ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl54b12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_478424.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2115 Score = 139 bits (70), Expect = 7e-30 Identities = 82/86 (95%) Strand = Plus / Plus Query: 255 gaggggagcacgagcgggggcaggttcccgatactgcaggcgaaccgggacccggagtcg 314 ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct: 40 gaggggagcacgagcggggcgaggttcccgatcctgcaggcgaaccgggacccggagtcg 99 Query: 315 aactgggaggtggacgtcgccaagag 340 ||||||||||||||||| |||||||| Sbjct: 100 aactgggaggtggacgtggccaagag 125
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 139 bits (70), Expect = 7e-30 Identities = 82/86 (95%) Strand = Plus / Plus Query: 255 gaggggagcacgagcgggggcaggttcccgatactgcaggcgaaccgggacccggagtcg 314 ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct: 19885079 gaggggagcacgagcggggcgaggttcccgatcctgcaggcgaaccgggacccggagtcg 19885138 Query: 315 aactgggaggtggacgtcgccaagag 340 ||||||||||||||||| |||||||| Sbjct: 19885139 aactgggaggtggacgtggccaagag 19885164 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 ggaggacggcagcggcggcg 246 |||||||||||||||||||| Sbjct: 24462826 ggaggacggcagcggcggcg 24462807
>dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0036M16 Length = 158880 Score = 139 bits (70), Expect = 7e-30 Identities = 82/86 (95%) Strand = Plus / Plus Query: 255 gaggggagcacgagcgggggcaggttcccgatactgcaggcgaaccgggacccggagtcg 314 ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct: 49729 gaggggagcacgagcggggcgaggttcccgatcctgcaggcgaaccgggacccggagtcg 49788 Query: 315 aactgggaggtggacgtcgccaagag 340 ||||||||||||||||| |||||||| Sbjct: 49789 aactgggaggtggacgtggccaagag 49814
>dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0650C03 Length = 144337 Score = 139 bits (70), Expect = 7e-30 Identities = 82/86 (95%) Strand = Plus / Plus Query: 255 gaggggagcacgagcgggggcaggttcccgatactgcaggcgaaccgggacccggagtcg 314 ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct: 125238 gaggggagcacgagcggggcgaggttcccgatcctgcaggcgaaccgggacccggagtcg 125297 Query: 315 aactgggaggtggacgtcgccaagag 340 ||||||||||||||||| |||||||| Sbjct: 125298 aactgggaggtggacgtggccaagag 125323
>ref|NM_190949.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1086 Score = 48.1 bits (24), Expect = 0.018 Identities = 30/32 (93%) Strand = Plus / Plus Query: 229 aggacggcagcggcggcgctggcggcgagggg 260 |||| ||| ||||||||||||||||||||||| Sbjct: 14 aggagggcggcggcggcgctggcggcgagggg 45
>gb|AC136219.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0073E05, complete sequence Length = 178013 Score = 48.1 bits (24), Expect = 0.018 Identities = 30/32 (93%) Strand = Plus / Plus Query: 224 catggaggacggcagcggcggcgctggcggcg 255 ||||||||||||| ||||||||| |||||||| Sbjct: 100949 catggaggacggcggcggcggcggtggcggcg 100980
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 48.1 bits (24), Expect = 0.018 Identities = 30/32 (93%) Strand = Plus / Plus Query: 224 catggaggacggcagcggcggcgctggcggcg 255 ||||||||||||| ||||||||| |||||||| Sbjct: 18627834 catggaggacggcggcggcggcggtggcggcg 18627865 Score = 44.1 bits (22), Expect = 0.29 Identities = 28/30 (93%) Strand = Plus / Plus Query: 238 gcggcggcgctggcggcgaggggagcacga 267 |||||||||||||||||| | ||||||||| Sbjct: 28432013 gcggcggcgctggcggcgcgcggagcacga 28432042
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 48.1 bits (24), Expect = 0.018 Identities = 30/32 (93%) Strand = Plus / Plus Query: 238 gcggcggcgctggcggcgaggggagcacgagc 269 ||||||||| ||||||||||||||||||||| Sbjct: 35758367 gcggcggcggcggcggcgaggggagcacgagc 35758398 Score = 48.1 bits (24), Expect = 0.018 Identities = 30/32 (93%) Strand = Plus / Minus Query: 229 aggacggcagcggcggcgctggcggcgagggg 260 |||| ||| ||||||||||||||||||||||| Sbjct: 34012205 aggagggcggcggcggcgctggcggcgagggg 34012174 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 gcggcggcgctggcggcgag 257 |||||||||||||||||||| Sbjct: 35684927 gcggcggcgctggcggcgag 35684946 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 cggcagcggcggcgctggcg 252 |||||||||||||||||||| Sbjct: 9679072 cggcagcggcggcgctggcg 9679091
