ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl54c10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK067479.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107M10, full insert sequence Length = 3250 Score = 172 bits (87), Expect = 6e-40 Identities = 99/103 (96%) Strand = Plus / Plus Query: 316 aacgtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctcc 375 |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct: 396 aacgtgacgtacgaccaccgcgcggtggtcatcgacggcgtgcgacgcgtgctcgtctcc 455 Query: 376 ggctccatccactacccgcggagcacccccgacacgtggccgg 418 || ||||||||||||||||||||||||||||||| |||||||| Sbjct: 456 gggtccatccactacccgcggagcacccccgacatgtggccgg 498
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 161 bits (81), Expect = 2e-36 Identities = 90/93 (96%) Strand = Plus / Minus Query: 316 aacgtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctcc 375 |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct: 8172540 aacgtgacgtacgaccaccgcgcggtggtcatcgacggcgtgcgacgcgtgctcgtctcc 8172481 Query: 376 ggctccatccactacccgcggagcacccccgac 408 || |||||||||||||||||||||||||||||| Sbjct: 8172480 gggtccatccactacccgcggagcacccccgac 8172448 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 345 catcgacggcgtgcgccgcgtgctcgtct 373 ||||| ||||| ||||||||||||||||| Sbjct: 31880370 catcgccggcgcgcgccgcgtgctcgtct 31880342
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 161 bits (81), Expect = 2e-36 Identities = 90/93 (96%) Strand = Plus / Minus Query: 316 aacgtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctcc 375 |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct: 8170375 aacgtgacgtacgaccaccgcgcggtggtcatcgacggcgtgcgacgcgtgctcgtctcc 8170316 Query: 376 ggctccatccactacccgcggagcacccccgac 408 || |||||||||||||||||||||||||||||| Sbjct: 8170315 gggtccatccactacccgcggagcacccccgac 8170283 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 345 catcgacggcgtgcgccgcgtgctcgtct 373 ||||| ||||| ||||||||||||||||| Sbjct: 31970886 catcgccggcgcgcgccgcgtgctcgtct 31970858
>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0019J12, complete sequence Length = 195583 Score = 161 bits (81), Expect = 2e-36 Identities = 90/93 (96%) Strand = Plus / Minus Query: 316 aacgtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctcc 375 |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct: 103970 aacgtgacgtacgaccaccgcgcggtggtcatcgacggcgtgcgacgcgtgctcgtctcc 103911 Query: 376 ggctccatccactacccgcggagcacccccgac 408 || |||||||||||||||||||||||||||||| Sbjct: 103910 gggtccatccactacccgcggagcacccccgac 103878
>dbj|AK119809.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-H02, full insert sequence Length = 3078 Score = 145 bits (73), Expect = 1e-31 Identities = 88/93 (94%) Strand = Plus / Plus Query: 316 aacgtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctcc 375 ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct: 2428 aacgtgacgtacgaccaccgcgctgtggtcatcgacggcgtgcgacgcgtgctcgtctcc 2487 Query: 376 ggctccatccactacccgcggagcacccccgac 408 || ||||||||||||||||||| |||||||||| Sbjct: 2488 gggtccatccactacccgcggaacacccccgac 2520
>ref|XM_464677.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2190 Score = 89.7 bits (45), Expect = 7e-15 Identities = 87/101 (86%) Strand = Plus / Plus Query: 318 cgtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctccgg 377 |||| ||||||||| ||| |||| |||||| ||||| |||||| | ||| ||||||| Sbjct: 111 cgtgtcgtacgaccgccggtcgctcgtcatcaacggccgccgccgcatcctcctctccgg 170 Query: 378 ctccatccactacccgcggagcacccccgacacgtggccgg 418 |||||||||||||||||||||||||||||| | |||||||| Sbjct: 171 ctccatccactacccgcggagcacccccgagatgtggccgg 211
