Clone Information

BLAST Search Result

Clone Name	bastl54c05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	MAPT_ARATH (Q9T041) Microtubule-associated protein TORTIFOLIA1 (...	55	7e-08
2	SWC4_NEUCR (Q870Q1) SWR1-complex protein 4	35	0.12
3	MPC1_RALEU (P17295) Metapyrocatechase 1 (EC 1.13.11.2) (CatO2ase...	33	0.27
4	LIPB_DEIRA (Q9RWA5) Lipoyltransferase (EC 2.3.1.-) (Lipoyl-[acyl...	32	1.0
5	WASF2_HUMAN (Q9Y6W5) Wiskott-Aldrich syndrome protein family mem...	31	1.7
6	CRF_HUMAN (P06850) Corticoliberin precursor (Corticotropin-relea...	31	1.7
7	WASF2_MOUSE (Q8BH43) Wiskott-Aldrich syndrome protein family mem...	31	1.7
8	WASL_HUMAN (O00401) Neural Wiskott-Aldrich syndrome protein (N-W...	25	1.9
9	XYLB_STRCO (Q9RK00) Xylulose kinase (EC 2.7.1.17) (Xylulokinase)	30	2.3
10	ITIH2_PIG (O02668) Inter-alpha-trypsin inhibitor heavy chain H2 ...	30	2.3
11	WNK1_MOUSE (P83741) Serine/threonine-protein kinase WNK1 (EC 2.7...	30	2.3
12	KCNA5_HUMAN (P22460) Potassium voltage-gated channel subfamily A...	30	2.3
13	WNK1_RAT (Q9JIH7) Serine/threonine-protein kinase WNK1 (EC 2.7.1...	30	2.3
14	RXRB_CANFA (Q5TJF7) Retinoic acid receptor RXR-beta (Retinoid X ...	30	2.3
15	WASL_BOVIN (Q95107) Neural Wiskott-Aldrich syndrome protein (N-W...	25	2.4
16	WASL_RAT (O08816) Neural Wiskott-Aldrich syndrome protein (N-WASP)	25	2.4
17	WASL_MOUSE (Q91YD9) Neural Wiskott-Aldrich syndrome protein (N-W...	25	2.4
18	GAG_MSVFR (P29175) Gag polyprotein [Contains: Core protein p15; ...	30	2.9
19	GAG_FSVST (P03338) Gag polyprotein [Contains: Core protein p15; ...	30	2.9
20	MYBPH_CHICK (Q05623) Myosin-binding protein H (MyBP-H) (H-protei...	30	2.9
21	GAG_MLVMO (P03332) Gag polyprotein [Contains: Core protein p15; ...	30	2.9
22	GAG_FSVHZ (P04322) Gag polyprotein [Contains: Core protein p15; ...	30	2.9
23	GAG_MLVAV (P03336) Gag polyprotein [Contains: Core protein p15; ...	30	2.9
24	GAG_FSVMD (P03340) Gag polyprotein [Contains: Core protein p15; ...	30	2.9
25	GAG_MLVAB (P03333) Gag polyprotein [Contains: Core protein p15; ...	30	2.9
26	ZMPB_STRPN (Q9L7Q2) Zinc metalloprotease zmpB precursor (EC 3.4....	30	2.9
27	IL2RA_PIG (O02733) Interleukin-2 receptor alpha chain precursor ...	30	2.9
28	GAG_FRSFV (P03331) Gag polyprotein [Contains: Core protein p15; ...	30	2.9
29	RXRB_MOUSE (P28704) Retinoic acid receptor RXR-beta (Retinoid X ...	30	2.9
30	Y4MM_RHISN (P55572) Hypothetical protein y4mM precursor	30	2.9
31	GAG_FLV (P10262) Gag polyprotein [Contains: Core protein p15; Co...	30	2.9
32	RXRB_HUMAN (P28702) Retinoic acid receptor RXR-beta (Retinoid X ...	30	2.9
33	SAM68_CHICK (Q8UUW7) KH domain-containing, RNA-binding, signal t...	30	3.8
34	AFSK_STRCO (P54741) Serine/threonine protein kinase afsK (EC 2.7...	30	3.8
35	LITAF_BRARE (Q6GMG8) Lipopolysaccharide-induced tumor necrosis f...	29	5.0
36	IFD2_CAEEL (Q19782) Intermediate filament protein ifd-2 (Interme...	29	5.0
37	UCP8_SCHPO (O94685) UBA domain-containing protein 8	29	6.6
38	POL2_RRVS (P36324) RNA2 polyprotein (P2) [Contains: P2A protein ...	29	6.6
39	GAG_MSVMT (P32594) Gag polyprotein [Contains: Core protein p15; ...	29	6.6
40	GAG_MSVMO (P03334) Gag polyprotein R65 [Contains: Core protein p...	29	6.6
41	TAF6_RAT (Q63801) Transcription initiation factor TFIID subunit ...	29	6.6
42	IE18_PRVIF (P11675) Immediate-early protein IE180	29	6.6
43	ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (T...	29	6.6
44	PALST_EUGGR (P84739) Photoactivated adenylate cyclase alpha-subu...	29	6.6
45	OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)	29	6.6
46	KCND3_RAT (Q62897) Potassium voltage-gated channel subfamily D m...	28	8.6
47	KCND3_RABIT (Q9TTT5) Potassium voltage-gated channel subfamily D...	28	8.6
48	KCND3_MOUSE (Q9Z0V1) Potassium voltage-gated channel subfamily D...	28	8.6
49	KCND3_HUMAN (Q9UK17) Potassium voltage-gated channel subfamily D...	28	8.6
50	SWR1_ASPFU (Q4WAS9) Helicase swr1 (EC 3.6.1.-)	28	8.6
51	HLX1_MOUSE (Q61670) Homeobox protein HLX1	28	8.6
52	FREA_HUMAN (O43638) Forkhead-related transcription factor 10 (FR...	28	8.6
53	ZYX_MOUSE (Q62523) Zyxin	28	8.6
54	DHSA_MACFA (Q8HXW3) Succinate dehydrogenase [ubiquinone] flavopr...	28	8.6
55	DHSA_HUMAN (P31040) Succinate dehydrogenase [ubiquinone] flavopr...	28	8.6
56	GAG_MLVF5 (P26807) Gag polyprotein (Core polyprotein) [Contains:...	28	8.6
57	TAF6_HUMAN (P49848) Transcription initiation factor TFIID subuni...	28	8.6
58	SYL_AGRT5 (Q8UBV2) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-...	28	8.6

