Clone Name | bastl54d04 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK072345.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049N15, full insert sequence Length = 4187 Score = 361 bits (182), Expect = 1e-96 Identities = 278/310 (89%) Strand = Plus / Plus Query: 142 atggccaactatctggcacagttccagaccatcaagtcctcctccgaccgcatcgtcatc 201 ||||| ||||| || || ||||||||||||||||||||||||| ||||||||||||| || Sbjct: 188 atggcgaactacctcgcgcagttccagaccatcaagtcctcctgcgaccgcatcgtcgtc 247 Query: 202 gccgttgaggatgtcagtgacttgtggctcaacgtcaaagatagtttcaagcagcgcttg 261 |||||||| ||||| ||||||||||||||||| || ||||| |||||| |||| ||||| Sbjct: 248 gccgttgaagatgtgagtgacttgtggctcaatgtgaaagaaagtttcgagcaacgctta 307 Query: 262 ccagtcaagaaagcctgtctcaataacaaggcgaggaaccctgttcttgtggaaaaccta 321 ||||| ||||| ||||| |||||||||||||||||||| |||||| |||||||||||||| Sbjct: 308 ccagtgaagaaggcctgcctcaataacaaggcgaggaatcctgtttttgtggaaaaccta 367 Query: 322 ccagccgagtttatacagacaactgattcaaggctgcgtagtcggtttccacaagaacaa 381 ||||| |||||||||||||| |||||||| ||||| |||||||| ||||||||||| ||| Sbjct: 368 ccagctgagtttatacagaccactgattcgaggctacgtagtcgatttccacaagatcaa 427 Query: 382 tacttgttttgatttcgcgaaccgtatgctactgttgttcttgttacttgcgaggatctt 441 ||||||||||| || || ||||| ||||| |||||||||||||| | ||||||||||||| Sbjct: 428 tacttgttttggttccgggaaccatatgcaactgttgttcttgtcagttgcgaggatctt 487 Query: 442 gatgagttca 451 |||||||||| Sbjct: 488 gatgagttca 497
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 254 bits (128), Expect = 2e-64 Identities = 206/232 (88%) Strand = Plus / Minus Query: 205 gttgaggatgtcagtgacttgtggctcaacgtcaaagatagtttcaagcagcgcttgcca 264 ||||| ||||| ||||||||||||||||| || ||||| |||||| |||| ||||| ||| Sbjct: 22562087 gttgaagatgtgagtgacttgtggctcaatgtgaaagaaagtttcgagcaacgcttacca 22562028 Query: 265 gtcaagaaagcctgtctcaataacaaggcgaggaaccctgttcttgtggaaaacctacca 324 || ||||| ||||| |||||||||||||||||||| |||||| ||||||||||||||||| Sbjct: 22562027 gtgaagaaggcctgcctcaataacaaggcgaggaatcctgtttttgtggaaaacctacca 22561968 Query: 325 gccgagtttatacagacaactgattcaaggctgcgtagtcggtttccacaagaacaatac 384 || |||||||||||||| |||||||| ||||| |||||||| ||||||||||| |||||| Sbjct: 22561967 gctgagtttatacagaccactgattcgaggctacgtagtcgatttccacaagatcaatac 22561908 Query: 385 ttgttttgatttcgcgaaccgtatgctactgttgttcttgttacttgcgagg 436 |||||||| || || ||||| ||||| |||||||||||||| | |||||||| Sbjct: 22561907 ttgttttggttccgggaaccatatgcaactgttgttcttgtcagttgcgagg 22561856 Score = 79.8 bits (40), Expect = 7e-12 Identities = 58/64 (90%) Strand = Plus / Minus Query: 142 atggccaactatctggcacagttccagaccatcaagtcctcctccgaccgcatcgtcatc 201 ||||| ||||| || || ||||||||||||||||||||||||| ||||||||||||| || Sbjct: 22562685 atggcgaactacctcgcgcagttccagaccatcaagtcctcctgcgaccgcatcgtcgtc 22562626 Query: 202 gccg 205 |||| Sbjct: 22562625 gccg 22562622
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 254 bits (128), Expect = 2e-64 Identities = 206/232 (88%) Strand = Plus / Minus Query: 205 gttgaggatgtcagtgacttgtggctcaacgtcaaagatagtttcaagcagcgcttgcca 264 ||||| ||||| ||||||||||||||||| || ||||| |||||| |||| ||||| ||| Sbjct: 22490432 gttgaagatgtgagtgacttgtggctcaatgtgaaagaaagtttcgagcaacgcttacca 22490373 Query: 265 gtcaagaaagcctgtctcaataacaaggcgaggaaccctgttcttgtggaaaacctacca 324 || ||||| ||||| |||||||||||||||||||| |||||| ||||||||||||||||| Sbjct: 22490372 gtgaagaaggcctgcctcaataacaaggcgaggaatcctgtttttgtggaaaacctacca 22490313 Query: 325 gccgagtttatacagacaactgattcaaggctgcgtagtcggtttccacaagaacaatac 384 || |||||||||||||| |||||||| ||||| |||||||| ||||||||||| |||||| Sbjct: 22490312 gctgagtttatacagaccactgattcgaggctacgtagtcgatttccacaagatcaatac 