>dbj|AP003232.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0034E02 Length = 165497 Score = 48.1 bits (24), Expect = 0.018 Identities = 30/32 (93%) Strand = Plus / Minus Query: 229 aggacggcagcggcggcgctggcggcgagggg 260 |||| ||| ||||||||||||||||||||||| Sbjct: 8683 aggagggcggcggcggcgctggcggcgagggg 8652
>dbj|AP004366.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0460C04 Length = 189043 Score = 48.1 bits (24), Expect = 0.018 Identities = 30/32 (93%) Strand = Plus / Plus Query: 238 gcggcggcgctggcggcgaggggagcacgagc 269 ||||||||| ||||||||||||||||||||| Sbjct: 161704 gcggcggcggcggcggcgaggggagcacgagc 161735 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 gcggcggcgctggcggcgag 257 |||||||||||||||||||| Sbjct: 88264 gcggcggcgctggcggcgag 88283
>dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506B12 Length = 170759 Score = 48.1 bits (24), Expect = 0.018 Identities = 30/32 (93%) Strand = Plus / Plus Query: 238 gcggcggcgctggcggcgaggggagcacgagc 269 ||||||||| ||||||||||||||||||||| Sbjct: 22825 gcggcggcggcggcggcgaggggagcacgagc 22856
>dbj|AP003221.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0003D09 Length = 161970 Score = 48.1 bits (24), Expect = 0.018 Identities = 30/32 (93%) Strand = Plus / Minus Query: 229 aggacggcagcggcggcgctggcggcgagggg 260 |||| ||| ||||||||||||||||||||||| Sbjct: 143648 aggagggcggcggcggcgctggcggcgagggg 143617
>dbj|AK062285.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-D04, full insert sequence Length = 880 Score = 48.1 bits (24), Expect = 0.018 Identities = 30/32 (93%) Strand = Plus / Minus Query: 224 catggaggacggcagcggcggcgctggcggcg 255 ||||||||||||| ||||||||| |||||||| Sbjct: 35 catggaggacggcggcggcggcggtggcggcg 4
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 46.1 bits (23), Expect = 0.073 Identities = 23/23 (100%) Strand = Plus / Plus Query: 233 cggcagcggcggcgctggcggcg 255 ||||||||||||||||||||||| Sbjct: 1494434 cggcagcggcggcgctggcggcg 1494456
>emb|Z78205.1|BHT1UL Bovine herpesvirus type 1 UL22-35 genes Length = 37000 Score = 46.1 bits (23), Expect = 0.073 Identities = 23/23 (100%) Strand = Plus / Plus Query: 233 cggcagcggcggcgctggcggcg 255 ||||||||||||||||||||||| Sbjct: 23096 cggcagcggcggcgctggcggcg 23118
>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome Length = 135301 Score = 46.1 bits (23), Expect = 0.073 Identities = 23/23 (100%) Strand = Plus / Plus Query: 233 cggcagcggcggcgctggcggcg 255 ||||||||||||||||||||||| Sbjct: 53896 cggcagcggcggcgctggcggcg 53918
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 46.1 bits (23), Expect = 0.073 Identities = 26/27 (96%) Strand = Plus / Plus Query: 236 cagcggcggcgctggcggcgaggggag 262 ||||||||||| ||||||||||||||| Sbjct: 13112446 cagcggcggcggtggcggcgaggggag 13112472 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 tggaggacggcagcggcggc 245 |||||||||||||||||||| Sbjct: 12290805 tggaggacggcagcggcggc 12290786 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 gcggcggcgctggcggcgag 257 |||||||||||||||||||| Sbjct: 4970183 gcggcggcgctggcggcgag 4970164
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 46.1 bits (23), Expect = 0.073 Identities = 29/31 (93%) Strand = Plus / Minus Query: 233 cggcagcggcggcgctggcggcgaggggagc 263 |||||||||||||| ||||||||||||||| Sbjct: 2404521 cggcagcggcggcggcggcggcgaggggagc 2404491 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 agcggcggcgctggcggcgag 257 ||||||||||||||||||||| Sbjct: 17892771 agcggcggcgctggcggcgag 17892751 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 ggaggacggcagcggcggcg 246 |||||||||||||||||||| Sbjct: 8642142 ggaggacggcagcggcggcg 8642123