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 83.8 bits (42), Expect = 4e-13 Identities = 78/90 (86%) Strand = Plus / Minus Query: 318 cgtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctccgg 377 |||| ||||||||| ||| |||| |||||| ||||| |||||| | ||| ||||||| Sbjct: 6659614 cgtgtcgtacgaccgccggtcgctcgtcatcaacggccgccgccgcatcctcctctccgg 6659555 Query: 378 ctccatccactacccgcggagcacccccga 407 |||||||||||||||||||||||||||||| Sbjct: 6659554 ctccatccactacccgcggagcacccccga 6659525
>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0027A02 Length = 140402 Score = 83.8 bits (42), Expect = 4e-13 Identities = 78/90 (86%) Strand = Plus / Minus Query: 318 cgtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctccgg 377 |||| ||||||||| ||| |||| |||||| ||||| |||||| | ||| ||||||| Sbjct: 93989 cgtgtcgtacgaccgccggtcgctcgtcatcaacggccgccgccgcatcctcctctccgg 93930 Query: 378 ctccatccactacccgcggagcacccccga 407 |||||||||||||||||||||||||||||| Sbjct: 93929 ctccatccactacccgcggagcacccccga 93900
>ref|NM_192994.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2484 Score = 71.9 bits (36), Expect = 2e-09 Identities = 45/48 (93%) Strand = Plus / Plus Query: 371 tctccggctccatccactacccgcggagcacccccgacacgtggccgg 418 ||||||||||||||||||||||| ||||||||||||| | |||||||| Sbjct: 128 tctccggctccatccactacccgaggagcacccccgagatgtggccgg 175
>dbj|AK103045.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117F22, full insert sequence Length = 3186 Score = 71.9 bits (36), Expect = 2e-09 Identities = 45/48 (93%) Strand = Plus / Plus Query: 371 tctccggctccatccactacccgcggagcacccccgacacgtggccgg 418 ||||||||||||||||||||||| ||||||||||||| | |||||||| Sbjct: 241 tctccggctccatccactacccgaggagcacccccgagatgtggccgg 288
>ref|XM_483667.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2877 Score = 67.9 bits (34), Expect = 2e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 371 tctccggctccatccactacccgcggagcacccccgacacgtggcc 416 ||||||||||||||||||||||||||||| | || ||||||||||| Sbjct: 210 tctccggctccatccactacccgcggagcccgccggacacgtggcc 255
>gb|AY459336.1| Oryza sativa (japonica cultivar-group) clone CL034244.2 R2R3-MYB gene region Length = 65993 Score = 67.9 bits (34), Expect = 2e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 371 tctccggctccatccactacccgcggagcacccccgacacgtggcc 416 ||||||||||||||||||||||||||||| | || ||||||||||| Sbjct: 58634 tctccggctccatccactacccgcggagcccgccggacacgtggcc 58679
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 67.9 bits (34), Expect = 2e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 371 tctccggctccatccactacccgcggagcacccccgacacgtggcc 416 ||||||||||||||||||||||||||||| | || ||||||||||| Sbjct: 27553597 tctccggctccatccactacccgcggagcccgccggacacgtggcc 27553642
>dbj|AP003912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1479_B11 Length = 105702 Score = 67.9 bits (34), Expect = 2e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 371 tctccggctccatccactacccgcggagcacccccgacacgtggcc 416 ||||||||||||||||||||||||||||| | || ||||||||||| Sbjct: 35887 tctccggctccatccactacccgcggagcccgccggacacgtggcc 35932
>dbj|AK102756.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107B05, full insert sequence Length = 2847 Score = 67.9 bits (34), Expect = 2e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 357 gcgccgcgtgctcgtctccggctccatccactacccgcggagcacccccgacacgtggcc 416 ||||||| | ||| |||||||||||||||||||||| || ||||||||||| | |||||| Sbjct: 449 gcgccgcatcctcatctccggctccatccactaccctcgcagcacccccgagatgtggcc 508 Query: 417 gg 418 || Sbjct: 509 gg 510
