ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl54c04 |
|---|---|
| Clone Library Name | barley_pub |
>RS25A_ARATH (Q9SIK2) 40S ribosomal protein S25-1| Length = 108 Score = 119 bits (298), Expect = 3e-27 Identities = 58/72 (80%), Positives = 66/72 (91%) Frame = +1 Query: 181 VNNAVLFDQATYDKLLTEVPKYKQITPSVLSERLRINGSLARRAIKDLMERGLIRMVSIH 360 VNN VLFDQ TYDKLLTE PK+K ITPS+LS+R+RINGSLARRAI++LM +GLIRMVS H Sbjct: 37 VNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAH 96 Query: 361 SSQQIFTRATNT 396 SSQQI+TRATNT Sbjct: 97 SSQQIYTRATNT 108
>RS25B_ARATH (Q9T029) 40S ribosomal protein S25-2| Length = 108 Score = 118 bits (296), Expect = 6e-27 Identities = 57/72 (79%), Positives = 67/72 (93%) Frame = +1 Query: 181 VNNAVLFDQATYDKLLTEVPKYKQITPSVLSERLRINGSLARRAIKDLMERGLIRMVSIH 360 VNN VLFDQATYDKLLTE PK+K ITPS+LS+R+RINGSLARRAI++LM +G+IRMV+ H Sbjct: 37 VNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAH 96 Query: 361 SSQQIFTRATNT 396 SSQQI+TRATNT Sbjct: 97 SSQQIYTRATNT 108
>RS25_LYCES (P46301) 40S ribosomal protein S25| Length = 108 Score = 115 bits (288), Expect = 5e-26 Identities = 57/72 (79%), Positives = 66/72 (91%) Frame = +1 Query: 181 VNNAVLFDQATYDKLLTEVPKYKQITPSVLSERLRINGSLARRAIKDLMERGLIRMVSIH 360 VNN VLFD++TYDKLL+E PKYK ITPSVLS+RLRI+GSLAR+AI+DLM RG IRMVS H Sbjct: 37 VNNMVLFDKSTYDKLLSEAPKYKLITPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAH 96 Query: 361 SSQQIFTRATNT 396 +SQQI+TRATNT Sbjct: 97 ASQQIYTRATNT 108
>RS25_BRABE (Q8ISN9) 40S ribosomal protein S25| Length = 123 Score = 96.7 bits (239), Expect = 2e-20 Identities = 47/70 (67%), Positives = 59/70 (84%) Frame = +1 Query: 181 VNNAVLFDQATYDKLLTEVPKYKQITPSVLSERLRINGSLARRAIKDLMERGLIRMVSIH 360 +NN VLFD+ATYDKL EVP YK ITPSV+SERL+I GSLAR A+K+L +G+I++VS H Sbjct: 40 LNNLVLFDKATYDKLYKEVPSYKLITPSVVSERLKIRGSLARAALKELHSKGMIKLVSKH 99 Query: 361 SSQQIFTRAT 390 S+Q I+TRAT Sbjct: 100 SAQVIYTRAT 109
>RS25_AMACR (Q94G66) 40S ribosomal protein S25| Length = 114 Score = 94.0 bits (232), Expect = 2e-19 Identities = 47/71 (66%), Positives = 57/71 (80%) Frame = +1 Query: 181 VNNAVLFDQATYDKLLTEVPKYKQITPSVLSERLRINGSLARRAIKDLMERGLIRMVSIH 360 VNN VLFD AT+DKLL+E K K +T + LSER RINGSLARRAI++L+ RG I+MV H Sbjct: 36 VNNLVLFDNATFDKLLSEAGKQKVVTAATLSERFRINGSLARRAIRELVSRGAIKMVCHH 95 Query: 361 SSQQIFTRATN 393 SS QI+TR+TN Sbjct: 96 SSLQIYTRSTN 106