>dbj|AP003767.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0036F10 Length = 149415 Score = 46.1 bits (23), Expect = 0.073 Identities = 29/31 (93%) Strand = Plus / Minus Query: 233 cggcagcggcggcgctggcggcgaggggagc 263 |||||||||||||| ||||||||||||||| Sbjct: 35979 cggcagcggcggcggcggcggcgaggggagc 35949
>dbj|AP003487.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0007O20 Length = 147363 Score = 46.1 bits (23), Expect = 0.073 Identities = 29/31 (93%) Strand = Plus / Minus Query: 233 cggcagcggcggcgctggcggcgaggggagc 263 |||||||||||||| ||||||||||||||| Sbjct: 126322 cggcagcggcggcggcggcggcgaggggagc 126292
>dbj|AP005728.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0048A13 Length = 137680 Score = 46.1 bits (23), Expect = 0.073 Identities = 26/27 (96%) Strand = Plus / Plus Query: 236 cagcggcggcgctggcggcgaggggag 262 ||||||||||| ||||||||||||||| Sbjct: 34536 cagcggcggcggtggcggcgaggggag 34562
>emb|X94677.1|BHV1ULGNS Bovine herpesvirus type 1 genes for UL[27,28,29,30,31] Length = 10500 Score = 46.1 bits (23), Expect = 0.073 Identities = 23/23 (100%) Strand = Plus / Plus Query: 233 cggcagcggcggcgctggcggcg 255 ||||||||||||||||||||||| Sbjct: 8820 cggcagcggcggcgctggcggcg 8842
>gb|M23557.1|MSGPALCG Plasmid pAL5000 (from Mycobacterium fortuitum) complete genome Length = 4837 Score = 46.1 bits (23), Expect = 0.073 Identities = 23/23 (100%) Strand = Plus / Plus Query: 233 cggcagcggcggcgctggcggcg 255 ||||||||||||||||||||||| Sbjct: 2688 cggcagcggcggcgctggcggcg 2710
>gb|M60875.1|MSGORF Mycobacterium fortuitum DNA sequence, ORFs 1 and 2 Length = 4821 Score = 46.1 bits (23), Expect = 0.073 Identities = 23/23 (100%) Strand = Plus / Plus Query: 233 cggcagcggcggcgctggcggcg 255 ||||||||||||||||||||||| Sbjct: 2677 cggcagcggcggcgctggcggcg 2699
>ref|XM_475920.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 477 Score = 44.1 bits (22), Expect = 0.29 Identities = 28/30 (93%) Strand = Plus / Plus Query: 238 gcggcggcgctggcggcgaggggagcacga 267 |||||||||||||||||| | ||||||||| Sbjct: 116 gcggcggcgctggcggcgcgcggagcacga 145
>gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1268_B08, complete sequence Length = 119500 Score = 44.1 bits (22), Expect = 0.29 Identities = 28/30 (93%) Strand = Plus / Plus Query: 238 gcggcggcgctggcggcgaggggagcacga 267 |||||||||||||||||| | ||||||||| Sbjct: 66937 gcggcggcgctggcggcgcgcggagcacga 66966
>gb|BC030758.1| Homo sapiens hypothetical protein LOC128977, mRNA (cDNA clone IMAGE:4797610) Length = 1023 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 217 gcggagtcatggaggacggcagcggc 242 |||||||||||| ||||||||||||| Sbjct: 2 gcggagtcatggcggacggcagcggc 27
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 234 ggcagcggcggcgctggcggcg 255 |||||||||||||||||||||| Sbjct: 2067080 ggcagcggcggcgctggcggcg 2067101
>gb|AY104635.1| Zea mays PCO115798 mRNA sequence Length = 1324 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 230 ggacggcagcggcggcgctggcggcg 255 ||||||| |||||||||||||||||| Sbjct: 115 ggacggcggcggcggcgctggcggcg 140
>dbj|AP007294.1| Lotus japonicus genomic DNA, clone:LjT42E17, TM0355, complete sequence Length = 124602 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 234 ggcagcggcggcgctggcggcg 255 |||||||||||||||||||||| Sbjct: 50573 ggcagcggcggcgctggcggcg 50552
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 233 cggcagcggcggcgctggcgg 253 ||||||||||||||||||||| Sbjct: 3933591 cggcagcggcggcgctggcgg 3933611 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 233 cggcagcggcggcgctggcggcga 256 ||||| |||||||||||||||||| Sbjct: 3937308 cggcaacggcggcgctggcggcga 3937331
>gb|AC132681.5| Mus musculus BAC clone RP23-442K13 from chromosome 3, complete sequence Length = 190938 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 ccctttccccttcccgcttcc 122 ||||||||||||||||||||| Sbjct: 64312 ccctttccccttcccgcttcc 64332
