ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl54c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KLP1_CHLRE (P46870) Kinesin-like protein KLP1 28 4.0
2RKHD1_HUMAN (Q86XN8) RING finger and KH domain-containing protein 1 28 6.8
3FUMC_XYLFA (Q9PD25) Fumarate hydratase class II (EC 4.2.1.2) (Fu... 27 8.9

>KLP1_CHLRE (P46870) Kinesin-like protein KLP1|
          Length = 776

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 96  RRTGAVIVRPAHTAAGGHPKA 158
           +RTGA + RPA  A GG+ KA
Sbjct: 736 KRTGAAVSRPATVATGGNAKA 756



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>RKHD1_HUMAN (Q86XN8) RING finger and KH domain-containing protein 1|
          Length = 485

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 299 VGSWSWRRSTGPISGSSGAAWRT 367
           VG+ SWR   GP+S   GAA+ T
Sbjct: 372 VGALSWRPPQGPVSFPGGAAFST 394



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>FUMC_XYLFA (Q9PD25) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)|
          Length = 473

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 366 VLQAAPEDPEIGPVDLLQLQEPTFLAAG 283
           VL+ A E+  + PV+L +L +PT L  G
Sbjct: 436 VLEVACEESNLNPVELARLLDPTALTEG 463


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,768,225
Number of Sequences: 219361
Number of extensions: 335867
Number of successful extensions: 1208
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
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