22490253 Query: 385 ttgttttgatttcgcgaaccgtatgctactgttgttcttgttacttgcgagg 436 |||||||| || || ||||| ||||| |||||||||||||| | |||||||| Sbjct: 22490252 ttgttttggttccgggaaccatatgcaactgttgttcttgtcagttgcgagg 22490201 Score = 79.8 bits (40), Expect = 7e-12 Identities = 58/64 (90%) Strand = Plus / Minus Query: 142 atggccaactatctggcacagttccagaccatcaagtcctcctccgaccgcatcgtcatc 201 ||||| ||||| || || ||||||||||||||||||||||||| ||||||||||||| || Sbjct: 22491030 atggcgaactacctcgcgcagttccagaccatcaagtcctcctgcgaccgcatcgtcgtc 22490971 Query: 202 gccg 205 |||| Sbjct: 22490970 gccg 22490967
>emb|AL954871.5|CNS08CDA Oryza sativa chromosome 12, . BAC OSJNBb0085B24 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131441 Score = 254 bits (128), Expect = 2e-64 Identities = 206/232 (88%) Strand = Plus / Minus Query: 205 gttgaggatgtcagtgacttgtggctcaacgtcaaagatagtttcaagcagcgcttgcca 264 ||||| ||||| ||||||||||||||||| || ||||| |||||| |||| ||||| ||| Sbjct: 64666 gttgaagatgtgagtgacttgtggctcaatgtgaaagaaagtttcgagcaacgcttacca 64607 Query: 265 gtcaagaaagcctgtctcaataacaaggcgaggaaccctgttcttgtggaaaacctacca 324 || ||||| ||||| |||||||||||||||||||| |||||| ||||||||||||||||| Sbjct: 64606 gtgaagaaggcctgcctcaataacaaggcgaggaatcctgtttttgtggaaaacctacca 64547 Query: 325 gccgagtttatacagacaactgattcaaggctgcgtagtcggtttccacaagaacaatac 384 || |||||||||||||| |||||||| ||||| |||||||| ||||||||||| |||||| Sbjct: 64546 gctgagtttatacagaccactgattcgaggctacgtagtcgatttccacaagatcaatac 64487 Query: 385 ttgttttgatttcgcgaaccgtatgctactgttgttcttgttacttgcgagg 436 |||||||| || || ||||| ||||| |||||||||||||| | |||||||| Sbjct: 64486 ttgttttggttccgggaaccatatgcaactgttgttcttgtcagttgcgagg 64435 Score = 79.8 bits (40), Expect = 7e-12 Identities = 58/64 (90%) Strand = Plus / Minus Query: 142 atggccaactatctggcacagttccagaccatcaagtcctcctccgaccgcatcgtcatc 201 ||||| ||||| || || ||||||||||||||||||||||||| ||||||||||||| || Sbjct: 65264 atggcgaactacctcgcgcagttccagaccatcaagtcctcctgcgaccgcatcgtcgtc 65205 Query: 202 gccg 205 |||| Sbjct: 65204 gccg 65201
>emb|AL845342.2|CNS08CB4 Oryza sativa chromosome 12, . BAC OSJNBa0027H05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 138368 Score = 254 bits (128), Expect = 2e-64 Identities = 206/232 (88%) Strand = Plus / Minus Query: 205 gttgaggatgtcagtgacttgtggctcaacgtcaaagatagtttcaagcagcgcttgcca 264 ||||| ||||| ||||||||||||||||| || ||||| |||||| |||| ||||| ||| Sbjct: 7361 gttgaagatgtgagtgacttgtggctcaatgtgaaagaaagtttcgagcaacgcttacca 7302 Query: 265 gtcaagaaagcctgtctcaataacaaggcgaggaaccctgttcttgtggaaaacctacca 324 || ||||| ||||| |||||||||||||||||||| |||||| ||||||||||||||||| Sbjct: 7301 gtgaagaaggcctgcctcaataacaaggcgaggaatcctgtttttgtggaaaacctacca 7242 Query: 325 gccgagtttatacagacaactgattcaaggctgcgtagtcggtttccacaagaacaatac 384 || |||||||||||||| |||||||| ||||| |||||||| ||||||||||| |||||| Sbjct: 7241 gctgagtttatacagaccactgattcgaggctacgtagtcgatttccacaagatcaatac 7182 Query: 385 ttgttttgatttcgcgaaccgtatgctactgttgttcttgttacttgcgagg 436 |||||||| || || ||||| ||||| |||||||||||||| | |||||||| Sbjct: 7181 ttgttttggttccgggaaccatatgcaactgttgttcttgtcagttgcgagg 7130 Score = 79.8 bits (40), Expect = 7e-12 Identities = 58/64 (90%) Strand = Plus / Minus Query: 142 atggccaactatctggcacagttccagaccatcaagtcctcctccgaccgcatcgtcatc 201 ||||| ||||| || || ||||||||||||||||||||||||| ||||||||||||| || Sbjct: 7959 atggcgaactacctcgcgcagttccagaccatcaagtcctcctgcgaccgcatcgtcgtc 7900 Query: 202 gccg 205 |||| Sbjct: 7899 gccg 7896