>RS25_SHEEP (Q6Q311) 40S ribosomal protein S25| Length = 125 Score = 92.0 bits (227), Expect = 6e-19 Identities = 44/70 (62%), Positives = 58/70 (82%) Frame = +1 Query: 181 VNNAVLFDQATYDKLLTEVPKYKQITPSVLSERLRINGSLARRAIKDLMERGLIRMVSIH 360 +NN VLFD+ATYDKL EVP YK ITP+V+SERL+I GSLAR A+++L+ +GLI++VS H Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKH 103 Query: 361 SSQQIFTRAT 390 +Q I+TR T Sbjct: 104 RAQVIYTRNT 113
>RS25_RAT (P62853) 40S ribosomal protein S25| Length = 125 Score = 92.0 bits (227), Expect = 6e-19 Identities = 44/70 (62%), Positives = 58/70 (82%) Frame = +1 Query: 181 VNNAVLFDQATYDKLLTEVPKYKQITPSVLSERLRINGSLARRAIKDLMERGLIRMVSIH 360 +NN VLFD+ATYDKL EVP YK ITP+V+SERL+I GSLAR A+++L+ +GLI++VS H Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKH 103 Query: 361 SSQQIFTRAT 390 +Q I+TR T Sbjct: 104 RAQVIYTRNT 113
>RS25_MOUSE (P62852) 40S ribosomal protein S25| Length = 125 Score = 92.0 bits (227), Expect = 6e-19 Identities = 44/70 (62%), Positives = 58/70 (82%) Frame = +1 Query: 181 VNNAVLFDQATYDKLLTEVPKYKQITPSVLSERLRINGSLARRAIKDLMERGLIRMVSIH 360 +NN VLFD+ATYDKL EVP YK ITP+V+SERL+I GSLAR A+++L+ +GLI++VS H Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKH 103 Query: 361 SSQQIFTRAT 390 +Q I+TR T Sbjct: 104 RAQVIYTRNT 113
>RS25_HUMAN (P62851) 40S ribosomal protein S25| Length = 125 Score = 92.0 bits (227), Expect = 6e-19 Identities = 44/70 (62%), Positives = 58/70 (82%) Frame = +1 Query: 181 VNNAVLFDQATYDKLLTEVPKYKQITPSVLSERLRINGSLARRAIKDLMERGLIRMVSIH 360 +NN VLFD+ATYDKL EVP YK ITP+V+SERL+I GSLAR A+++L+ +GLI++VS H Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKH 103 Query: 361 SSQQIFTRAT 390 +Q I+TR T Sbjct: 104 RAQVIYTRNT 113
>RS25_DROME (P48588) 40S ribosomal protein S25| Length = 117 Score = 92.0 bits (227), Expect = 6e-19 Identities = 46/70 (65%), Positives = 57/70 (81%) Frame = +1 Query: 181 VNNAVLFDQATYDKLLTEVPKYKQITPSVLSERLRINGSLARRAIKDLMERGLIRMVSIH 360 +NN VLFD+ATY+KL EVP YK ITPSV+SERL+I GSLA+RA+ +L E+GLI+ V H Sbjct: 43 LNNQVLFDKATYEKLYKEVPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQH 102 Query: 361 SSQQIFTRAT 390 SQ I+TRAT Sbjct: 103 HSQVIYTRAT 112
>RS25_BRARE (Q6PBI5) 40S ribosomal protein S25| Length = 124 Score = 91.3 bits (225), Expect = 1e-18 Identities = 44/70 (62%), Positives = 58/70 (82%) Frame = +1 Query: 181 VNNAVLFDQATYDKLLTEVPKYKQITPSVLSERLRINGSLARRAIKDLMERGLIRMVSIH 360 +NN VLFD+ATYDKL EVP YK ITP+V+SERL+I GSLAR A+++L+ +GLI++VS H Sbjct: 43 LNNLVLFDKATYDKLYKEVPNYKLITPAVVSERLKIRGSLARAALQELLGKGLIKLVSKH 102 Query: 361 SSQQIFTRAT 390 +Q I+TR T Sbjct: 103 RAQVIYTRNT 112
