcagcttgatgcgcgg 344
           |||||||| ||||| |||||||||||  | |  ||||| || ||||||||||||||  ||
Sbjct: 250 gagaagggagccgttctgcaggaggcaagggctttccatgatccgcagcttgatgccagg 309

                                                                       
Query: 345 cgatgctgccaggtgatcaccaagcttctatatctgctcaaccagggtgacacctttacc 404
              ||||  || || ||||| |||||  | ||| | |||||||| || || || || || 
Sbjct: 310 aagtgctcgcaagtcatcactaagctattgtatttactcaaccaaggggagacattcaca 369

                                                                       
Query: 405 aaggtagaggccacagaggtattcttcgctacgaccaagttgtttcagtccaaggatgct 464
           ||||| ||||||||||| || ||||| ||    || ||| |||| |||||||||||||||
Sbjct: 370 aaggttgaggccacagaagttttctttgcagtaacaaagctgttccagtccaaggatgct 429

                    
Query: 465 ggacttagg 473
           || ||||||
Sbjct: 430 ggtcttagg 438
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 147    gcggcatagcggtcgacccgggcgc 171
              ||||||||||||||||| |||||||
Sbjct: 362798 gcggcatagcggtcgacgcgggcgc 362774
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>gb|AE003680.4| Drosophila melanogaster chromosome 3R, section 18 of 118 of the complete
              sequence
          Length = 270517

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 56     tcctcctctctcctgttcagtcctc 80
              |||||||||||||||||| ||||||
Sbjct: 267285 tcctcctctctcctgttctgtcctc 267261
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 296    cgtcctgcaggaggcccgcg 315
              ||||||||||||||||||||
Sbjct: 506652 cgtcctgcaggaggcccgcg 506671
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>gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0009F15,
              complete sequence
          Length = 142289

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 130    gctccgccgccgttctcgcggcat 153
              |||||||||||| |||||||||||
Sbjct: 112345 gctccgccgccgctctcgcggcat 112322
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>gb|AC133954.3| Mus musculus BAC clone RP23-154C17 from chromosome 5, complete sequence
          Length = 199991

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     ctcttcctcctctctcctgt 71
              ||||||||||||||||||||
Sbjct: 135518 ctcttcctcctctctcctgt 135537
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>gb|AC132100.3| Mus musculus BAC clone RP24-294D10 from chromosome 18, complete
             sequence
          Length = 173949

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    cctcctctctcctgttcagt 76
             ||||||||||||||||||||
Sbjct: 96813 cctcctctctcctgttcagt 96832
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>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12
          Length = 286550

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 282   atcgagaagggtgccgtcct 301
             ||||||||||||||||||||
Sbjct: 23174 atcgagaagggtgccgtcct 23155
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>emb|CR848714.6| Wallaby DNA sequence from clone MEKBa-460J13, complete sequence
          Length = 186287

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     ctcttcctcctctctcctgt 71
              ||||||||||||||||||||
Sbjct: 156270 ctcttcctcctctctcctgt 156251
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>gb|AC156498.2| Mus musculus BAC clone RP24-300J13 from chromosome 12, complete
             sequence
          Length = 175716

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 406   aggtagaggccacagaggtattct 429
             |||||||||||||||||| |||||
Sbjct: 98490 aggtagaggccacagaggaattct 98513
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>gb|AC151605.2| Emiliania huxleyi clone JGIACCU-13A3, complete sequence
          Length = 36153

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   tcgcgccgccccgctccgcc 137
             ||||||||||||||||||||
Sbjct: 31314 tcgcgccgccccgctccgcc 31295
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>gb|U65510.1|RRU65510 Rhodospirillum rubrum alkyl hydroperoxide reductase (ahpC) gene,
             partial cds; CooM (cooM), CooK (cooK), CooL (cooL), CooX
             (cooX), CooU (cooU), CooH (cooH), iron sulfur protein
             (cooF), carbon monoxide dehydrogenase (cooS), CooC (cooC),
             CooT (cooT), CooJ (cooJ), putative transcriptional
             activator; similar to cAMP-receptor (CAP, CRP) protein:
             PIR Accession Number A26049; similar to fnr (nirR) gene
             product encoded by GenBank Accession Number J01608;
             aspartic acid-rich C-terminus similar to acidic region of
             HMG (high mobility group) protei (cooA), and
             nicotinate-nucleotide pyrophosphorylase (nadC) genes,
             complete cds; L-aspartate oxidase (nadB) gene, partial
             cds; and unknown gene
          Length = 16259