>dbj|AK069066.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007A22, full insert sequence Length = 2877 Score = 67.9 bits (34), Expect = 2e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 371 tctccggctccatccactacccgcggagcacccccgacacgtggcc 416 ||||||||||||||||||||||||||||| | || ||||||||||| Sbjct: 210 tctccggctccatccactacccgcggagcccgccggacacgtggcc 255
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 371 tctccggctccatccactacccgcggagcacccccga 407 ||||||||||||||||||||||| ||||||||||||| Sbjct: 22462950 tctccggctccatccactacccgaggagcacccccga 22462986
>dbj|AP003546.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0672C09 Length = 145655 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 371 tctccggctccatccactacccgcggagcacccccga 407 ||||||||||||||||||||||| ||||||||||||| Sbjct: 87088 tctccggctccatccactacccgaggagcacccccga 87124
>dbj|AP002908.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0013G02 Length = 163419 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 371 tctccggctccatccactacccgcggagcacccccga 407 ||||||||||||||||||||||| ||||||||||||| Sbjct: 160220 tctccggctccatccactacccgaggagcacccccga 160256
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 357 gcgccgcgtgctcgtctccggctccatccactacccgcggagcacccccga 407 ||||||| | ||| |||||||||||||||||||||| || ||||||||||| Sbjct: 21898013 gcgccgcatcctcatctccggctccatccactaccctcgcagcacccccga 21898063
>dbj|AP004729.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0006A22 Length = 190690 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 357 gcgccgcgtgctcgtctccggctccatccactacccgcggagcacccccga 407 ||||||| | ||| |||||||||||||||||||||| || ||||||||||| Sbjct: 120498 gcgccgcatcctcatctccggctccatccactaccctcgcagcacccccga 120548
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 315 caacgtgacgtacgaccaccgcgcgctggtcatcg 349 ||||||||||||||||||||||||| || |||||| Sbjct: 13826415 caacgtgacgtacgaccaccgcgcggtgctcatcg 13826381
>dbj|AK065546.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031G01, full insert sequence Length = 3036 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 315 caacgtgacgtacgaccaccgcgcgctggtcatcg 349 ||||||||||||||||||||||||| || |||||| Sbjct: 280 caacgtgacgtacgaccaccgcgcggtgctcatcg 314
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 315 caacgtgacgtacgaccaccgcgcgctggtcatcg 349 ||||||||||||||||||||||||| || |||||| Sbjct: 13780695 caacgtgacgtacgaccaccgcgcggtgctcatcg 13780661
>emb|BX664709.2|CNS09SBZ Oryza sativa chromosome 12, . BAC B1270G11 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155451 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 315 caacgtgacgtacgaccaccgcgcgctggtcatcg 349 ||||||||||||||||||||||||| || |||||| Sbjct: 142074 caacgtgacgtacgaccaccgcgcggtgctcatcg 142040
>ref|NM_195853.1| Oryza sativa (japonica cultivar-group) putative beta-galactosidase (OSJNBa0050M22.9), mRNA Length = 2427 Score = 52.0 bits (26), Expect = 0.001 Identities = 59/70 (84%) Strand = Plus / Plus Query: 347 tcgacggcgtgcgccgcgtgctcgtctccggctccatccactacccgcggagcacccccg 406 ||||||||| ||||||| | || |||| |||||||| |||||||| |||||||||||| Sbjct: 119 tcgacggcgagcgccgcatcgtcatctctggctccattcactaccccaggagcacccccg 178 Query: 407 acacgtggcc 416 | | |||||| Sbjct: 179 agatgtggcc 188
>gb|AC090483.3|AC090483 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0050M22, from chromosome 10, complete sequence Length = 145417 Score = 50.1 bits (25), Expect = 0.006 Identities = 52/61 (85%) Strand = Plus / Minus Query: 347 tcgacggcgtgcgccgcgtgctcgtctccggctccatccactacccgcggagcacccccg 406 ||||||||| ||||||| | || |||| |||||||| |||||||| |||||||||||| Sbjct: 135327 tcgacggcgagcgccgcatcgtcatctctggctccattcactaccccaggagcacccccg 135268 Query: 407 a 407 | Sbjct: 135267 a 135267
