ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl54d06 |
|---|---|
| Clone Library Name | barley_pub |
>AROB_BACC1 (Q73AX8) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 361 Score = 31.2 bits (69), Expect = 1.4 Identities = 20/67 (29%), Positives = 29/67 (43%) Frame = +3 Query: 243 VVVNGRKEKIASGLLNPFVAHLKAAQDQIAKGGYTILLQPDPGADAPWFTRGTIQRFVRF 422 VV +G KEK N + AH A ++++ + I L D F + R +RF Sbjct: 69 VVPSGEKEK---SFENFYAAHTSALENKLDRNSLIIALGGGMIGDLAGFVAASFMRGIRF 125 Query: 423 VSTPXVL 443 V P L Sbjct: 126 VQVPTTL 132
>AROB_BACAN (Q81SV6) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 363 Score = 31.2 bits (69), Expect = 1.4 Identities = 20/67 (29%), Positives = 29/67 (43%) Frame = +3 Query: 243 VVVNGRKEKIASGLLNPFVAHLKAAQDQIAKGGYTILLQPDPGADAPWFTRGTIQRFVRF 422 VV +G KEK N + AH A ++++ + I L D F + R +RF Sbjct: 69 VVPSGEKEK---SFENFYAAHTSALENKLDRNSLIIALGGGMIGDLAGFVAASFMRGIRF 125 Query: 423 VSTPXVL 443 V P L Sbjct: 126 VQVPTTL 132
>AROB_BACHK (Q6HL38) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 363 Score = 30.8 bits (68), Expect = 1.8 Identities = 19/67 (28%), Positives = 29/67 (43%) Frame = +3 Query: 243 VVVNGRKEKIASGLLNPFVAHLKAAQDQIAKGGYTILLQPDPGADAPWFTRGTIQRFVRF 422 VV +G KEK N + AH A ++++ + + L D F + R +RF Sbjct: 69 VVPSGEKEK---SFENFYAAHTSALENKLDRNSLIVALGGGMIGDLAGFVAASFMRGIRF 125 Query: 423 VSTPXVL 443 V P L Sbjct: 126 VQVPTTL 132
>AROB_BACCZ (Q63DL5) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 361 Score = 30.8 bits (68), Expect = 1.8 Identities = 19/67 (28%), Positives = 29/67 (43%) Frame = +3 Query: 243 VVVNGRKEKIASGLLNPFVAHLKAAQDQIAKGGYTILLQPDPGADAPWFTRGTIQRFVRF 422 VV +G KEK N + AH A ++++ + + L D F + R +RF Sbjct: 69 VVPSGEKEK---SFENFYAAHTSALENKLDRNSLIVALGGGMIGDLAGFVAASFMRGIRF 125 Query: 423 VSTPXVL 443 V P L Sbjct: 126 VQVPTTL 132
>AROB_BACCR (Q81FQ2) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 361 Score = 30.4 bits (67), Expect = 2.4 Identities = 19/67 (28%), Positives = 29/67 (43%) Frame = +3 Query: 243 VVVNGRKEKIASGLLNPFVAHLKAAQDQIAKGGYTILLQPDPGADAPWFTRGTIQRFVRF 422 VV +G KEK N + AH A ++++ + + L D F + R +RF Sbjct: 69 VVPSGEKEK---SFENFYAAHTSALENKLDRNSLILALGGGMIGDLAGFVAASFMRGIRF 125 Query: 423 VSTPXVL 443 V P L Sbjct: 126 VQVPTTL 132
>YSC2_THETH (P25125) Hypothetical 38.4 kDa protein in scsB 5'region (ORFB)| Length = 343 Score = 28.5 bits (62), Expect = 9.1 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = -3 Query: 316 AALRWATKGLSRPEAIFSFLPFTTTTKSHLVRVGVSWN 203 AA R+ RPEAI F T +S L RV ++WN Sbjct: 105 AAERFLAWAKERPEAIQDFDQGYVTPESTLARVALAWN 142
>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing| factor SRP75) (SRP001LB) Length = 494 Score = 28.5 bits (62), Expect = 9.1 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = -1 Query: 123 RSRPKNAQSTWMGREQEQVRGFGRSKKKENSTSLRKRNP 7 RSR K+ +S G +++ G + KKKE++ + R+P Sbjct: 369 RSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSP 407
>IF2_SHEON (Q8EHL5) Translation initiation factor IF-2| Length = 885 Score = 28.5 bits (62), Expect = 9.1 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -2 Query: 359 LEQDGVATLGDLVLCGLEVG 300 L Q+G GD+VLCGLE G Sbjct: 581 LVQEGTLRQGDIVLCGLEYG 600
>IF2_COLP3 (Q482T9) Translation initiation factor IF-2| Length = 889 Score = 28.5 bits (62), Expect = 9.1 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -2 Query: 359 LEQDGVATLGDLVLCGLEVG 300 L Q+G GD+VLCGLE G Sbjct: 585 LVQEGTLKQGDIVLCGLEYG 604 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,810,147 Number of Sequences: 219361 Number of extensions: 1136496 Number of successful extensions: 3848 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 3710 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3847 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
