ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl54b11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK120068.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 3e-53
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 184 1e-43
3dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic D... 184 1e-43
4dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic D... 184 1e-43
5ref|XM_482249.1| Oryza sativa (japonica cultivar-group), mRNA 180 2e-42
6ref|XM_450615.1| Oryza sativa (japonica cultivar-group), mRNA 157 3e-35
7ref|XM_450614.1| Oryza sativa (japonica cultivar-group), mRNA 153 4e-34
8dbj|AK068165.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 4e-34
9dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 129 6e-27
10dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic D... 129 6e-27
11ref|XM_464667.1| Oryza sativa (japonica cultivar-group), mRNA 56 7e-05
12dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 56 7e-05
13dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic D... 56 7e-05
14dbj|AK066996.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 7e-05
15ref|XM_473844.1| Oryza sativa (japonica cultivar-group), predic... 44 0.28
16emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4,... 44 0.28
17dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.28
18emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 44 0.28
19emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4,... 44 0.28
20ref|XM_468154.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.1
21gb|AC135423.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
22gb|AC121364.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
23dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
24dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
25dbj|AP004046.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
26dbj|AP004095.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
27dbj|AK069780.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
28gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 42 1.1
29gb|AC168019.4| Culex pipiens quinquefasciatus, clone Culex pipie... 42 1.1
30ref|XM_466490.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.4
31ref|NM_191023.1| Oryza sativa (japonica cultivar-group), predic... 40 4.4
32gb|AC099404.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.4
33gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.4
34gb|AC151537.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.4
35gb|AC151407.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.4
36gb|AY639147.1| Stizostedion vitreum vitreum genomic sequence 40 4.4
37emb|CT025236.2| Xenopus tropicalis finished cDNA, clone TEgg001e05 40 4.4
38gb|AC166568.2| Spironucleus vortens clone JGIBAWF-9N8, complete ... 40 4.4
39emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207... 40 4.4
40gb|AC104082.3| Homo sapiens BAC clone RP11-570L13 from 4, comple... 40 4.4
41gb|CP000249.1| Frankia sp. CcI3, complete genome 40 4.4
42dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
43dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
44dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
45gb|AY741536.1| Pennisetum glaucum TEL1 gene, partial sequence 40 4.4
46dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 4.4
47dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
48dbj|AP003511.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
49dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
50emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134... 40 4.4
51dbj|AK069742.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.4
52gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.4
53emb|AL732644.3|CNS08C9J Oryza sativa chromosome 12, . BAC OSJNBa... 40 4.4
54emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa... 40 4.4 
>dbj|AK120068.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N11, full
           insert sequence
          Length = 2975

 Score =  216 bits (109), Expect = 3e-53
 Identities = 226/265 (85%)
 Strand = Plus / Plus

                                                                       
Query: 58  cccgccgacaatggcggagtcgccggagcagttcaggggccagtcccgcctcccccgatt 117
           |||||||  ||||||||  ||||||||||||||| |||||||| | || ||||| || | 
Sbjct: 90  cccgccgcaaatggcggcctcgccggagcagttccggggccaggcgcggctcccgcggtg 149

                                                                       
Query: 118 cgccgagcccctacgctacgacctcgtcctccgccccgacctcgcggcctgcaccttctc 177
           ||||   || ||  |||||||||||  |||||||||||||||||| |||||| |||||||
Sbjct: 150 cgcctccccgctcagctacgacctccgcctccgccccgacctcgccgcctgcgccttctc 209

                                                                       
Query: 178 cggctccgcgtcggccgccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgc 237
           |||||||||  | | |||||||||||| ||||| || ||||| |||||||||||||||||
Sbjct: 210 cggctccgccgccgtcgccgtcgccgtctccgccccgacccgattcctcgtcctcaacgc 269

                                                                       
Query: 238 cgccgagctcgccgtcgaccggtcctccatccgcttccaggactgggcgccgacggaggt 297
           ||||||||||||||||||| | |||||| ||||||||||||| | || |||  | |||||
Sbjct: 270 cgccgagctcgccgtcgacggatcctccgtccgcttccaggatttggtgccttccgaggt 329

                                    
Query: 298 ggtgcagttcgaggaggatgagatc 322
           |||||||||||||||||| ||||||
Sbjct: 330 ggtgcagttcgaggaggacgagatc 354
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  184 bits (93), Expect = 1e-43
 Identities = 189/221 (85%)
 Strand = Plus / Plus