>MAPT_ARATH (Q9T041) Microtubule-associated protein TORTIFOLIA1|
           (Microtubule-associated protein SPIRAL2) (Protein
           CONVOLUTA)
          Length = 864

 Score = 55.5 bits (132), Expect = 7e-08
 Identities = 23/61 (37%), Positives = 44/61 (72%)
 Frame = +2

Query: 275 SSTAAPSKGKAAFELKHKLVQALNKIADRDTYQIGLSELQTTVDALAPDMVGPFLSCVID 454
           S++ + +  +A  ELK K++ +++K+ADRDTYQI + +L+ T+ +L P+ +  FL+C+ D
Sbjct: 28  SNSGSLTSFQAMVELKQKILTSISKLADRDTYQIAVEDLEKTIQSLTPETLPMFLNCLYD 87

Query: 455 T 457
           +
Sbjct: 88  S 88

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>SWC4_NEUCR (Q870Q1) SWR1-complex protein 4|
          Length = 771

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -3

Query: 128 AAAVARSPSVRPSVRPARSLSAGESCLPGDKHKPPIR 18
           AAAVA +P V P+     SL+A  +    D H+PP+R
Sbjct: 359 AAAVAAAPEVPPAASRRESLAASSTAGANDHHEPPVR 395

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>MPC1_RALEU (P17295) Metapyrocatechase 1 (EC 1.13.11.2) (CatO2ase) (Catechol|
           2,3-dioxygenase I)
          Length = 313

 Score = 33.5 bits (75), Expect = 0.27
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -3

Query: 113 RSPSVRPSVRPARSLSAGESCLPGDKHKPPIRPE 12
           R+PS   + R AR+++A +S + GD H  P+ PE
Sbjct: 201 RNPSPESAARQARTVAAAKSFVAGDSHLHPLNPE 234

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>LIPB_DEIRA (Q9RWA5) Lipoyltransferase (EC 2.3.1.-) (Lipoyl-[acyl-carrier|
           protein]-protein-N-lipoyltransferase) (Lipoate-protein
           ligase B)
          Length = 336

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = -3

Query: 251 CGDELAGVGLSGWCRRGRMPSSSHGGEGWRW*VRHHPWL-DPAAAVARS-PSVRPSVRPA 78
           C    A   LS +C  GR       G+GWRW     P L  P   V +S P  RP  +P 
Sbjct: 24  CASRTAARKLSLYCSEGRTRCGMGQGKGWRWPGHRPPGLPSPTNRVGQSVPKWRP--QPH 81