>RS25_ICTPU (Q90YP9) 40S ribosomal protein S25| Length = 124 Score = 90.1 bits (222), Expect = 2e-18 Identities = 43/70 (61%), Positives = 57/70 (81%) Frame = +1 Query: 181 VNNAVLFDQATYDKLLTEVPKYKQITPSVLSERLRINGSLARRAIKDLMERGLIRMVSIH 360 +NN VLFD+ATYDKL EVP YK ITP+V+SERL+I GSLAR A+ +L+ +G+I++VS H Sbjct: 43 LNNLVLFDKATYDKLYKEVPNYKLITPAVVSERLKIRGSLARAALLELLSKGMIKLVSKH 102 Query: 361 SSQQIFTRAT 390 +Q I+TR T Sbjct: 103 RAQVIYTRNT 112
>RS25_SPOFR (Q962Q5) 40S ribosomal protein S25| Length = 119 Score = 89.0 bits (219), Expect = 5e-18 Identities = 43/70 (61%), Positives = 56/70 (80%) Frame = +1 Query: 181 VNNAVLFDQATYDKLLTEVPKYKQITPSVLSERLRINGSLARRAIKDLMERGLIRMVSIH 360 +NN VLFD+ TY+KL EVP+YK ITP+V+SERL++ GSLARRA+ +L E+GLI+ V H Sbjct: 43 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 102 Query: 361 SSQQIFTRAT 390 Q I+TRAT Sbjct: 103 HGQVIYTRAT 112
>RS25_CAEEL (P52821) 40S ribosomal protein S25| Length = 117 Score = 84.0 bits (206), Expect = 2e-16 Identities = 41/77 (53%), Positives = 55/77 (71%) Frame = +1 Query: 181 VNNAVLFDQATYDKLLTEVPKYKQITPSVLSERLRINGSLARRAIKDLMERGLIRMVSIH 360 +NN VLFDQATYDKL EV YK ITPSV+SERL++ SLA+ +K+L +GL++ V H Sbjct: 40 LNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKCVVHH 99 Query: 361 SSQQIFTRATNT*FIII 411 Q ++TRAT +I+ Sbjct: 100 HGQVVYTRATKEADVIV 116
>RS25_DICDI (Q03409) 40S ribosomal protein S25 (S31)| Length = 110 Score = 75.9 bits (185), Expect = 4e-14 Identities = 36/69 (52%), Positives = 52/69 (75%) Frame = +1 Query: 181 VNNAVLFDQATYDKLLTEVPKYKQITPSVLSERLRINGSLARRAIKDLMERGLIRMVSIH 360 +NNA+LFD+ TY KLL E+P K IT +V+SER++ NGSLARRAIK+L+ +GLI+ + Sbjct: 41 LNNAILFDKETYAKLLKEMPTAKVITTAVVSERMKCNGSLARRAIKELLSKGLIKQIIKG 100 Query: 361 SSQQIFTRA 387 ++T+A Sbjct: 101 HGNGVYTKA 109
>RS25_LEIIN (Q9N9V4) 40S ribosomal protein S25| Length = 120 Score = 75.5 bits (184), Expect = 6e-14 Identities = 36/68 (52%), Positives = 50/68 (73%) Frame = +1 Query: 181 VNNAVLFDQATYDKLLTEVPKYKQITPSVLSERLRINGSLARRAIKDLMERGLIRMVSIH 360 + NAV+FD+ TYDKL +EVPKYK ITPS++S+RL+I S+A +K L LIR+VS Sbjct: 36 LQNAVMFDKETYDKLRSEVPKYKLITPSIISDRLKIAVSIAAAGLKQLCREKLIRLVSCS 95 Query: 361 SSQQIFTR 384 S +++TR Sbjct: 96 SKTRVYTR 103
>RS25A_YEAST (Q3E792) 40S ribosomal protein S25-A precursor (S31) (YS23) (RP45)| Length = 108 Score = 73.9 bits (180), Expect = 2e-13 Identities = 35/68 (51%), Positives = 51/68 (75%) Frame = +1 Query: 187 NAVLFDQATYDKLLTEVPKYKQITPSVLSERLRINGSLARRAIKDLMERGLIRMVSIHSS 366 +AV+ DQ YD++L EVP Y+ ++ SVL +RL+I GSLAR A++ L + G+I+ +S HS Sbjct: 38 HAVILDQEKYDRILKEVPTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSK 97 Query: 367 QQIFTRAT 390 Q I+TRAT Sbjct: 98 QAIYTRAT 105