>ref|XM_868005.1| PREDICTED: Bos taurus similar to zinc finger protein 654 (LOC616042), mRNA Length = 3279 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 231 gacggcagcggcggcgctggcggcg 255 |||||||| |||||||||||||||| Sbjct: 103 gacggcagaggcggcgctggcggcg 127
>ref|XM_987484.1| PREDICTED: Mus musculus similar to fibroblast growth factor receptor 2 (LOC671508), mRNA Length = 3579 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 238 gcggcggcgctggcggcgaggggag 262 |||||||||| |||||||||||||| Sbjct: 1039 gcggcggcgcgggcggcgaggggag 1063
>ref|XM_883448.1| Leishmania major strain Friedlin hypothetical protein (L3291.04) partial mRNA Length = 4698 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 233 cggcagcggcggcgctggcgg 253 ||||||||||||||||||||| Sbjct: 2535 cggcagcggcggcgctggcgg 2555
>emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4, right end Length = 247462 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 cggcagcggcggcgctggcgg 253 ||||||||||||||||||||| Sbjct: 9172 cggcagcggcggcgctggcgg 9152
>gb|AC157606.5| Mus musculus chromosome 7, clone RP23-466J2, complete sequence Length = 174676 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 238 gcggcggcgctggcggcgaggggag 262 |||||||||| |||||||||||||| Sbjct: 44007 gcggcggcgcgggcggcgaggggag 43983
>emb|BX842583.1| Mycobacterium tuberculosis H37Rv complete genome; segment 12/13 Length = 349606 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 233 cggcagcggcggcgctggcgg 253 ||||||||||||||||||||| Sbjct: 123169 cggcagcggcggcgctggcgg 123189 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 233 cggcagcggcggcgctggcggcga 256 ||||| |||||||||||||||||| Sbjct: 126533 cggcaacggcggcgctggcggcga 126556
>emb|BX248346.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 13/14 Length = 316050 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 233 cggcagcggcggcgctggcgg 253 ||||||||||||||||||||| Sbjct: 133582 cggcagcggcggcgctggcgg 133602 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 233 cggcagcggcggcgctggcggcga 256 ||||| |||||||||||||||||| Sbjct: 137398 cggcaacggcggcgctggcggcga 137421
>gb|AC090433.10| Chlamydomonas reinhardtii clone cr-19b23, complete sequence Length = 118183 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 231 gacggcagcggcggcgctggcggcg 255 |||||||||||||||||||| |||| Sbjct: 26990 gacggcagcggcggcgctggtggcg 27014
>dbj|AP003618.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0561B08 Length = 161083 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 agcggcggcgctggcggcgag 257 ||||||||||||||||||||| Sbjct: 97960 agcggcggcgctggcggcgag 97940
>emb|X66455.1|MMFGFR2 M.musculus promoter region of fibroblast growth factor receptor 2 gene Length = 1374 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 238 gcggcggcgctggcggcgaggggag 262 |||||||||| |||||||||||||| Sbjct: 885 gcggcggcgcgggcggcgaggggag 909
>ref|NM_188091.1| Oryza sativa (japonica cultivar-group), Ozsa8523 predicted mRNA Length = 774 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 cggcagcggcggcgctggcg 252 |||||||||||||||||||| Sbjct: 171 cggcagcggcggcgctggcg 190
>ref|XM_464882.1| Oryza sativa (japonica cultivar-group), mRNA Length = 273 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 231 gacggcagcggcggcgctggcggcgagg 258 |||||| ||||||||| ||||||||||| Sbjct: 186 gacggcggcggcggcgatggcggcgagg 213
>ref|XM_464880.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2599 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 231 gacggcagcggcggcgctggcggcgagg 258 |||||| ||||||||| ||||||||||| Sbjct: 73 gacggcggcggcggcgatggcggcgagg 46
>ref|XM_464881.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2368 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 231 gacggcagcggcggcgctggcggcgagg 258 |||||| ||||||||| ||||||||||| Sbjct: 116 gacggcggcggcggcgatggcggcgagg 89