Query: 77  RSLSAGES 54
           ++   G +
Sbjct: 82  KAAGGGRT 89

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>WASF2_HUMAN (Q9Y6W5) Wiskott-Aldrich syndrome protein family member 2|
           (WASP-family protein member 2) (WAVE-2 protein)
           (Verprolin homology domain-containing protein 2)
          Length = 498

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +2

Query: 116 PPPPLDQAMGGAGPTTSSPHPHG 184
           PPPPL Q  GGA P    P P G
Sbjct: 379 PPPPLSQPTGGAPPPPPPPPPPG 401

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>CRF_HUMAN (P06850) Corticoliberin precursor (Corticotropin-releasing factor)|
           (CRF) (Corticotropin-releasing hormone)
          Length = 196

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = +1

Query: 19  RIGGLCLSPGRQLSPAESERAGRTDGRTDGERATA 123
           R+G L  SP   LSPA S  AG +  R   E+ATA
Sbjct: 75  RLGNLNKSPAAPLSPASSLLAGGSGSRPSPEQATA 109

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>WASF2_MOUSE (Q8BH43) Wiskott-Aldrich syndrome protein family member 2|
           (WASP-family protein member 2) (WAVE-2 protein)
          Length = 497

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +2

Query: 116 PPPPLDQAMGGAGPTTSSPHPHG 184
           PPPPL Q  GGA P    P P G
Sbjct: 376 PPPPLSQPSGGAPPPPPPPPPPG 398

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>WASL_HUMAN (O00401) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 505

 Score = 25.4 bits (54), Expect(2) = 1.9
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 159 PPPALTPMGR*RHPPPSAPATETDP 233
           PPP+  P      PPPS P+    P
Sbjct: 312 PPPSRAPTAAPPPPPPSRPSVAVPP 336



 Score = 23.9 bits (50), Expect(2) = 1.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 101 RTESAPPPPLDQAMGGAGPTTSSPHPHG 184
           R ++ PPPP   + GG  P    PH  G
Sbjct: 273 RRQAPPPPP--PSRGGPPPPPPPPHNSG 298

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>XYLB_STRCO (Q9RK00) Xylulose kinase (EC 2.7.1.17) (Xylulokinase)|
          Length = 481

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = -3

Query: 272 SSRRKKRCGDELAGVGLSGWCRR-GRMPSSSHGGEGWRW*VRHHPWLDPAAAVARSP 105
           S+ + +R  DEL G     W  R G +PS+S     W W   H P    A    R P
Sbjct: 105 SAPQARRLIDELGGA--KAWAERTGSVPSASFTVTKWAWLTEHEPEAARAVKAVRLP 159

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>ITIH2_PIG (O02668) Inter-alpha-trypsin inhibitor heavy chain H2 precursor|
           (ITI heavy chain H2) (Inter-alpha-inhibitor heavy chain
           2)
          Length = 935

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 129 WIKPWVVPDLPPPALTPMGR*RHPPPSAPATETDPRQLV 245
           W+ P   P +P PA+ P      PPP     E DP  ++
Sbjct: 658 WVNPLPTPRVPLPAVGPSVIEATPPPHVMRVENDPHFII 696

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>WNK1_MOUSE (P83741) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1) (Protein|
            kinase with no lysine 1) (Protein kinase,
            lysine-deficient 1)
          Length = 2377

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
 Frame = +1

Query: 46   GRQLSPAESERAGRTDGRTDGERATAAAGSSHGWCRTYHLQPSPPWEDEGIRP-----LL 210
            GR+  P +S+ +  +   + G ++   +G+  G   T  L P       G  P      L
Sbjct: 2117 GRRRRPTKSKGSKSSRSSSLGNKSPQLSGNLSGQSGTSVLHPQQTLHPAGNTPETGHNQL 2176

Query: 211  HQPLRPTPASSSPHRFFRRD 270
             QPL+P+P+S + +  F  D
Sbjct: 2177 LQPLKPSPSSDNLYSAFTSD 2196

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>KCNA5_HUMAN (P22460) Potassium voltage-gated channel subfamily A member 5|
           (Voltage-gated potassium channel subunit Kv1.5) (HK2)
           (HPCN1)
          Length = 613

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
 Frame = +1

Query: 88  TDGRTDGERATAAAGSSHGWCRTYHLQPSPPWEDEGIRPL------LHQPLRPTP 234
           T G +DG +  A  G          ++P PP  D G+RPL      L +P RP P
Sbjct: 39  TAGLSDGPKEPAPKGRGAQRDADSGVRPLPPLPDPGVRPLPPLPEELPRPRRPPP 93