>RS25B_SCHPO (O74172) 40S ribosomal protein S25-B (S31-B)| Length = 88 Score = 72.4 bits (176), Expect = 5e-13 Identities = 36/67 (53%), Positives = 51/67 (76%) Frame = +1 Query: 187 NAVLFDQATYDKLLTEVPKYKQITPSVLSERLRINGSLARRAIKDLMERGLIRMVSIHSS 366 +A +FD++ D++ EVP +K I+ SVL +R++INGSLAR AI+DL ERG+I+ V HS Sbjct: 18 HATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSK 77 Query: 367 QQIFTRA 387 Q I+TRA Sbjct: 78 QAIYTRA 84
>RS25B_YEAST (P0C0T4) 40S ribosomal protein S25-B precursor (S31) (YS23) (RP45)| Length = 108 Score = 72.0 bits (175), Expect = 6e-13 Identities = 34/67 (50%), Positives = 50/67 (74%) Frame = +1 Query: 187 NAVLFDQATYDKLLTEVPKYKQITPSVLSERLRINGSLARRAIKDLMERGLIRMVSIHSS 366 +AV+ DQ YD++L EVP Y+ ++ SVL +RL+I GSLAR A++ L + G+I+ +S HS Sbjct: 38 HAVILDQEKYDRILKEVPTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSK 97 Query: 367 QQIFTRA 387 Q I+TRA Sbjct: 98 QAIYTRA 104
>RS25A_SCHPO (P79009) 40S ribosomal protein S25-A (S31-A)| Length = 89 Score = 70.9 bits (172), Expect = 1e-12 Identities = 35/66 (53%), Positives = 50/66 (75%) Frame = +1 Query: 187 NAVLFDQATYDKLLTEVPKYKQITPSVLSERLRINGSLARRAIKDLMERGLIRMVSIHSS 366 +A +FD++ D++ EVP +K I+ SVL +R++INGSLAR AI+DL ERG+I+ V HS Sbjct: 18 HATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSK 77 Query: 367 QQIFTR 384 Q I+TR Sbjct: 78 QAIYTR 83
>RS25_NEUCR (Q7SC06) 40S ribosomal protein S25| Length = 97 Score = 70.5 bits (171), Expect = 2e-12 Identities = 34/67 (50%), Positives = 49/67 (73%) Frame = +1 Query: 187 NAVLFDQATYDKLLTEVPKYKQITPSVLSERLRINGSLARRAIKDLMERGLIRMVSIHSS 366 +AV+ D++T DKL +V Y+ +T + L +RL+INGSLARR +KDL E+G I+ V HS Sbjct: 26 HAVILDKSTSDKLYKDVQSYRLVTVATLVDRLKINGSLARRCLKDLEEKGQIKQVVGHSK 85 Query: 367 QQIFTRA 387 +I+TRA Sbjct: 86 MKIYTRA 92
>RS25_CANGA (Q6FPX5) 40S ribosomal protein S25| Length = 107 Score = 69.7 bits (169), Expect = 3e-12 Identities = 32/68 (47%), Positives = 50/68 (73%) Frame = +1 Query: 187 NAVLFDQATYDKLLTEVPKYKQITPSVLSERLRINGSLARRAIKDLMERGLIRMVSIHSS 366 +AV+ DQ +D++L EVP Y+ ++ SVL +RL+I GS+AR A++ L G+I+ +S HS Sbjct: 38 HAVILDQEKFDRILKEVPTYRYVSVSVLVDRLKIGGSMARVALRHLEREGIIKPISKHSK 97 Query: 367 QQIFTRAT 390 Q I+TRA+ Sbjct: 98 QAIYTRAS 105
>RS25_ASHGO (Q75DJ1) 40S ribosomal protein S25| Length = 108 Score = 68.9 bits (167), Expect = 5e-12 Identities = 33/68 (48%), Positives = 49/68 (72%) Frame = +1 Query: 187 NAVLFDQATYDKLLTEVPKYKQITPSVLSERLRINGSLARRAIKDLMERGLIRMVSIHSS 366 +AV+ DQ D++L EVP Y+ ++ SVL +RL+I GS+AR A++ L G+I+ +S HS Sbjct: 38 HAVILDQDKLDRILKEVPTYRYVSVSVLVDRLKIGGSMARVALRHLETEGIIKPISKHSK 97 Query: 367 QQIFTRAT 390 Q I+TRAT Sbjct: 98 QAIYTRAT 105