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   gcgccgccccgctccgccgc 139
             ||||||||||||||||||||
Sbjct: 15846 gcgccgccccgctccgccgc 15827
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 120     gcgccgccccgctccgccgc 139
               ||||||||||||||||||||
Sbjct: 1691662 gcgccgccccgctccgccgc 1691643
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 130     gctccgccgccgttctcgcggcat 153
               |||||||||||| |||||||||||
Sbjct: 4460982 gctccgccgccgctctcgcggcat 4460959
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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 273     ttcctcggcatcgagaaggg 292
               ||||||||||||||||||||
Sbjct: 1659149 ttcctcggcatcgagaaggg 1659168
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 122     gccgccccgctccgccgccg 141
               ||||||||||||||||||||
Sbjct: 2744303 gccgccccgctccgccgccg 2744322
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>gb|AC104648.2| Homo sapiens BAC clone RP11-45D4 from 2, complete sequence
          Length = 112084

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    ttcctcctctctcctgttca 74
             ||||||||||||||||||||
Sbjct: 47456 ttcctcctctctcctgttca 47475
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>dbj|AP005260.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0557D09
          Length = 135315

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    cttcctcctctctcctgttc 73
             ||||||||||||||||||||
Sbjct: 83807 cttcctcctctctcctgttc 83826
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>ref|XM_316442.2| Anopheles gambiae str. PEST ENSANGP00000021115
           (ENSANGG00000018626), partial mRNA
          Length = 1731

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 323 cgacccgcagcttgatgcgc 342
           ||||||||||||||||||||
Sbjct: 931 cgacccgcagcttgatgcgc 912
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>ref|XM_313144.2| Anopheles gambiae str. PEST ENSANGP00000013219
           (ENSANGG00000010730), partial mRNA
          Length = 1333

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 282 atcgagaagggtgccgtcctgcag 305
           ||||| ||||||||||||||||||
Sbjct: 657 atcgataagggtgccgtcctgcag 634
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 130     gctccgccgccgttctcgcggcat 153
               |||||||||||| |||||||||||
Sbjct: 4469676 gctccgccgccgctctcgcggcat 4469653
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>emb|AL590430.8| Mouse DNA sequence from clone RP23-384K10 on chromosome 2, complete
             sequence
          Length = 144909

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    tcttcctcctctctcctgtt 72
             ||||||||||||||||||||
Sbjct: 38565 tcttcctcctctctcctgtt 38546
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>emb|AL732513.8| Mouse DNA sequence from clone RP23-344B24 on chromosome 2, complete
             sequence
          Length = 209452

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    gcctcttcctcctctctcct 69
             ||||||||||||||||||||
Sbjct: 54386 gcctcttcctcctctctcct 54405
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>dbj|AB046872.1| Physcomitrella patens Sig2 mRNA for PpSIG2, complete cds
          Length = 2207

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  cgcctcttcctcctctctcc 68
           ||||||||||||||||||||
Sbjct: 918 cgcctcttcctcctctctcc 899
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>dbj|AB059356.1| Physcomitrella patens Sig2 gene for PpSIG2, complete cds
          Length = 3439

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 49   cgcctcttcctcctctctcc 68
            ||||||||||||||||||||
Sbjct: 1427 cgcctcttcctcctctctcc 1408


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,303,495
Number of Sequences: 3902068
Number of extensions: 3303495
Number of successful extensions: 83130
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82300
Number of HSP's gapped (non-prelim): 825
length of query: 477
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 455
effective length of database: 17,147,199,772
effective search space: 7801975896260
effective search space used: 7801975896260
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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