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>WNK1_RAT (Q9JIH7) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1) (Protein|
            kinase with no lysine 1) (Protein kinase,
            lysine-deficient 1)
          Length = 2126

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
 Frame = +1

Query: 46   GRQLSPAESERAGRTDGRTDGERATAAAGSSHGWCRTYHLQPSPPWEDEGIRP-----LL 210
            GR+  P +S+ +  +   + G ++   +G+  G   T  L P       G  P      L
Sbjct: 1866 GRRRRPTKSKGSKSSRSSSLGNKSPQLSGNLSGQSGTSVLNPQQTLHPPGNTPETGHNQL 1925

Query: 211  HQPLRPTPASSSPHRFFRRD 270
             QPL+P+P+S + +  F  D
Sbjct: 1926 LQPLKPSPSSDNLYSAFTSD 1945

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>RXRB_CANFA (Q5TJF7) Retinoic acid receptor RXR-beta (Retinoid X receptor beta)|
          Length = 533

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -3

Query: 221 SGWCRRGRMPSSSHGGEGWRW*VRHHPWLDPAAAVARSPSVRPSVRP 81
           +G C    +    H G   RW  R  PWLDPAAA A + +      P
Sbjct: 16  AGQCGPVGVRKEMHCGVASRW-RRRRPWLDPAAAAAAAAAAGEQQTP 61

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>WASL_BOVIN (Q95107) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 505

 Score = 24.6 bits (52), Expect(2) = 2.4
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +3

Query: 159 PPPALTPMGR*RHPPPSAPATETDP 233
           PPP+  P      PPPS P     P
Sbjct: 312 PPPSRAPTAAPPPPPPSRPGVGAPP 336



 Score = 24.3 bits (51), Expect(2) = 2.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 101 RTESAPPPPLDQAMGGAGPTTSSPHPHG 184
           R ++ PPPP   + GG  P    PH  G
Sbjct: 273 RRQAPPPPP--PSRGGPPPPPPPPHSSG 298

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>WASL_RAT (O08816) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 501

 Score = 24.6 bits (52), Expect(2) = 2.4
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +3

Query: 159 PPPALTPMGR*RHPPPSAPATETDP 233
           PPP+  P      PPPS P     P
Sbjct: 309 PPPSRAPTAAPPPPPPSRPGVVVPP 333



 Score = 24.3 bits (51), Expect(2) = 2.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 101 RTESAPPPPLDQAMGGAGPTTSSPHPHG 184
           R ++ PPPP   + GG  P    PH  G
Sbjct: 270 RRQAPPPPP--PSRGGPPPPPPPPHSSG 295

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>WASL_MOUSE (Q91YD9) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 501

 Score = 24.6 bits (52), Expect(2) = 2.4
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +3

Query: 159 PPPALTPMGR*RHPPPSAPATETDP 233
           PPP+  P      PPPS P     P
Sbjct: 309 PPPSRAPTAAPPPPPPSRPGVVVPP 333



 Score = 24.3 bits (51), Expect(2) = 2.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 101 RTESAPPPPLDQAMGGAGPTTSSPHPHG 184
           R ++ PPPP   + GG  P    PH  G
Sbjct: 270 RRQAPPPPP--PSRGGPPPPPPPPHSSG 295

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>GAG_MSVFR (P29175) Gag polyprotein [Contains: Core protein p15; Inner coat|
           protein p12; Core shell protein p30]
          Length = 309

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 129 WIKPWVVPDLPPPALTPMGR*RHPPPSAPATETDPR 236
           W+KP+V P L P    P+       PS P+T+  PR
Sbjct: 95  WVKPFVSPKLSPSPTAPI------LPSGPSTQPPPR 124

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>GAG_FSVST (P03338) Gag polyprotein [Contains: Core protein p15; Core protein|
           p12; Core protein p30]
          Length = 371

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 129 WIKPWVVPDLPPPALTPMGR*RHPPPSAPATET 227
           W++P++ P  PP   TP+ +   P PSAP T +
Sbjct: 170 WVRPFLPPPKPP---TPLPQPLSPQPSAPLTSS 199

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>MYBPH_CHICK (Q05623) Myosin-binding protein H (MyBP-H) (H-protein) (86 kDa|
           protein)
          Length = 537

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 131 PAAAVARSPSVRPSVRPARSLSAGESCLPGDKHKPPIRPE 12
           PA A  ++P   P  +PA +   G +  P ++H PP + E
Sbjct: 20  PAPASKKAPEPAPKEKPAPTPKEGHAPTPKEEHAPPPKEE 59

