Clone Name | bastl54c01 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | KLP1_CHLRE (P46870) Kinesin-like protein KLP1 | 28 | 4.0 | 2 | RKHD1_HUMAN (Q86XN8) RING finger and KH domain-containing protein 1 | 28 | 6.8 | 3 | FUMC_XYLFA (Q9PD25) Fumarate hydratase class II (EC 4.2.1.2) (Fu... | 27 | 8.9 |
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>KLP1_CHLRE (P46870) Kinesin-like protein KLP1| Length = 776 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +3 Query: 96 RRTGAVIVRPAHTAAGGHPKA 158 +RTGA + RPA A GG+ KA Sbjct: 736 KRTGAAVSRPATVATGGNAKA 756
>RKHD1_HUMAN (Q86XN8) RING finger and KH domain-containing protein 1| Length = 485 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = +2 Query: 299 VGSWSWRRSTGPISGSSGAAWRT 367 VG+ SWR GP+S GAA+ T Sbjct: 372 VGALSWRPPQGPVSFPGGAAFST 394
>FUMC_XYLFA (Q9PD25) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)| Length = 473 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = -1 Query: 366 VLQAAPEDPEIGPVDLLQLQEPTFLAAG 283 VL+ A E+ + PV+L +L +PT L G Sbjct: 436 VLEVACEESNLNPVELARLLDPTALTEG 463 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.313 0.133 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,768,225 Number of Sequences: 219361 Number of extensions: 335867 Number of successful extensions: 1208 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 1133 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1206 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)