>ref|XM_450698.1| Oryza sativa (japonica cultivar-group), mRNA Length = 681 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 tggaggacggcagcggcggc 245 |||||||||||||||||||| Sbjct: 209 tggaggacggcagcggcggc 228
>ref|XM_450369.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1785 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 gcggcggcgctggcggcgag 257 |||||||||||||||||||| Sbjct: 382 gcggcggcgctggcggcgag 401
>ref|NM_196934.1| Oryza sativa (japonica cultivar-group) putative protein kinase (OSJNBa0006L06.16), mRNA Length = 2823 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 231 gacggcagcggcggcgctggcggcgagg 258 |||||||||||||||| |||||||||| Sbjct: 2542 gacggcagcggcggcggcggcggcgagg 2569
>ref|NM_190464.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2010 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 gcggcggcgctggcggcgag 257 |||||||||||||||||||| Sbjct: 489 gcggcggcgctggcggcgag 470
>ref|XM_479045.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1162 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 ggaggacggcagcggcggcg 246 |||||||||||||||||||| Sbjct: 427 ggaggacggcagcggcggcg 446
>gb|AC108224.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0038F07, complete sequence Length = 175703 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 233 cggcagcggcggcgctggcggcgagggg 260 |||||||||||||| |||||||||||| Sbjct: 129884 cggcagcggcggcggcggcggcgagggg 129911
>gb|AC093123.4| Papio anubis clone RP41-171O6, complete sequence Length = 172369 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 232 acggcagcggcggcgctggcggcg 255 ||||| |||||||||||||||||| Sbjct: 1776 acggcggcggcggcgctggcggcg 1753
>ref|XM_994064.1| PREDICTED: Mus musculus retinitis pigmentosa 1 homolog (human)-like 1 (Rp1hl1), mRNA Length = 6759 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 cctcttccaaccctagctcc 103 |||||||||||||||||||| Sbjct: 4309 cctcttccaaccctagctcc 4290
>ref|XM_914910.2| PREDICTED: Mus musculus retinitis pigmentosa 1 homolog (human)-like 1, transcript variant 3 (Rp1hl1), mRNA Length = 6759 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 cctcttccaaccctagctcc 103 |||||||||||||||||||| Sbjct: 4309 cctcttccaaccctagctcc 4290
>ref|XM_484387.3| PREDICTED: Mus musculus retinitis pigmentosa 1 homolog (human)-like 1, transcript variant 1 (Rp1hl1), mRNA Length = 7096 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 cctcttccaaccctagctcc 103 |||||||||||||||||||| Sbjct: 4309 cctcttccaaccctagctcc 4290
>gb|AC005096.4| Homo sapiens BAC clone CTA-339C12 from 7, complete sequence Length = 185376 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 232 acggcagcggcggcgctggcggcg 255 ||||| |||||||||||||||||| Sbjct: 123893 acggcggcggcggcgctggcggcg 123870
>ref|XM_883495.1| Leishmania major strain Friedlin huntingtin-interacting protein (HIP) partial mRNA Length = 3213 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 ggcagcggcggcgctggcgg 253 |||||||||||||||||||| Sbjct: 1380 ggcagcggcggcgctggcgg 1361
>emb|AL389894.4|LMFLCHR4A Leishmania major Friedlin chromosome 4, left end Length = 225394 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 ggcagcggcggcgctggcgg 253 |||||||||||||||||||| Sbjct: 211494 ggcagcggcggcgctggcgg 211513
>gb|BC031365.1| Mus musculus retinitis pigmentosa 1 homolog (human)-like 1, mRNA (cDNA clone IMAGE:5358589), complete cds Length = 2949 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 cctcttccaaccctagctcc 103 |||||||||||||||||||| Sbjct: 447 cctcttccaaccctagctcc 428
>gb|AC166997.1| Mus musculus BAC clone RP23-107H9 from chromosome 14, complete sequence Length = 201316 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 cctcttccaaccctagctcc 103 |||||||||||||||||||| Sbjct: 171360 cctcttccaaccctagctcc 171379