>RS25_PYRAE (Q8ZVP1) 30S ribosomal protein S25e| Length = 110 Score = 31.2 bits (69), Expect = 1.2 Identities = 16/64 (25%), Positives = 34/64 (53%) Frame = +1 Query: 196 LFDQATYDKLLTEVPKYKQITPSVLSERLRINGSLARRAIKDLMERGLIRMVSIHSSQQI 375 + D+ + + EV + ITP ++ + I S+A + +++L ERG + +V+ +I Sbjct: 44 VLDEKVFQAIAKEVQNMRVITPYEIASKYGIKMSVAFKVLRNLKERGDLVLVAKGHRTEI 103 Query: 376 FTRA 387 + A Sbjct: 104 YVPA 107
>FTSK2_RALSO (Q8XWX9) DNA translocase ftsK 2| Length = 781 Score = 30.8 bits (68), Expect = 1.6 Identities = 16/60 (26%), Positives = 34/60 (56%) Frame = +1 Query: 214 YDKLLTEVPKYKQITPSVLSERLRINGSLARRAIKDLMERGLIRMVSIHSSQQIFTRATN 393 YD+ + V K ++ + S++ LRI + A R ++D+ + GL+ +S + +++I N Sbjct: 715 YDQAVDVVLKNRRASISLVQRHLRIGYNRAARLLEDMEKAGLVSAMSGNGNREILAPNRN 774
>RS25_AERPE (Q9Y914) 30S ribosomal protein S25e| Length = 103 Score = 30.0 bits (66), Expect = 2.8 Identities = 12/37 (32%), Positives = 25/37 (67%) Frame = +1 Query: 232 EVPKYKQITPSVLSERLRINGSLARRAIKDLMERGLI 342 EV + + +TP L++++ + S+ARR ++ L E G++ Sbjct: 41 EVARERWVTPHKLAQKMGVKVSIARRVLRILEEEGVL 77
>IE18_PRVKA (P33479) Immediate-early protein IE180| Length = 1446 Score = 30.0 bits (66), Expect = 2.8 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 3/42 (7%) Frame = -2 Query: 387 GPGEDLLAGVDR---HHPNEPPLHQVLDSPASQRAIDPESLG 271 G G AG DR HH + PL LD PA+ R +DP LG Sbjct: 243 GGGGAPSAGGDRGRHHHQHREPL---LDEPAAARRLDPRPLG 281
>FTSK_CLOTE (Q895I8) DNA translocase ftsK| Length = 743 Score = 29.3 bits (64), Expect = 4.7 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Frame = +1 Query: 181 VNNAVLFDQATYDKLLTEVPKY----KQITPSVLSERLRINGSLARRAIKDLMERGLI 342 +N ++ + D+LL E K Q + S+L +LRI + A R + + ERG+I Sbjct: 667 INTSIEINNEDRDELLEEAIKIVVDVDQASTSLLQRKLRIGYNRAARIMDQMEERGII 724
>UVRC_NOCFA (Q5YTP9) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 673 Score = 28.9 bits (63), Expect = 6.2 Identities = 21/58 (36%), Positives = 28/58 (48%) Frame = -2 Query: 411 DNDKSGVCGPGEDLLAGVDRHHPNEPPLHQVLDSPASQRAIDPESLGEDGWRDLLVLG 238 D+D++ PG D G R P L+ V+D A Q A E L E G D+ V+G Sbjct: 507 DDDETPTSRPGIDPTTGRPRKFAYPPNLY-VVDGGAPQVAAAAEVLDELGITDVAVIG 563
>FTSK_CLOAB (Q97I41) DNA translocase ftsK| Length = 765 Score = 28.9 bits (63), Expect = 6.2 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Frame = +1 Query: 181 VNNAVLFDQATYDKLLTEVPKY----KQITPSVLSERLRINGSLARRAIKDLMERGLI 342 +N+ V + D+LL E K KQ + S++ +LRI + A R + L E+G I Sbjct: 690 INSNVSKSEGDEDELLEEALKIIIETKQASTSLIQRKLRIGYNRAARIMDQLEEKGYI 747