                                                                            
Query: 58       cccgccgacaatggcggagtcgccggagcagttcaggggccagtcccgcctcccccgatt 117
                |||||||  ||||||||  ||||||||||||||| |||||||| | || ||||| || | 
Sbjct: 19014664 cccgccgcaaatggcggcctcgccggagcagttccggggccaggcgcggctcccgcggtg 19014723

                                                                            
Query: 118      cgccgagcccctacgctacgacctcgtcctccgccccgacctcgcggcctgcaccttctc 177
                ||||   || ||  |||||||||||  |||||||||||||||||| |||||| |||||||
Sbjct: 19014724 cgcctccccgctcagctacgacctccgcctccgccccgacctcgccgcctgcgccttctc 19014783

                                                                            
Query: 178      cggctccgcgtcggccgccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgc 237
                |||||||||  | | |||||||||||| ||||| || ||||| |||||||||||||||||
Sbjct: 19014784 cggctccgccgccgtcgccgtcgccgtctccgccccgacccgattcctcgtcctcaacgc 19014843

                                                         
Query: 238      cgccgagctcgccgtcgaccggtcctccatccgcttccagg 278
                ||||||||||||||||||| | |||||| ||||||||||||
Sbjct: 19014844 cgccgagctcgccgtcgacggatcctccgtccgcttccagg 19014884



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                              
Query: 293      gaggtggtgcagttcgaggaggatgagatc 322
                ||||||||||||||||||||||| ||||||
Sbjct: 19015002 gaggtggtgcagttcgaggaggacgagatc 19015031
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>dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1198_B10
          Length = 119768

 Score =  184 bits (93), Expect = 1e-43
 Identities = 189/221 (85%)
 Strand = Plus / Plus

                                                                         
Query: 58    cccgccgacaatggcggagtcgccggagcagttcaggggccagtcccgcctcccccgatt 117
             |||||||  ||||||||  ||||||||||||||| |||||||| | || ||||| || | 
Sbjct: 99584 cccgccgcaaatggcggcctcgccggagcagttccggggccaggcgcggctcccgcggtg 99643

                                                                         
Query: 118   cgccgagcccctacgctacgacctcgtcctccgccccgacctcgcggcctgcaccttctc 177
             ||||   || ||  |||||||||||  |||||||||||||||||| |||||| |||||||
Sbjct: 99644 cgcctccccgctcagctacgacctccgcctccgccccgacctcgccgcctgcgccttctc 99703

                                                                         
Query: 178   cggctccgcgtcggccgccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgc 237
             |||||||||  | | |||||||||||| ||||| || ||||| |||||||||||||||||
Sbjct: 99704 cggctccgccgccgtcgccgtcgccgtctccgccccgacccgattcctcgtcctcaacgc 99763

                                                      
Query: 238   cgccgagctcgccgtcgaccggtcctccatccgcttccagg 278
             ||||||||||||||||||| | |||||| ||||||||||||
Sbjct: 99764 cgccgagctcgccgtcgacggatcctccgtccgcttccagg 99804



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                           
Query: 293   gaggtggtgcagttcgaggaggatgagatc 322
             ||||||||||||||||||||||| ||||||
Sbjct: 99922 gaggtggtgcagttcgaggaggacgagatc 99951
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>dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1051_A08
          Length = 137583

 Score =  184 bits (93), Expect = 1e-43
 Identities = 189/221 (85%)
 Strand = Plus / Plus

                                                                         
Query: 58    cccgccgacaatggcggagtcgccggagcagttcaggggccagtcccgcctcccccgatt 117
             |||||||  ||||||||  ||||||||||||||| |||||||| | || ||||| || | 
Sbjct: 39451 cccgccgcaaatggcggcctcgccggagcagttccggggccaggcgcggctcccgcggtg 39510

                                                                         
Query: 118   cgccgagcccctacgctacgacctcgtcctccgccccgacctcgcggcctgcaccttctc 177
             ||||   || ||  |||||||||||  |||||||||||||||||| |||||| |||||||
Sbjct: 39511 cgcctccccgctcagctacgacctccgcctccgccccgacctcgccgcctgcgccttctc 39570

                                                                         
Query: 178   cggctccgcgtcggccgccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgc 237
             |||||||||  | | |||||||||||| ||||| || ||||| |||||||||||||||||
Sbjct: 39571 cggctccgccgccgtcgccgtcgccgtctccgccccgacccgattcctcgtcctcaacgc 39630