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 50.1 bits (25), Expect = 0.006 Identities = 52/61 (85%) Strand = Plus / Minus Query: 347 tcgacggcgtgcgccgcgtgctcgtctccggctccatccactacccgcggagcacccccg 406 ||||||||| ||||||| | || |||| |||||||| |||||||| |||||||||||| Sbjct: 9501843 tcgacggcgagcgccgcatcgtcatctctggctccattcactaccccaggagcacccccg 9501784 Query: 407 a 407 | Sbjct: 9501783 a 9501783 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 ctccagctgctgctcgtcgcc 116 ||||||||||||||||||||| Sbjct: 22543582 ctccagctgctgctcgtcgcc 22543562
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 50.1 bits (25), Expect = 0.006 Identities = 52/61 (85%) Strand = Plus / Minus Query: 347 tcgacggcgtgcgccgcgtgctcgtctccggctccatccactacccgcggagcacccccg 406 ||||||||| ||||||| | || |||| |||||||| |||||||| |||||||||||| Sbjct: 9507882 tcgacggcgagcgccgcatcgtcatctctggctccattcactaccccaggagcacccccg 9507823 Query: 407 a 407 | Sbjct: 9507822 a 9507822 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 ctccagctgctgctcgtcgcc 116 ||||||||||||||||||||| Sbjct: 22556050 ctccagctgctgctcgtcgcc 22556030
>dbj|AB086425.1| Pyrus communis PcGAL3 mRNA for pear beta-galactosidase3, complete cds Length = 3085 Score = 48.1 bits (24), Expect = 0.023 Identities = 45/52 (86%) Strand = Plus / Plus Query: 325 tacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctccg 376 ||||||||||| || || ||||||||||| ||||||| |||||||||||| Sbjct: 180 tacgaccaccgagctctaatcatcgacggcaagcgccgcatgctcgtctccg 231
>dbj|AB190363.1| Pyrus pyrifolia PpGAL2 mRNA for beta-D-galactosidase, complete cds Length = 3079 Score = 48.1 bits (24), Expect = 0.023 Identities = 45/52 (86%) Strand = Plus / Plus Query: 325 tacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctccg 376 ||||||||||| || || ||||||||||| ||||||| |||||||||||| Sbjct: 168 tacgaccaccgagctctaatcatcgacggcaagcgccgcatgctcgtctccg 219
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 48.1 bits (24), Expect = 0.023 Identities = 24/24 (100%) Strand = Plus / Minus Query: 258 cgcggcggcggccctgctgctcgc 281 |||||||||||||||||||||||| Sbjct: 3806828 cgcggcggcggccctgctgctcgc 3806805
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 334 cgcgcgctggtcatcgacggcg 355 |||||||||||||||||||||| Sbjct: 4040440 cgcgcgctggtcatcgacggcg 4040419
>ref|XM_542189.2| PREDICTED: Canis familiaris similar to signal peptide peptidase-like 2B isoform 2 (LOC485071), mRNA Length = 2643 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 271 ctgctgctcgcgctgctctgcctggc 296 ||||||||||| |||||||||||||| Sbjct: 1276 ctgctgctcgcactgctctgcctggc 1301
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 44.1 bits (22), Expect = 0.36 Identities = 28/30 (93%) Strand = Plus / Minus Query: 221 gcgacaaagcaatggcggccgtcggcaggc 250 ||||||| ||||||||||||| |||||||| Sbjct: 6229396 gcgacaaggcaatggcggccgccggcaggc 6229367
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 44.1 bits (22), Expect = 0.36 Identities = 28/30 (93%) Strand = Plus / Plus Query: 259 gcggcggcggccctgctgctcgcgctgctc 288 |||||||||| | ||||||||||||||||| Sbjct: 2066216 gcggcggcgggcgtgctgctcgcgctgctc 2066245
>ref|NM_184908.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1401 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 345 catcgacggcgtgcgccgcgtgctcgtct 373 ||||| ||||| ||||||||||||||||| Sbjct: 504 catcgccggcgcgcgccgcgtgctcgtct 532
>ref|NM_197900.1| Oryza sativa (japonica cultivar-group) putative cellulose synthase (OSJNBa0035H01.10), mRNA Length = 3384 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 ctccagctgctgctcgtcgcc 116 ||||||||||||||||||||| Sbjct: 1509 ctccagctgctgctcgtcgcc 1489