>ref|NM_124824.3| Arabidopsis thaliana unknown protein AT5G54440 mRNA, complete cds Length = 4033 Score = 44.1 bits (22), Expect = 0.39 Identities = 79/98 (80%) Strand = Plus / Plus Query: 352 aggctgcgtagtcggtttccacaagaacaatacttgttttgatttcgcgaaccgtatgct 411 ||||| |||||||| || || || || || || ||||| || ||||| ||||| || || Sbjct: 331 aggcttcgtagtcgattcccgcaggagcagtatttgttctggtttcgagaaccatacgca 390 Query: 412 actgttgttcttgttacttgcgaggatcttgatgagtt 449 ||| | |||||||| || || ||||||||||||||||| Sbjct: 391 actatagttcttgtcacatgtgaggatcttgatgagtt 428
>emb|AL451185.14| Human DNA sequence from clone RP11-136C6 on chromosome 6 Contains the KCNK5 gene for potassium channel subfamily K member 5 (TASK-2) and a CpG island, complete sequence Length = 101841 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Plus Query: 5 tcccctcccctccgcatctcgccactcccc 34 ||||||||||||| |||||| ||||||||| Sbjct: 86719 tcccctcccctccccatctccccactcccc 86748
>gb|AY090975.1| Arabidopsis thaliana At5g54440 mRNA sequence Length = 4025 Score = 44.1 bits (22), Expect = 0.39 Identities = 79/98 (80%) Strand = Plus / Plus Query: 352 aggctgcgtagtcggtttccacaagaacaatacttgttttgatttcgcgaaccgtatgct 411 ||||| |||||||| || || || || || || ||||| || ||||| ||||| || || Sbjct: 331 aggcttcgtagtcgattcccgcaggagcagtatttgttctggtttcgagaaccatacgca 390 Query: 412 actgttgttcttgttacttgcgaggatcttgatgagtt 449 ||| | |||||||| || || ||||||||||||||||| Sbjct: 391 actatagttcttgtcacatgtgaggatcttgatgagtt 428
>gb|AC010388.6| Homo sapiens chromosome 5 clone CTD-2075D11, complete sequence Length = 159766 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Plus Query: 5 tcccctcccctccgcatctcgccactcccc 34 ||||||||||||| |||||| ||||||||| Sbjct: 129229 tcccctcccctccccatctccccactcccc 129258
>gb|AC121495.11| Mus musculus chromosome 18, clone RP24-181M14, complete sequence Length = 195507 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 aggaaccctgttcttgtggaa 315 ||||||||||||||||||||| Sbjct: 20832 aggaaccctgttcttgtggaa 20852
>gb|AC135291.4| Mus musculus BAC clone RP23-69G18 from chromosome 18, complete sequence Length = 180673 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 295 aggaaccctgttcttgtggaa 315 ||||||||||||||||||||| Sbjct: 19176 aggaaccctgttcttgtggaa 19156
>gb|AC122745.10| Mus musculus chromosome 18, clone RP23-133M21, complete sequence Length = 200776 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 295 aggaaccctgttcttgtggaa 315 ||||||||||||||||||||| Sbjct: 26899 aggaaccctgttcttgtggaa 26879
>emb|AL022313.1|HS1119A7 Human DNA sequence from clone RP5-1119A7 on chromosome 22q12.2-12.3, complete sequence Length = 127145 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 257 gcttgccagtcaagaaagcct 277 ||||||||||||||||||||| Sbjct: 18854 gcttgccagtcaagaaagcct 18834
>gb|AC091967.3| Homo sapiens chromosome 5 clone RP11-489I4, complete sequence Length = 187245 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 301 cctgttcttgtggaaaaccta 321 ||||||||||||||||||||| Sbjct: 134552 cctgttcttgtggaaaaccta 134572
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 2 ctctcccctcccctccgcatctcgccactcccc 34 |||||||||||||||| |||||| || |||||| Sbjct: 17333295 ctctcccctcccctccacatctctcctctcccc 17333263
>gb|AC091978.3| Homo sapiens chromosome 5 clone RP11-531A21, complete sequence Length = 192708 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 301 cctgttcttgtggaaaaccta 321 ||||||||||||||||||||| Sbjct: 143690 cctgttcttgtggaaaaccta 143670
>dbj|AP005261.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0640E12 Length = 167353 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 2 ctctcccctcccctccgcatctcgccactcccc 34 |||||||||||||||| |||||| || |||||| Sbjct: 138420 ctctcccctcccctccacatctctcctctcccc 138388