>gb|AC123524.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052C03, complete sequence Length = 157178 Score = 40.1 bits (20), Expect = 4.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 233 cggcagcggcggcgctggcggcgaggggagca 264 |||| ||||||||| |||||||||||||||| Sbjct: 88875 cggcggcggcggcggcggcggcgaggggagca 88844
>emb|AL121712.27|HSJ710H13 Human DNA sequence from clone RP4-710H13 on chromosome 20 Contains the SNAI1 gene encoding the snail 1 (drosophila homolog) zinc finger protein, a putative novel gene, two CpG islands, ESTs, STSs and GSSs, complete sequence Length = 79779 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 233 cggcagcggcggcgctggcggcgagggg 260 |||||||||||||| |||||||||||| Sbjct: 47874 cggcagcggcggcggcggcggcgagggg 47901
>gb|AY168340.1| Mus musculus retinitis pigmentosa 1-like 1 protein (Rp1l1) mRNA, complete cds Length = 5580 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 cctcttccaaccctagctcc 103 |||||||||||||||||||| Sbjct: 4090 cctcttccaaccctagctcc 4071
>emb|AJ491325.1|MMU491325 Mus musculus mRNA for retinitis pigmentosa 1-like protein 1 (Rp1l1p gene) Length = 5601 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 cctcttccaaccctagctcc 103 |||||||||||||||||||| Sbjct: 4111 cctcttccaaccctagctcc 4092
>gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 genomic sequence, complete sequence Length = 162339 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 231 gacggcagcggcggcgctggcggcgagg 258 |||||||||||||||| |||||||||| Sbjct: 97086 gacggcagcggcggcggcggcggcgagg 97059
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 cagcggcggcgctggcggcg 255 |||||||||||||||||||| Sbjct: 1500663 cagcggcggcgctggcggcg 1500644
>gb|AC091776.19| Chlamydomonas reinhardtii clone cr-4i21, complete sequence Length = 48498 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 cagcggcggcgctggcggcg 255 |||||||||||||||||||| Sbjct: 23685 cagcggcggcgctggcggcg 23666
>gb|AC090435.28| Chlamydomonas reinhardtii clone cr-32m22, complete sequence Length = 79677 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 cagcggcggcgctggcggcg 255 |||||||||||||||||||| Sbjct: 2399 cagcggcggcgctggcggcg 2380
>gb|BC049924.1| Mus musculus, Similar to cDNA sequence BC031365, clone IMAGE:5358589, mRNA Length = 2957 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 cctcttccaaccctagctcc 103 |||||||||||||||||||| Sbjct: 447 cctcttccaaccctagctcc 428
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 cggcagcggcggcgctggcg 252 |||||||||||||||||||| Sbjct: 25069117 cggcagcggcggcgctggcg 25069136 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 ggaggacggcagcggcggcg 246 |||||||||||||||||||| Sbjct: 16600189 ggaggacggcagcggcggcg 16600170
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 233 cggcagcggcggcgctggcggcgagggg 260 |||||||||||||| |||||||||||| Sbjct: 19411333 cggcagcggcggcggcggcggcgagggg 19411360 Score = 40.1 bits (20), Expect = 4.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 233 cggcagcggcggcgctggcggcgaggggagca 264 |||| ||||||||| |||||||||||||||| Sbjct: 6305597 cggcggcggcggcggcggcggcgaggggagca 6305566
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 231 gacggcagcggcggcgctggcggcgagg 258 |||||||||||||||| |||||||||| Sbjct: 16752569 gacggcagcggcggcggcggcggcgagg 16752542
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 4.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 233 cggcagcggcggcgctggcggcgaggggagca 264 |||| ||||||||| |||||||||||||||| Sbjct: 27173599 cggcggcggcggcggcggcggcgaggggagca 27173630 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 231 gacggcagcggcggcgctggcggcgagg 258 |||||| ||||||||| ||||||||||| Sbjct: 8988554 gacggcggcggcggcgatggcggcgagg 8988581