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>GAG_MLVMO (P03332) Gag polyprotein [Contains: Core protein p15; Inner coat|
           protein p12; Core shell protein p30; Nucleoprotein p10]
          Length = 537

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 129 WIKPWVVPDLPPPALTPMGR*RHPPPSAPATETDP 233
           W+KP+V P  PPP           PPSAP+   +P
Sbjct: 95  WVKPFVHPKPPPPL----------PPSAPSLPLEP 119

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>GAG_FSVHZ (P04322) Gag polyprotein [Contains: Core protein p15; Core protein|
           p12; Core protein p30] (Fragment)
          Length = 414

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 129 WIKPWVVPDLPPPALTPMGR*RHPPPSAPATET 227
           W++P++ P  PP   TP+ +   P PSAP T +
Sbjct: 170 WVRPFLPPPKPP---TPLPQPLSPQPSAPLTSS 199

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>GAG_MLVAV (P03336) Gag polyprotein [Contains: Core protein p15; Inner coat|
           protein p12; Core shell protein p30; Nucleoprotein p10]
          Length = 536

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 129 WIKPWVVPDLPPPALTPMGR*RHPPPSAPATETDPR 236
           W+KP+V P L P    P+       PS P+T+  PR
Sbjct: 95  WVKPFVSPKLSPSPTAPI------LPSGPSTQPPPR 124

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>GAG_FSVMD (P03340) Gag polyprotein [Contains: Core protein p15; Core protein|
           p12; Core protein p30; Core protein p10]
          Length = 536

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 129 WIKPWVVPDLPPPALTPMGR*RHPPPSAPATET 227
           W++P++ P  PP   TP+ +   P PSAP T +
Sbjct: 173 WVRPFLPPPKPP---TPLPQPLSPQPSAPPTSS 202

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>GAG_MLVAB (P03333) Gag polyprotein [Contains: Core protein p15; Inner coat|
           protein p12; Core shell protein p30]
          Length = 234

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 129 WIKPWVVPDLPPPALTPMGR*RHPPPSAPATETDP 233
           W+KP+V P  PPP           PPSAP+   +P
Sbjct: 95  WVKPFVHPKPPPPL----------PPSAPSLPLEP 119

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>ZMPB_STRPN (Q9L7Q2) Zinc metalloprotease zmpB precursor (EC 3.4.24.-)|
          Length = 1906

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -3

Query: 131 PAAAVARSPSVRPSVRPARSLS---AGESCLPGDKHKPPIRPEEK 6
           P   VA  P  +PS +PA       AGE   P +  K P+ PE++
Sbjct: 256 PEEKVAVKPESQPSDKPAEESKVEQAGEPVAPREDEKAPVEPEKQ 300

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>IL2RA_PIG (O02733) Interleukin-2 receptor alpha chain precursor (IL-2|
           receptor alpha subunit) (IL-2-RA) (IL2-RA) (CD25
           antigen)
          Length = 270

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +1

Query: 43  PGRQLSPAESERAGRTDGRTDGERATAAAGSSHGWCRTYHLQPSPPWEDEGIRPLLH 213
           P +Q++P   E+  R    T G+       +  G C+       PPWE E ++ + H
Sbjct: 91  PVKQVTPRPEEQKERKTTETQGQMQPPNQANLPGHCKE-----PPPWEHESLKRVYH 142

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>GAG_FRSFV (P03331) Gag polyprotein [Contains: Core protein p15; Inner coat|
           protein p12]
          Length = 186

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 129 WIKPWVVPDLPPPALTPMGR*RHPPPSAPATETDPR 236
           W+KP+V P L P    P+       PS P+T+  PR
Sbjct: 95  WVKPFVSPKLSPSPTAPI------LPSGPSTQPPPR 124

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>RXRB_MOUSE (P28704) Retinoic acid receptor RXR-beta (Retinoid X receptor beta)|
           (MHC class I regulatory element-binding protein
           H-2RIIBP)
          Length = 520

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -3

Query: 221 SGWCRRGRMPSSSHGGEGWRW*VRHHPWLDPAAAVA 114
           +G C    +    H G   RW  R  PWLDPAAA A
Sbjct: 16  AGQCGPVGVRKEMHCGVASRW-RRRRPWLDPAAAAA 50

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>Y4MM_RHISN (P55572) Hypothetical protein y4mM precursor|
          Length = 541

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = -3

Query: 179 GGEGWRW*VRHHPWLDPAAAVARSPSVRPSVRPAR---SLSAGESCLPGD 39
           GGE  ++ +    +L  ++AV  +P++   VRPAR   +L+ G    PG+
Sbjct: 20  GGETMKYEITRRRFLAASSAVLAAPAIVTMVRPARAGTTLTLGHGAAPGN 69