>dbj|AP004299.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0434A03 Length = 146505 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 2 ctctcccctcccctccgcatctcgccactcccc 34 |||||||||||||||| |||||| || |||||| Sbjct: 1519 ctctcccctcccctccacatctctcctctcccc 1487
>ref|XM_480502.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2931 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 tgtctccggcgacctccctg 65 |||||||||||||||||||| Sbjct: 1195 tgtctccggcgacctccctg 1176
>gb|AC120237.5| Rattus norvegicus 1 BAC CH230-453N3 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 150760 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 aagaaagcctgtctcaataa 287 |||||||||||||||||||| Sbjct: 61016 aagaaagcctgtctcaataa 60997
>gb|AC121785.3| Mus musculus BAC clone RP23-382K4 from chromosome 3, complete sequence Length = 197272 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 gatgtcagtgacttgtggct 230 |||||||||||||||||||| Sbjct: 71166 gatgtcagtgacttgtggct 71185
>gb|AC133171.5| Mus musculus BAC clone RP24-271D14 from chromosome 18, complete sequence Length = 126873 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 acaagaacaatacttgtttt 391 |||||||||||||||||||| Sbjct: 124284 acaagaacaatacttgtttt 124303
>emb|CR855267.20| Zebrafish DNA sequence from clone DKEY-220L13, complete sequence Length = 142801 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 374 aagaacaatacttgttttgatttc 397 ||||||||||||| |||||||||| Sbjct: 5247 aagaacaatacttcttttgatttc 5224
>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29 Length = 308050 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 cgaccgcatcgtcatcgccg 205 |||||||||||||||||||| Sbjct: 288061 cgaccgcatcgtcatcgccg 288080
>dbj|AP007152.1| Aspergillus oryzae RIB40 genomic DNA, SC308 Length = 51359 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 gctactgttgttcttgttac 428 |||||||||||||||||||| Sbjct: 15686 gctactgttgttcttgttac 15705
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 tgtctccggcgacctccctg 65 |||||||||||||||||||| Sbjct: 5461766 tgtctccggcgacctccctg 5461785
>gb|AC158660.4| Mus musculus 6 BAC RP23-387H1 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 199439 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 tttccacaagaacaatactt 386 |||||||||||||||||||| Sbjct: 51200 tttccacaagaacaatactt 51181
>gb|AF521923.1| Phytophthora infestans clone 6-17 mRNA sequence Length = 289 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 254 agcgcttgccagtcaagaaagcct 277 ||||||||||| |||||||||||| Sbjct: 73 agcgcttgccattcaagaaagcct 50
>dbj|AP005441.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0056O06 Length = 151038 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 tgtctccggcgacctccctg 65 |||||||||||||||||||| Sbjct: 131577 tgtctccggcgacctccctg 131596
>gb|AC150274.2| Mus musculus BAC clone RP23-348G11 from 18, complete sequence Length = 194318 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 acaagaacaatacttgtttt 391 |||||||||||||||||||| Sbjct: 54158 acaagaacaatacttgtttt 54177 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,556,860 Number of Sequences: 3902068 Number of extensions: 3556860 Number of successful extensions: 124948 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 124667 Number of HSP's gapped (non-prelim): 281 length of query: 455 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 433 effective length of database: 17,147,199,772 effective search space: 7424737501276 effective search space used: 7424737501276 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)