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 348 cgacggcgtgcgccgcgtgct 368 ||||||||||||||||||||| Sbjct: 2877171 cgacggcgtgcgccgcgtgct 2877191
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 264 ggcggccctgctgctcgcgct 284 ||||||||||||||||||||| Sbjct: 5318653 ggcggccctgctgctcgcgct 5318633
>ref|XM_532375.2| PREDICTED: Canis familiaris similar to TPA regulated locus (LOC475144), mRNA Length = 1509 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 270 cctgctgctcgcgctgctctg 290 ||||||||||||||||||||| Sbjct: 60 cctgctgctcgcgctgctctg 80
>gb|AC027037.6| Oryza sativa chromosome 10 BAC OSJNBa0035H01 genomic sequence, complete sequence Length = 64582 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 ctccagctgctgctcgtcgcc 116 ||||||||||||||||||||| Sbjct: 59300 ctccagctgctgctcgtcgcc 59280
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 266 cggccctgctgctcgcgctgctctg 290 ||||| ||||||||||||||||||| Sbjct: 228771 cggccatgctgctcgcgctgctctg 228747
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 348 cgacggcgtgcgccgcgtgct 368 ||||||||||||||||||||| Sbjct: 1055697 cgacggcgtgcgccgcgtgct 1055717
>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29 Length = 313800 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 262 gcggcggccctgctgctcgcg 282 ||||||||||||||||||||| Sbjct: 66011 gcggcggccctgctgctcgcg 65991
>emb|AJ717742.1| Triticum monococcum gyl-trans gene (partial), tRNA-Pro gene and betaGAL gene, clone 65B32 Length = 10571 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 371 tctccggctccatccactacccgcg 395 |||||||| |||||||||||||||| Sbjct: 2870 tctccggcgccatccactacccgcg 2894
>emb|AJ717740.1| Hordeum vulgare betaGAL1 gene, tRNA-Pro pseudogene, ORF_1 pseudogene and tnp2-like1 gene (partial) Length = 10640 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Plus Query: 371 tctccggctccatccactacccgcggagcacccccga 407 |||| ||| |||||||||||||||| ||| ||||||| Sbjct: 2159 tctcgggcgccatccactacccgcgcagcccccccga 2195
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 251 tgccgagcgcggcggcggccc 271 ||||||||||||||||||||| Sbjct: 4118766 tgccgagcgcggcggcggccc 4118786 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 cggggacgtcggcggcgacc 315 |||||||||||||||||||| Sbjct: 5397202 cggggacgtcggcggcgacc 5397183
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 348 cgacggcgtgcgccgcgtgct 368 ||||||||||||||||||||| Sbjct: 649489 cgacggcgtgcgccgcgtgct 649509
>tpg|BK000089.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group) cellulose synthase-like D1 gene, complete cds Length = 4188 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 ctccagctgctgctcgtcgcc 116 ||||||||||||||||||||| Sbjct: 1778 ctccagctgctgctcgtcgcc 1758
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 371 tctccggctccatccactacccgcggagc 399 |||||||| ||||||||||||| |||||| Sbjct: 20929067 tctccggcgccatccactacccacggagc 20929095
>dbj|AP006149.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1274F11 Length = 171257 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 371 tctccggctccatccactacccgcggagc 399 |||||||| ||||||||||||| |||||| Sbjct: 21156 tctccggcgccatccactacccacggagc 21184
>dbj|AK119414.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-132-F12, full insert sequence Length = 2998 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 371 tctccggctccatccactacccgcggagc 399 |||||||| ||||||||||||| |||||| Sbjct: 268 tctccggcgccatccactacccacggagc 296
>gb|AC091494.9| Oryza sativa chromosome 3 BAC OSJNBa0070N04 genomic sequence, complete sequence Length = 150663 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 345 catcgacggcgtgcgccgcgtgctcgtct 373 ||||| ||||| ||||||||||||||||| Sbjct: 81623 catcgccggcgcgcgccgcgtgctcgtct 81595
