ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl54d04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CH10_PARDE (Q9Z463) 10 kDa chaperonin (Protein Cpn10) (groES pro... 33 0.45
2CH10_RHOCA (P95677) 10 kDa chaperonin (Protein Cpn10) (groES pro... 31 1.7
3CH101_RHOSH (P25969) 10 kDa chaperonin 1 (Protein Cpn10 1) (groE... 30 2.2
4CH10_RHOPA (Q93MH2) 10 kDa chaperonin (Protein Cpn10) (groES pro... 29 4.9
5PGK_HELPY (P56154) Phosphoglycerate kinase (EC 2.7.2.3) 29 6.4
6LEU1_RHIME (Q9X7L2) 2-isopropylmalate synthase (EC 2.3.3.13) (Al... 28 8.4
7ACDB_ARCFU (O29868) Acetyl-CoA decarbonylase/synthase complex be... 28 8.4

>CH10_PARDE (Q9Z463) 10 kDa chaperonin (Protein Cpn10) (groES protein)|
          Length = 95

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 20/49 (40%), Positives = 25/49 (51%)
 Frame = -2

Query: 160 VPDSWP*PQPAQGQ*DSFGAGATPPCGERSAAREVAGDRDEAGEWRDAE 14
           +PDS    +PA+G+  S G GA    GE  A    AGDR   G+W   E
Sbjct: 27  IPDSAK-EKPAEGEITSVGEGARKDSGELIAPAVKAGDRVLFGKWSGTE 74



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>CH10_RHOCA (P95677) 10 kDa chaperonin (Protein Cpn10) (groES protein)|
          Length = 95

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -2

Query: 136 QPAQGQ*DSFGAGATPPCGERSAAREVAGDRDEAGEWRDAE 14
           +PA+G+  + GAGA    GE  A     GDR   G+W   E
Sbjct: 34  KPAEGEVVAVGAGARKDSGELIAPAVAVGDRILFGKWSGTE 74



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>CH101_RHOSH (P25969) 10 kDa chaperonin 1 (Protein Cpn10 1) (groES protein 1)|
          Length = 94

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -2

Query: 136 QPAQGQ*DSFGAGATPPCGERSAAREVAGDRDEAGEWRDAE 14
           +PA+G+  S G GA    GE  A    AGDR   G+W   E
Sbjct: 33  KPAEGEVVSCGEGARKDSGELIAMSVKAGDRVLFGKWSGTE 73



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>CH10_RHOPA (Q93MH2) 10 kDa chaperonin (Protein Cpn10) (groES protein)|
          Length = 95

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -2

Query: 136 QPAQGQ*DSFGAGATPPCGERSAAREVAGDRDEAGEWRDAE 14
           +PA+G+  + G GA    GE  A    AGDR   G+W   E
Sbjct: 34  KPAEGEVVACGEGARKDSGELIAMSVKAGDRVLFGKWSGTE 74



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>PGK_HELPY (P56154) Phosphoglycerate kinase (EC 2.7.2.3)|
          Length = 402

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
 Frame = +1

Query: 166 QTIKSSSDRIVIAVED--VSDLWLNVKDS--FKQRLPVKKACLNNKARNPVLVENL 321
           Q ++ S  R++I V+     D  LN+ D    ++ LP  + C++NKA++ +LV +L
Sbjct: 15  QEVEVSHKRVLIRVDFNVPLDENLNITDDTRIRESLPTIQYCIDNKAKDIILVSHL 70



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>LEU1_RHIME (Q9X7L2) 2-isopropylmalate synthase (EC 2.3.3.13)|
           (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase)
          Length = 558

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 94  TPPCGERSAAREVAGDRDEAGEWRDAEGRG 5
           T P GE    R VA +  + GE R  EG+G
Sbjct: 449 TYPAGEHKGLRVVAAEITDGGETRQIEGKG 478



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>ACDB_ARCFU (O29868) Acetyl-CoA decarbonylase/synthase complex beta subunit (EC|
           2.3.1.-) (ACDS complex beta subunit) (ACDS complex
           acyltransferase)
          Length = 523

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
 Frame = +1

Query: 220 DLWLNV-----KDSFKQRLPVKKACLNNKARNPVLVENLPAEFIQTTDSRLRSRFPQEQY 384
           D+W+ +     K   K  + + KA +         +E + A +I  TD  L  +   E  
Sbjct: 129 DIWIRIGKNAIKKGLKSLIQIAKATMMLYKNELPFIEKIEAVYI--TDKDLVEKLLNELA 186

Query: 385 LF*FREPYATVVLVTCEDLDEF 450
           +  F E  A V  ++ ED+DEF
Sbjct: 187 MPIFEERDARVEALSDEDVDEF 208


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,531,570
Number of Sequences: 219361
Number of extensions: 858776
Number of successful extensions: 2647
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2647
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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