>gb|AE004863.1| Pseudomonas aeruginosa PAO1, section 424 of 529 of the complete genome Length = 10535 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 ggcggcgctggcggcgaggg 259 |||||||||||||||||||| Sbjct: 4974 ggcggcgctggcggcgaggg 4955
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 cggcggcgctggcggcgagg 258 |||||||||||||||||||| Sbjct: 3061188 cggcggcgctggcggcgagg 3061207
>dbj|AP000836.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0038F12 Length = 190014 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 cggcagcggcggcgctggcg 252 |||||||||||||||||||| Sbjct: 117075 cggcagcggcggcgctggcg 117094
>dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1725_H08 Length = 155431 Score = 40.1 bits (20), Expect = 4.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 233 cggcagcggcggcgctggcggcgaggggagca 264 |||| ||||||||| |||||||||||||||| Sbjct: 70048 cggcggcggcggcggcggcggcgaggggagca 70079
>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0684A08 Length = 137841 Score = 40.1 bits (20), Expect = 4.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 233 cggcagcggcggcgctggcggcgaggggagca 264 |||| ||||||||| |||||||||||||||| Sbjct: 24270 cggcggcggcggcggcggcggcgaggggagca 24301
>dbj|AP004993.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0037N01 Length = 174085 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 ggaggacggcagcggcggcg 246 |||||||||||||||||||| Sbjct: 57124 ggaggacggcagcggcggcg 57105
>dbj|AP004630.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0031A09 Length = 162511 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 ggaggacggcagcggcggcg 246 |||||||||||||||||||| Sbjct: 116961 ggaggacggcagcggcggcg 116942
>dbj|AP005969.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1119_C03 Length = 69710 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 gcggcggcgctggcggcgag 257 |||||||||||||||||||| Sbjct: 7644 gcggcggcgctggcggcgag 7625
>dbj|AP005903.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1012G11 Length = 167168 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 gcggcggcgctggcggcgag 257 |||||||||||||||||||| Sbjct: 152715 gcggcggcgctggcggcgag 152696
>emb|AL713904.3|CNS07YQ4 Oryza sativa chromosome 12, . BAC OJ1306_H03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 121563 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 cggcagcggcggcgctggcg 252 |||||||||||||||||||| Sbjct: 62362 cggcagcggcggcgctggcg 62343
>dbj|AP004230.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ2013_G04 Length = 73667 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 ggaggacggcagcggcggcg 246 |||||||||||||||||||| Sbjct: 12636 ggaggacggcagcggcggcg 12617
>dbj|AP003840.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1634_B10 Length = 100294 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 ggaggacggcagcggcggcg 246 |||||||||||||||||||| Sbjct: 88693 ggaggacggcagcggcggcg 88674
>dbj|AP005872.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1168F12 Length = 141524 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 tggaggacggcagcggcggc 245 |||||||||||||||||||| Sbjct: 74359 tggaggacggcagcggcggc 74340
>gb|AE005040.1| Halobacterium sp. NRC-1 section 71 of 170 of the complete genome Length = 10881 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 gcggcggcgctggcggcgag 257 |||||||||||||||||||| Sbjct: 1750 gcggcggcgctggcggcgag 1769
>dbj|AP006160.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1178F07 Length = 144454 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 231 gacggcagcggcggcgctggcggcgagg 258 |||||| ||||||||| ||||||||||| Sbjct: 29000 gacggcggcggcggcgatggcggcgagg 29027
>dbj|AP005803.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0060K08 Length = 159626 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 231 gacggcagcggcggcgctggcggcgagg 258 |||||| ||||||||| ||||||||||| Sbjct: 61163 gacggcggcggcggcgatggcggcgagg 61190