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 gcggcggcggccctgctgct 278 |||||||||||||||||||| Sbjct: 556863 gcggcggcggccctgctgct 556882
>gb|AC122309.5| Mus musculus BAC clone RP23-293G2 from chromosome 14, complete sequence Length = 208443 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 ctcgtctccggctccatcca 386 |||||||||||||||||||| Sbjct: 131970 ctcgtctccggctccatcca 131989
>gb|DQ213916.1| Taeniopygia guttata clone 0058P0058F05 macrophage migration inhibitory factor (MIF) variant 1-like mRNA, complete sequence Length = 1030 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 256 agcgcggcggcggccctgctgctc 279 |||||||||||||||| ||||||| Sbjct: 29 agcgcggcggcggccccgctgctc 52
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 gccgagcgcggcggcggccc 271 |||||||||||||||||||| Sbjct: 1535263 gccgagcgcggcggcggccc 1535244
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 gcaggctgccgagcgcggcg 264 |||||||||||||||||||| Sbjct: 2146268 gcaggctgccgagcgcggcg 2146249
>ref|XM_530663.1| PREDICTED: Pan troglodytes LOC460813 (LOC460813), mRNA Length = 1057 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 gccctgctgctcgcgctgct 287 |||||||||||||||||||| Sbjct: 501 gccctgctgctcgcgctgct 482
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 347 tcgacggcgtgcgccgcgtgctcg 370 ||||||||| |||||||||||||| Sbjct: 2867905 tcgacggcgggcgccgcgtgctcg 2867882
>gb|AC095018.2| Drosophila melanogaster clone BACR24L18, complete sequence Length = 163116 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 gcgtgctcgtctccggctcc 381 |||||||||||||||||||| Sbjct: 16918 gcgtgctcgtctccggctcc 16899
>gb|BC078644.1| Mus musculus dachshund 1 (Drosophila), mRNA (cDNA clone IMAGE:6513381), partial cds Length = 4829 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 ctcgtctccggctccatcca 386 |||||||||||||||||||| Sbjct: 101 ctcgtctccggctccatcca 120
>ref|NM_007826.2| Mus musculus dachshund 1 (Drosophila) (Dach1), transcript variant 1, mRNA Length = 5225 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 ctcgtctccggctccatcca 386 |||||||||||||||||||| Sbjct: 345 ctcgtctccggctccatcca 364
>ref|NM_001038610.1| Mus musculus dachshund 1 (Drosophila) (Dach1), transcript variant 2, mRNA Length = 5069 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 ctcgtctccggctccatcca 386 |||||||||||||||||||| Sbjct: 345 ctcgtctccggctccatcca 364
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 347 tcgacggcgtgcgccgcgtgctcg 370 ||||||||| |||||||||||||| Sbjct: 240579 tcgacggcgggcgccgcgtgctcg 240602
>gb|BC059934.1| Mus musculus cDNA clone IMAGE:6826750 Length = 5088 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 ctcgtctccggctccatcca 386 |||||||||||||||||||| Sbjct: 345 ctcgtctccggctccatcca 364
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 cggccctgctgctcgcgctg 285 |||||||||||||||||||| Sbjct: 2534797 cggccctgctgctcgcgctg 2534816 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 354 cgtgcgccgcgtgctcgtctccgg 377 ||||||||||||||||||| |||| Sbjct: 629266 cgtgcgccgcgtgctcgtcgccgg 629289
>gb|AC026887.9| Homo sapiens chromosome 10 clone RP11-544P1, complete sequence Length = 187495 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 267 ggccctgctgctcgcgctgctctg 290 |||||||||||||| ||||||||| Sbjct: 133930 ggccctgctgctcgggctgctctg 133907
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 ggtcatcgacggcgtgcgcc 361 |||||||||||||||||||| Sbjct: 528503 ggtcatcgacggcgtgcgcc 528484
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 347 tcgacggcgtgcgccgcgtgctcg 370 ||||||||| |||||||||||||| Sbjct: 17799 tcgacggcgggcgccgcgtgctcg 17822