                                                      
Query: 238   cgccgagctcgccgtcgaccggtcctccatccgcttccagg 278
             ||||||||||||||||||| | |||||| ||||||||||||
Sbjct: 39631 cgccgagctcgccgtcgacggatcctccgtccgcttccagg 39671



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                           
Query: 293   gaggtggtgcagttcgaggaggatgagatc 322
             ||||||||||||||||||||||| ||||||
Sbjct: 39789 gaggtggtgcagttcgaggaggacgagatc 39818
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>ref|XM_482249.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2685

 Score =  180 bits (91), Expect = 2e-42
 Identities = 181/211 (85%)
 Strand = Plus / Plus

                                                                       
Query: 68  atggcggagtcgccggagcagttcaggggccagtcccgcctcccccgattcgccgagccc 127
           |||||||  ||||||||||||||| |||||||| | || ||||| || | ||||   || 
Sbjct: 1   atggcggcctcgccggagcagttccggggccaggcgcggctcccgcggtgcgcctccccg 60

                                                                       
Query: 128 ctacgctacgacctcgtcctccgccccgacctcgcggcctgcaccttctccggctccgcg 187
           ||  |||||||||||  |||||||||||||||||| |||||| |||||||||||||||| 
Sbjct: 61  ctcagctacgacctccgcctccgccccgacctcgccgcctgcgccttctccggctccgcc 120

                                                                       
Query: 188 tcggccgccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctc 247
            | | |||||||||||| ||||| || ||||| |||||||||||||||||||||||||||
Sbjct: 121 gccgtcgccgtcgccgtctccgccccgacccgattcctcgtcctcaacgccgccgagctc 180

                                          
Query: 248 gccgtcgaccggtcctccatccgcttccagg 278
           ||||||||| | |||||| ||||||||||||
Sbjct: 181 gccgtcgacggatcctccgtccgcttccagg 211



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 293 gaggtggtgcagttcgaggaggatgagatc 322
           ||||||||||||||||||||||| ||||||
Sbjct: 248 gaggtggtgcagttcgaggaggacgagatc 277
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>ref|XM_450615.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2622

 Score =  157 bits (79), Expect = 3e-35
 Identities = 118/131 (90%)
 Strand = Plus / Plus

                                                                       
Query: 194 gccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctcgccgtc 253
           ||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 127 gccgtcgacgtctccgcgcccacccgcttcctcgtcctcaacgccgccgacctcgccgtc 186

                                                                       
Query: 254 gaccggtcctccatccgcttccaggactgggcgccgacggaggtggtgcagttcgaggag 313
           |||||  |||||||||||||||||| || ||||||| ||||||||  |  ||||||||||
Sbjct: 187 gaccgcgcctccatccgcttccagggcttggcgccggcggaggtgtcggtgttcgaggag 246

                      
Query: 314 gatgagatcct 324
           || ||||||||
Sbjct: 247 gacgagatcct 257
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>ref|XM_450614.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2984

 Score =  153 bits (77), Expect = 4e-34
 Identities = 116/129 (89%)
 Strand = Plus / Plus

                                                                       
Query: 196 cgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctcgccgtcga 255
           ||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 124 cgtcgacgtctccgcgcccacccgcttcctcgtcctcaacgccgccgacctcgccgtcga 183

                                                                       
Query: 256 ccggtcctccatccgcttccaggactgggcgccgacggaggtggtgcagttcgaggagga 315
           |||  ||||||||||||||||||  | ||||||||||||||||  || ||||||||| ||
Sbjct: 184 ccgcgcctccatccgcttccaggggttggcgccgacggaggtgtcgctgttcgaggacga 243

                    
Query: 316 tgagatcct 324
            ||||||||
Sbjct: 244 cgagatcct 252
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>dbj|AK068165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134N07, full
           insert sequence
          Length = 2985

 Score =  153 bits (77), Expect = 4e-34
 Identities = 116/129 (89%)
 Strand = Plus / Plus

                                                                       
Query: 196 cgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctcgccgtcga 255
           ||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 125 cgtcgacgtctccgcgcccacccgcttcctcgtcctcaacgccgccgacctcgccgtcga 184

                                                                       
Query: 256 ccggtcctccatccgcttccaggactgggcgccgacggaggtggtgcagttcgaggagga 315
           |||  ||||||||||||||||||  | ||||||||||||||||  || ||||||||| ||
Sbjct: 185 ccgcgcctccatccgcttccaggggttggcgccgacggaggtgtcgctgttcgaggacga 244