>dbj|AK108165.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-H04, full insert sequence Length = 953 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 cggcagcggcggcgctggcg 252 |||||||||||||||||||| Sbjct: 269 cggcagcggcggcgctggcg 288
>emb|AJ340459.1|HSA340459 Homo sapiens genomic sequence surrounding NotI site, clone NL1-VE13R Length = 836 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 251 cggcgaggggagcacgagcgggggcagg 278 |||||||||||||| ||| ||||||||| Sbjct: 274 cggcgaggggagcaggagggggggcagg 301
>dbj|AK100409.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087H04, full insert sequence Length = 2595 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 231 gacggcagcggcggcgctggcggcgagg 258 |||||| ||||||||| ||||||||||| Sbjct: 69 gacggcggcggcggcgatggcggcgagg 42
>dbj|AK067272.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098D22, full insert sequence Length = 1162 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 ggaggacggcagcggcggcg 246 |||||||||||||||||||| Sbjct: 427 ggaggacggcagcggcggcg 446
>gb|AC127686.4| Mus musculus BAC clone RP24-188G23 from 3, complete sequence Length = 173474 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 ccaccatcccgcaagaacac 185 |||||||||||||||||||| Sbjct: 47790 ccaccatcccgcaagaacac 47771
>gb|AC161764.4| Mus musculus BAC clone RP23-193D1 from chromosome 14, complete sequence Length = 215230 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 cctcttccaaccctagctcc 103 |||||||||||||||||||| Sbjct: 20346 cctcttccaaccctagctcc 20365
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 231 gacggcagcggcggcgctggcggcgagg 258 |||||||||||||||| |||||||||| Sbjct: 16761609 gacggcagcggcggcggcggcggcgagg 16761582
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 233 cggcagcggcggcgctggcggcgagggg 260 |||||||||||||| |||||||||||| Sbjct: 19570882 cggcagcggcggcggcggcggcgagggg 19570909 Score = 40.1 bits (20), Expect = 4.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 233 cggcagcggcggcgctggcggcgaggggagca 264 |||| ||||||||| |||||||||||||||| Sbjct: 6372064 cggcggcggcggcggcggcggcgaggggagca 6372033
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 cggcagcggcggcgctggcg 252 |||||||||||||||||||| Sbjct: 24997322 cggcagcggcggcgctggcg 24997341 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 ggaggacggcagcggcggcg 246 |||||||||||||||||||| Sbjct: 16553422 ggaggacggcagcggcggcg 16553403
>emb|AL713948.4|CNS07YPR Oryza sativa chromosome 12, . BAC OJ1008_A01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 129944 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 ggaggacggcagcggcggcg 246 |||||||||||||||||||| Sbjct: 70577 ggaggacggcagcggcggcg 70596
>emb|AL928754.2|CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa0056D07 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 146686 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 cggcagcggcggcgctggcg 252 |||||||||||||||||||| Sbjct: 38051 cggcagcggcggcgctggcg 38032
>dbj|AP006130.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT36O13, TM0226, complete sequence Length = 140838 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 cagcggcggcgctggcggcg 255 |||||||||||||||||||| Sbjct: 37101 cagcggcggcgctggcggcg 37082 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,133,652 Number of Sequences: 3902068 Number of extensions: 2133652 Number of successful extensions: 59695 Number of sequences better than 10.0: 102 Number of HSP's better than 10.0 without gapping: 114 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57856 Number of HSP's gapped (non-prelim): 1839 length of query: 340 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 318 effective length of database: 17,147,199,772 effective search space: 5452809527496 effective search space used: 5452809527496 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