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>GAG_FLV (P10262) Gag polyprotein [Contains: Core protein p15; Core protein|
           p12; Core protein p30; Core protein p10]
          Length = 580

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 129 WIKPWVVPDLPPPALTPMGR*RHPPPSAPATET 227
           W++P++ P  PP   TP+ +   P PSAP T +
Sbjct: 170 WVRPFLPPPKPP---TPLPQPLSPQPSAPLTSS 199

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>RXRB_HUMAN (P28702) Retinoic acid receptor RXR-beta (Retinoid X receptor beta)|
          Length = 533

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -3

Query: 221 SGWCRRGRMPSSSHGGEGWRW*VRHHPWLDPAAAVA 114
           +G C    +    H G   RW  R  PWLDPAAA A
Sbjct: 16  AGQCGPVGVRKEMHCGVASRW-RRRRPWLDPAAAAA 50

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>SAM68_CHICK (Q8UUW7) KH domain-containing, RNA-binding, signal|
           transduction-associated protein 1 (Src-associated in
           mitosis 68 kDa protein) (Sam68)
          Length = 433

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +2

Query: 98  GRTESAPPPPLDQAMGGAGPTTSSPHPHGKMKASAP 205
           GR  + PPPP      G GP    P P G +   AP
Sbjct: 273 GRGAAPPPPPPVPRGRGVGPPPPPPPPRGALVRGAP 308

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>AFSK_STRCO (P54741) Serine/threonine protein kinase afsK (EC 2.7.11.1)|
          Length = 799

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
 Frame = +1

Query: 82  GRTDGRTDGERATAAAGSSHGWCRT-----YHLQPSPPWEDEGIRPLLHQPLRPTPASSS 246
           GR +GR   + AT A G  HG   +      H  P PP       P  H P+ P P +  
Sbjct: 294 GRRNGRPAVKPATTAGGRGHGHGPSGARAPVHAPPLPP-------PPAHDPVVPAPPAHV 346

Query: 247 P 249
           P
Sbjct: 347 P 347

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>LITAF_BRARE (Q6GMG8) Lipopolysaccharide-induced tumor necrosis factor-alpha|
           factor homolog (LPS-induced TNF-alpha factor homolog)
          Length = 163

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 116 PPPPLDQAMGGAGP-TTSSPHPHGKMKASAP 205
           PPPP    + GA P   + P+P   MKAS P
Sbjct: 20  PPPPSYDEISGANPYYPAGPYPPADMKASGP 50

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>IFD2_CAEEL (Q19782) Intermediate filament protein ifd-2 (Intermediate filament|
           protein D2) (IF-D2) (Cel IF D2)
          Length = 443

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 104 TESAPPPPLDQAMGGAGPTTSSPHPHG 184
           T +APPPPL Q    +GP T+S H +G
Sbjct: 413 TYNAPPPPLPQ----SGPRTTSYHAYG 435

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>UCP8_SCHPO (O94685) UBA domain-containing protein 8|
          Length = 884

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +3

Query: 132 IKPWVVPDLPPPALTPMGR*RHPPPSAPATETDP 233
           IKP V P  P PA TP  +  HPPP    +   P
Sbjct: 723 IKPQVTPAPPTPAPTPAVK-HHPPPPPVRSSISP 755

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>POL2_RRVS (P36324) RNA2 polyprotein (P2) [Contains: P2A protein (2A);|
           Movement protein (2B-MP); Coat protein (2C-CP)]
          Length = 1107

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 29/87 (33%), Positives = 32/87 (36%), Gaps = 19/87 (21%)
 Frame = +1

Query: 4   SFSSGRIGGLCLSPGRQLSPAESERAGRTDGRTDGERATAAAGSSH----GWCRTYHLQ- 168
           SF   R GG+      QL  AESE A     R   ER  A A   +    G C  Y    
Sbjct: 54  SFELPRFGGVTPGVMEQLRDAESELA-EAKQRLLRERLHAVANRQNIPYLGDCMYYDAPG 112

Query: 169 --------------PSPPWEDEGIRPL 207
                         P+P WE E IRPL
Sbjct: 113 ISQEELLQAAFLEAPTPAWEHERIRPL 139

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>GAG_MSVMT (P32594) Gag polyprotein [Contains: Core protein p15; Inner coat|
           protein p12; Core shell protein p30]
          Length = 467

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 129 WIKPWVVPDLPPPALTPMGR*RHPPPSAPATETDP 233
           W+KP+V P  PPP L          PSAP+   +P
Sbjct: 95  WVKPFVHPKPPPPLL----------PSAPSLPLEP 119