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 327 cgaccaccgcgcgctggtcatcga 350 ||||||||||||||||||| |||| Sbjct: 247788 cgaccaccgcgcgctggtcgtcga 247811
>gb|AY098636.1| Mus musculus testhymin mRNA, complete cds Length = 6258 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ctgccgagcgcggcggcggc 269 |||||||||||||||||||| Sbjct: 590 ctgccgagcgcggcggcggc 571
>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome Length = 230138 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 cggggacgtcggcggcgacc 315 |||||||||||||||||||| Sbjct: 6117 cggggacgtcggcggcgacc 6098
>dbj|AK139060.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730010G10 product:dachshund 1 (Drosophila), full insert sequence Length = 4396 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 ctcgtctccggctccatcca 386 |||||||||||||||||||| Sbjct: 568 ctcgtctccggctccatcca 587
>gb|AF261693.1|AF261693 Rubus alceifolius microsatellite CIRRIV2A8 sequence Length = 501 Score = 40.1 bits (20), Expect = 5.6 Identities = 56/68 (82%) Strand = Plus / Plus Query: 325 tacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctccggctccatc 384 ||||||||||| || ||| ||||||| ||| |||||| ||||| |||||| | |||| Sbjct: 426 tacgaccaccgagctctgatcatcgatggcaaccgccgcatgctcatctccgccggcatc 485 Query: 385 cactaccc 392 |||||||| Sbjct: 486 cactaccc 493
>gb|BC052005.1| Mus musculus dachshund 1 (Drosophila), mRNA (cDNA clone IMAGE:6408715), complete cds Length = 2643 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 ctcgtctccggctccatcca 386 |||||||||||||||||||| Sbjct: 341 ctcgtctccggctccatcca 360
>gb|AC091636.1|AC091636 Drosophila melanogaster, chromosome 3R, region 89E-89E, BAC clone BACR03M20, complete sequence Length = 175335 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 gcgtgctcgtctccggctcc 381 |||||||||||||||||||| Sbjct: 45567 gcgtgctcgtctccggctcc 45586
>gb|AY641455.1| Burkholderia glumae DNA binding protein (toxJ), putative transposase, putative outer membrane protein OprM precursor (toxI), probable RND efflux transporter (toxH), probable RND efflux membrane-fusion protein precursor (toxG), hypothetical protein (toxF), LysR type regulatory protein (toxR), putative ubiquinone/menaquinone biosynthesis methyltransferase (toxA), putative GTP cyclohydrolase II (toxB), WD repeat portein (toxC), hypothetical protein (toxD), putative deaminase (toxE), and putative transposase genes, complete cds Length = 16987 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 gcggcggccctgctgctcgc 281 |||||||||||||||||||| Sbjct: 3749 gcggcggccctgctgctcgc 3730
>gb|AC156290.10| Mus musculus 6 BAC RP24-267I24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 144883 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ctgccgagcgcggcggcggc 269 |||||||||||||||||||| Sbjct: 31445 ctgccgagcgcggcggcggc 31426
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 gcggcggccctgctgctcgc 281 |||||||||||||||||||| Sbjct: 72763 gcggcggccctgctgctcgc 72744
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 cggcgtgcgccgcgtgctcg 370 |||||||||||||||||||| Sbjct: 361626 cggcgtgcgccgcgtgctcg 361607
>ref|XM_575380.1| PREDICTED: Rattus norvegicus similar to testhymin (LOC500026), mRNA Length = 2369 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ctgccgagcgcggcggcggc 269 |||||||||||||||||||| Sbjct: 212 ctgccgagcgcggcggcggc 193
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 tggcggggacgtcggcggcg 312 |||||||||||||||||||| Sbjct: 4413242 tggcggggacgtcggcggcg 4413261
>gb|AF129510.1|AF129510 Mus musculus DACH protein (Dach) mRNA, complete cds Length = 2704 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 ctcgtctccggctccatcca 386 |||||||||||||||||||| Sbjct: 329 ctcgtctccggctccatcca 348