>IRAK1_HUMAN (P51617) Interleukin-1 receptor-associated kinase 1 (EC 2.7.11.1)| (IRAK-1) Length = 712 Score = 28.5 bits (62), Expect = 8.1 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 6/55 (10%) Frame = -2 Query: 387 GPG------EDLLAGVDRHHPNEPPLHQVLDSPASQRAIDPESLGEDGWRDLLVL 241 GPG E L G +EPP Q++ +PA Q+ + +L EDG D L L Sbjct: 634 GPGSRPTAVEGLALGSSASSSSEPP--QIIINPARQKMVQKLALYEDGALDSLQL 686
>RIR1_BUCAP (Q8K9W3) Ribonucleoside-diphosphate reductase alpha subunit (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 763 Score = 28.5 bits (62), Expect = 8.1 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Frame = +1 Query: 196 LFDQATYDKLLTEVPKYKQITPSVLSERLRINGSLARRAIK--DLMERGLIRMVSIHSSQ 369 LF+Q Y + YK+ S+ +E L +N +L R+ IK L L ++ +S Sbjct: 567 LFNQTNYYLGKFPIDTYKKDIDSICNEPLHLNWNLLRKKIKKYGLRNSTLSALMPSETSS 626 Query: 370 QIFTRATN 393 QI + ATN Sbjct: 627 QI-SNATN 633
>GA2L2_MOUSE (Q5SSG4) GAS2-like protein 2 (Growth arrest-specific 2-like 2)| Length = 860 Score = 28.5 bits (62), Expect = 8.1 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 3/55 (5%) Frame = -2 Query: 351 HHPNEPPLHQVLDSPASQRAIDPESLGEDGWRD---LLVLGHLGEQLVVSGLVEE 196 HH E D + DP SLG W++ L LG EQ + L EE Sbjct: 538 HHSVEASGDHQTDIQTTSETEDPRSLGTQKWKERHTSLALGRRREQALYDNLKEE 592
>ANKS3_HUMAN (Q6ZW76) Ankyrin repeat and SAM domain-containing protein 3| Length = 656 Score = 28.5 bits (62), Expect = 8.1 Identities = 15/61 (24%), Positives = 27/61 (44%) Frame = -2 Query: 381 GEDLLAGVDRHHPNEPPLHQVLDSPASQRAIDPESLGEDGWRDLLVLGHLGEQLVVSGLV 202 GE+L +D H ++V+ +R +D GW L+ ++G +V L+ Sbjct: 30 GEELDVPLDLHTAASIGQYEVVKECVQRRELDLNKKNGGGWTPLMYASYIGHDTIVHLLL 89 Query: 201 E 199 E Sbjct: 90 E 90
>IE18_PRVIF (P11675) Immediate-early protein IE180| Length = 1461 Score = 28.5 bits (62), Expect = 8.1 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 3/42 (7%) Frame = -2 Query: 387 GPGEDLLAGVDR---HHPNEPPLHQVLDSPASQRAIDPESLG 271 G G G DR HH + PL LD PA+ R +DP LG Sbjct: 251 GGGGAPSGGGDRGRHHHQHREPL---LDEPAAARRLDPRPLG 289 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,552,301 Number of Sequences: 219361 Number of extensions: 760504 Number of successful extensions: 3036 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 2906 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3035 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