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>GAG_MSVMO (P03334) Gag polyprotein R65 [Contains: Core protein p15; Inner|
           coat protein p12; Core shell protein p30; Nucleoprotein
           p10]
          Length = 537

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 129 WIKPWVVPDLPPPALTPMGR*RHPPPSAPATETDP 233
           W+KP+V P  PPP L          PSAP+   +P
Sbjct: 95  WVKPFVHPKPPPPLL----------PSAPSLPLEP 119

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>TAF6_RAT (Q63801) Transcription initiation factor TFIID subunit 6|
           (Transcription initiation factor TFIID 70 kDa subunit)
           (TAF(II)70) (TAFII-70) (TAFII-80) (TAFII80) (p80)
          Length = 678

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
 Frame = +2

Query: 2   SPSPLGGSEACACPQXXXXXXXXXXXXXXXTDGRTESAPPPPLDQAMGGAGPT-TSSPHP 178
           SPSPLGGS  C   Q                    +S PP P      G+ PT  SSP P
Sbjct: 634 SPSPLGGSALCGGKQETG-----------------DSPPPAPGTPKANGSQPTGPSSPQP 676

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>IE18_PRVIF (P11675) Immediate-early protein IE180|
          Length = 1461

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 22/66 (33%), Positives = 26/66 (39%)
 Frame = +1

Query: 7   FSSGRIGGLCLSPGRQLSPAESERAGRTDGRTDGERATAAAGSSHGWCRTYHLQPSPPWE 186
           FSS   GG        LSPA S  A R           +A+ SS     +     S   E
Sbjct: 354 FSSSSSGG----SDSDLSPARSPSAPRAPAAAAAAARRSASSSSSSSSSSSSSSSSEGEE 409

Query: 187 DEGIRP 204
           DEG+RP
Sbjct: 410 DEGVRP 415

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>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional|
           activator IE175) (Alpha-4 protein)
          Length = 1298

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 113 APPPPLDQAMGGAGPTTSSPHPHG 184
           A P P  QA  G G    +PHPHG
Sbjct: 873 AGPAPAAQAACGGGDDDDNPHPHG 896

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>PALST_EUGGR (P84739) Photoactivated adenylate cyclase alpha-subunit-like protein|
            ST-
          Length = 1019

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 18/36 (50%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = +1

Query: 178  PWEDEGIRP-LLHQPLRPTPASSS---PHRFFRRDE 273
            PW DEG RP   HQ L P P   S   PHR  R  E
Sbjct: 959  PWLDEGHRPEAPHQSLHPGPGDPSEQHPHRPNRATE 994

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>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)|
          Length = 2716

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +2

Query: 110 SAPPPPLDQAMGGAGPTTSSPHPHGKMKASAP 205
           + PPPP   A GG  P    PH HG  K   P
Sbjct: 611 ATPPPPPQGAAGGGYP--MPPHMHGGYKMGGP 640

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>KCND3_RAT (Q62897) Potassium voltage-gated channel subfamily D member 3|
           (Voltage-gated potassium channel subunit Kv4.3)
          Length = 655

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 162 PPALTPMGR*RHPPPSAPATETD 230
           PPALTP G  R PPP++P   T+
Sbjct: 620 PPALTPEGESR-PPPASPGPNTN 641

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>KCND3_RABIT (Q9TTT5) Potassium voltage-gated channel subfamily D member 3|
           (Voltage-gated potassium channel subunit Kv4.3)
          Length = 655

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 162 PPALTPMGR*RHPPPSAPATETD 230
           PPALTP G  R PPP++P   T+
Sbjct: 620 PPALTPEGETR-PPPASPGPNTN 641

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>KCND3_MOUSE (Q9Z0V1) Potassium voltage-gated channel subfamily D member 3|
           (Voltage-gated potassium channel subunit Kv4.3)
          Length = 655

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 162 PPALTPMGR*RHPPPSAPATETD 230
           PPALTP G  R PPP++P   T+
Sbjct: 620 PPALTPEGESR-PPPASPGPNTN 641

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>KCND3_HUMAN (Q9UK17) Potassium voltage-gated channel subfamily D member 3|
           (Voltage-gated potassium channel subunit Kv4.3)
          Length = 655

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 162 PPALTPMGR*RHPPPSAPATETD 230
           PPALTP G  R PPP++P   T+
Sbjct: 620 PPALTPEGESR-PPPASPGPNTN 641

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>SWR1_ASPFU (Q4WAS9) Helicase swr1 (EC 3.6.1.-)|
          Length = 1695