                    
Query: 316 tgagatcct 324
            ||||||||
Sbjct: 245 cgagatcct 253
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  129 bits (65), Expect = 6e-27
 Identities = 80/85 (94%)
 Strand = Plus / Plus

                                                                            
Query: 194      gccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctcgccgtc 253
                ||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 11799403 gccgtcgacgtctccgcgcccacccgcttcctcgtcctcaacgccgccgacctcgccgtc 11799462

                                         
Query: 254      gaccggtcctccatccgcttccagg 278
                |||||  ||||||||||||||||||
Sbjct: 11799463 gaccgcgcctccatccgcttccagg 11799487



 Score =  125 bits (63), Expect = 1e-25
 Identities = 78/83 (93%)
 Strand = Plus / Plus

                                                                            
Query: 196      cgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctcgccgtcga 255
                ||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 11790221 cgtcgacgtctccgcgcccacccgcttcctcgtcctcaacgccgccgacctcgccgtcga 11790280

                                       
Query: 256      ccggtcctccatccgcttccagg 278
                |||  ||||||||||||||||||
Sbjct: 11790281 ccgcgcctccatccgcttccagg 11790303



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                          
Query: 283      ggcgccgacggaggtggtgcagttcgaggaggatgagatcct 324
                ||||||||||||||||  || ||||||||| || ||||||||
Sbjct: 11790402 ggcgccgacggaggtgtcgctgttcgaggacgacgagatcct 11790443



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 235      cgccgccgagctcgccgtcg 254
                ||||||||||||||||||||
Sbjct: 18959982 cgccgccgagctcgccgtcg 18960001
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>dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1506_A04
          Length = 114998

 Score =  129 bits (65), Expect = 6e-27
 Identities = 80/85 (94%)
 Strand = Plus / Plus

                                                                         
Query: 194   gccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctcgccgtc 253
             ||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 42221 gccgtcgacgtctccgcgcccacccgcttcctcgtcctcaacgccgccgacctcgccgtc 42280

                                      
Query: 254   gaccggtcctccatccgcttccagg 278
             |||||  ||||||||||||||||||
Sbjct: 42281 gaccgcgcctccatccgcttccagg 42305



 Score =  125 bits (63), Expect = 1e-25
 Identities = 78/83 (93%)
 Strand = Plus / Plus

                                                                         
Query: 196   cgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctcgccgtcga 255
             ||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 33039 cgtcgacgtctccgcgcccacccgcttcctcgtcctcaacgccgccgacctcgccgtcga 33098

                                    
Query: 256   ccggtcctccatccgcttccagg 278
             |||  ||||||||||||||||||
Sbjct: 33099 ccgcgcctccatccgcttccagg 33121



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                       
Query: 283   ggcgccgacggaggtggtgcagttcgaggaggatgagatcct 324
             ||||||||||||||||  || ||||||||| || ||||||||
Sbjct: 33220 ggcgccgacggaggtgtcgctgttcgaggacgacgagatcct 33261
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>ref|XM_464667.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3020

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 209 gcgcccacccgcttcctcgtcctcaacgccgccgagctcg 248
           ||||||||| | |||||||| |||||||||||||||||||
Sbjct: 256 gcgcccaccaggttcctcgtgctcaacgccgccgagctcg 295



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 81  cggagcagttcaggggccag 100
           ||||||||||||||||||||
Sbjct: 128 cggagcagttcaggggccag 147
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                       
Query: 209     gcgcccacccgcttcctcgtcctcaacgccgccgagctcg 248
               ||||||||| | |||||||| |||||||||||||||||||
Sbjct: 6598577 gcgcccaccaggttcctcgtgctcaacgccgccgagctcg 6598616



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 183      ccgcgtcggccgccgtcgccg 203
                |||||||||||||||||||||
Sbjct: 33365600 ccgcgtcggccgccgtcgccg 33365620



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 235     cgccgccgagctcgccgtcga 255
               |||||||||||||||||||||
Sbjct: 4966777 cgccgccgagctcgccgtcga 4966757



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 139      cctcgtcctccgccccgacctcgc 162
                |||| |||||||||||||||||||
Sbjct: 22935054 cctcctcctccgccccgacctcgc 22935031



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 81      cggagcagttcaggggccag 100
               ||||||||||||||||||||
Sbjct: 6598449 cggagcagttcaggggccag 6598468
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>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0027A02
          Length = 140402

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                     
Query: 209   gcgcccacccgcttcctcgtcctcaacgccgccgagctcg 248
             ||||||||| | |||||||| |||||||||||||||||||
Sbjct: 32952 gcgcccaccaggttcctcgtgctcaacgccgccgagctcg 32991