>gb|AF102547.1|AF102547 Mus musculus dachshund (Dach) mRNA, complete cds Length = 2256 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 ctcgtctccggctccatcca 386 |||||||||||||||||||| Sbjct: 111 ctcgtctccggctccatcca 130
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 tgccgagcgcggcggcggcc 270 |||||||||||||||||||| Sbjct: 749571 tgccgagcgcggcggcggcc 749590
>gb|AF110185.1|AF110185 Burkholderia pseudomallei strain 1026b DbhB (dbhB), general secretory pathway protein D (gspD), general secretory pathway protein E (gspE), general secretory pathway protein F (gspF), GspC (gspC), general secretory pathway protein G (gspG), general secretory pathway protein H (gspH), general secretory pathway protein I (gspI), general secretory pathway protein J (gspJ), general secretory pathway protein K (gspK), general secretory pathway protein L (gspL), general secretory pathway protein M (gspM), and general secretory pathway protein N (gspN) genes, complete cds; and unknown genes Length = 20302 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 347 tcgacggcgtgcgccgcgtgctcg 370 ||||||||| |||||||||||||| Sbjct: 13008 tcgacggcgggcgccgcgtgctcg 13031
>gb|AE003715.4| Drosophila melanogaster chromosome 3R, section 53 of 118 of the complete sequence Length = 228547 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 gcgtgctcgtctccggctcc 381 |||||||||||||||||||| Sbjct: 140776 gcgtgctcgtctccggctcc 140795
>gb|AF090437.1|AF090437 Mus musculus dachshund variant 2 (Dach) mRNA, complete cds Length = 2100 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 ctcgtctccggctccatcca 386 |||||||||||||||||||| Sbjct: 111 ctcgtctccggctccatcca 130
>gb|AF090436.1|AF090436 Mus musculus dachshund variant 1 (Dach) mRNA, complete cds Length = 2256 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 ctcgtctccggctccatcca 386 |||||||||||||||||||| Sbjct: 111 ctcgtctccggctccatcca 130
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 347 tcgacggcgtgcgccgcgtgctcg 370 ||||||||| |||||||||||||| Sbjct: 17735 tcgacggcgggcgccgcgtgctcg 17758
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 gcggcggccctgctgctcgc 281 |||||||||||||||||||| Sbjct: 3137752 gcggcggccctgctgctcgc 3137733
>gb|U31961.1|DMU31961 Drosophila melanogaster bithorax complex (BX-C), complete sequence Length = 338234 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 gcgtgctcgtctccggctcc 381 |||||||||||||||||||| Sbjct: 42942 gcgtgctcgtctccggctcc 42923
>gb|L07835.1|DROABDB Drosophila melanogaster (clone DS07696) Abd-B gene Length = 80423 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 gcgtgctcgtctccggctcc 381 |||||||||||||||||||| Sbjct: 42942 gcgtgctcgtctccggctcc 42923
>gb|AC090053.5| Leishmania major strain Friedlin chromosome Unknown clone P323, complete sequence Length = 66637 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 gccctgctgctcgcgctgct 287 |||||||||||||||||||| Sbjct: 25565 gccctgctgctcgcgctgct 25584 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,649,509 Number of Sequences: 3902068 Number of extensions: 2649509 Number of successful extensions: 57776 Number of sequences better than 10.0: 96 Number of HSP's better than 10.0 without gapping: 101 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52445 Number of HSP's gapped (non-prelim): 5330 length of query: 421 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 399 effective length of database: 17,147,199,772 effective search space: 6841732709028 effective search space used: 6841732709028 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