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = +1

Query: 4   SFSSGRIGGLCLSPGRQLSPAESERAG----RTDGRTDGERATAAAGSSHGWCRTYHLQP 171
           S ++  +G    S  R+L P+ES+  G      +G     R  A   +S    R+    P
Sbjct: 25  SLNTSALGDSPDSANRELIPSESKENGVPTDSIEGPPSKRRKLAGPDNSR---RSTPRPP 81

Query: 172 SPPWEDEGI 198
           SPPW+  G+
Sbjct: 82  SPPWKKAGV 90

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>HLX1_MOUSE (Q61670) Homeobox protein HLX1|
          Length = 476

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +1

Query: 61  PAESERAGRTDGRTDGERATAAAGSSHGWCRTYHLQPSPPWEDEGIRPLLHQ 216
           PAE ER  R+  R++GE  + ++ S      +  + PS     EG    LHQ
Sbjct: 353 PAEGEREERSPSRSEGEAESESSDS-----ESLDMAPSDTERTEGTERSLHQ 399

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>FREA_HUMAN (O43638) Forkhead-related transcription factor 10 (FREAC-10)|
           (Forkhead-like 18 protein)
          Length = 330

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 122 PPLDQAMGGAGPTTSSPHPHGKMKASAPFCTSH 220
           P L+  +  A P+ + P P G ++A  P  T H
Sbjct: 263 PGLEHLLASAAPSPAPPTPPGSLRAPLPLPTDH 295

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>ZYX_MOUSE (Q62523) Zyxin|
          Length = 564

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 113 APPPPLDQAMGGAGPTTSSPHPHGKM 190
           +PPPPL++  G   PT   P P  K+
Sbjct: 117 SPPPPLEEEGGPEAPTQLPPQPREKV 142

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>DHSA_MACFA (Q8HXW3) Succinate dehydrogenase [ubiquinone] flavoprotein subunit,|
           mitochondrial precursor (EC 1.3.5.1) (Fp) (Flavoprotein
           subunit of complex II)
          Length = 664

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = -3

Query: 80  ARSLSAGESCLPGDKHKPPIRPEEKE 3
           A +LS  ESC PGDK  PPI+P   E
Sbjct: 466 ACALSIEESCRPGDK-VPPIKPNAGE 490

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>DHSA_HUMAN (P31040) Succinate dehydrogenase [ubiquinone] flavoprotein subunit,|
           mitochondrial precursor (EC 1.3.5.1) (Fp) (Flavoprotein
           subunit of complex II)
          Length = 664

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = -3

Query: 80  ARSLSAGESCLPGDKHKPPIRPEEKE 3
           A +LS  ESC PGDK  PPI+P   E
Sbjct: 466 ACALSIEESCRPGDK-VPPIKPNAGE 490

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>GAG_MLVF5 (P26807) Gag polyprotein (Core polyprotein) [Contains: Matrix|
           protein p15; RNA-binding phosphoprotein p12; Capsid
           protein p30; Nucleocapsid protein p10]
          Length = 538

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 129 WIKPWVVPDLPPPALTPMGR*RHPPPSAPATETDP 233
           W+KP+V P  PPP L         PPSAP+   +P
Sbjct: 95  WVKPFVHPK-PPPLLL--------PPSAPSLPPEP 120

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>TAF6_HUMAN (P49848) Transcription initiation factor TFIID subunit 6|
           (Transcription initiation factor TFIID 70 kDa subunit)
           (TAF(II)70) (TAFII-70) (TAFII-80) (TAFII80)
          Length = 677

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 18/59 (30%), Positives = 21/59 (35%)
 Frame = +2

Query: 2   SPSPLGGSEACACPQXXXXXXXXXXXXXXXTDGRTESAPPPPLDQAMGGAGPTTSSPHP 178
           SPSPL GS  C   Q                    +S PP P      G+ P + SP P
Sbjct: 634 SPSPLSGSALCGGKQEAG-----------------DSPPPAPGTPKANGSQPNSGSPQP 675

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>SYL_AGRT5 (Q8UBV2) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 876

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +2

Query: 266 GMKSSTAAPSKGKAAFELKHKLVQALNKIADRDTYQIGLSELQTTVDALA 415
           G+K   A   +G AA +  HK ++A+ +  D+  +   ++ +   V+ALA
Sbjct: 699 GVKPKPATEGEGLAASKAAHKTLKAVQEDLDKLAFNKAIARIYELVNALA 748


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.135    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,019,644
Number of Sequences: 219361
Number of extensions: 1299054
Number of successful extensions: 6675
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 5448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6611
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result