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    cggagcagttcaggggccag 100
             ||||||||||||||||||||
Sbjct: 32824 cggagcagttcaggggccag 32843
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>dbj|AK066996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089H24, full
           insert sequence
          Length = 3020

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 209 gcgcccacccgcttcctcgtcctcaacgccgccgagctcg 248
           ||||||||| | |||||||| |||||||||||||||||||
Sbjct: 256 gcgcccaccaggttcctcgtgctcaacgccgccgagctcg 295



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 81  cggagcagttcaggggccag 100
           ||||||||||||||||||||
Sbjct: 128 cggagcagttcaggggccag 147
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>ref|XM_473844.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2910

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 235 cgccgccgagctcgccgtcgac 256
           ||||||||||||||||||||||
Sbjct: 309 cgccgccgagctcgccgtcgac 330
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>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10,
             complete sequence
          Length = 150551

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 235   cgccgccgagctcgccgtcgac 256
             ||||||||||||||||||||||
Sbjct: 50238 cgccgccgagctcgccgtcgac 50217
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 235      cgccgccgagctcgccgtcgac 256
                ||||||||||||||||||||||
Sbjct: 35300808 cgccgccgagctcgccgtcgac 35300787



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 235      cgccgccgagctcgccgtcgac 256
                ||||||||||||||||||||||
Sbjct: 30952866 cgccgccgagctcgccgtcgac 30952845
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>emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0702G05, complete
              sequence
          Length = 134586

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 235    cgccgccgagctcgccgtcgac 256
              ||||||||||||||||||||||
Sbjct: 129870 cgccgccgagctcgccgtcgac 129849
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>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24,
             complete sequence
          Length = 173770

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 235   cgccgccgagctcgccgtcgac 256
             ||||||||||||||||||||||
Sbjct: 96653 cgccgccgagctcgccgtcgac 96632
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>ref|XM_468154.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 924

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 183 ccgcgtcggccgccgtcgccg 203
           |||||||||||||||||||||
Sbjct: 151 ccgcgtcggccgccgtcgccg 131
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>gb|AC135423.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0015C02,
             complete sequence
          Length = 147407

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 162   cggcctgcaccttctccggctccgc 186
             ||||||||||||||||| |||||||
Sbjct: 26988 cggcctgcaccttctcccgctccgc 27012
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>gb|AC121364.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0052E20, complete sequence
          Length = 162434

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 162   cggcctgcaccttctccggctccgc 186
             ||||||||||||||||| |||||||
Sbjct: 68521 cggcctgcaccttctcccgctccgc 68545
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 162      cggcctgcaccttctccggctccgc 186
                ||||||||||||||||| |||||||
Sbjct: 22964508 cggcctgcaccttctcccgctccgc 22964532



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 235      cgccgccgagctcgccgtcg 254
                ||||||||||||||||||||
Sbjct: 22308796 cgccgccgagctcgccgtcg 22308815
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>dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0031B09
          Length = 132729

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 235   cgccgccgagctcgccgtcga 255
             |||||||||||||||||||||
Sbjct: 37903 cgccgccgagctcgccgtcga 37883
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>dbj|AP004046.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1145_F01
          Length = 113755

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 235    cgccgccgagctcgccgtcga 255
              |||||||||||||||||||||
Sbjct: 111516 cgccgccgagctcgccgtcga 111496
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>dbj|AP004095.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1715_H01
          Length = 138733

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 183    ccgcgtcggccgccgtcgccg 203
              |||||||||||||||||||||
Sbjct: 106350 ccgcgtcggccgccgtcgccg 106370
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>dbj|AK069780.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028F19, full
           insert sequence
          Length = 3290

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 162 cggcctgcaccttctccggctccgc 186
           ||||||||||||||||| |||||||
Sbjct: 212 cggcctgcaccttctcccgctccgc 188
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 222     tcctcgtcctcaacgccgccg 242
               |||||||||||||||||||||
Sbjct: 2668988 tcctcgtcctcaacgccgccg 2668968
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>gb|AC168019.4| Culex pipiens quinquefasciatus, clone Culex pipiens
            quinquefasciatus-3940127D9, complete sequence
          Length = 102832

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 235  cgccgccgagctcgccgtcga 255
            |||||||||||||||||||||
Sbjct: 3247 cgccgccgagctcgccgtcga 3267
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>ref|XM_466490.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1768

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 139 cctcgtcctccgccccgacctcgc 162
           |||| |||||||||||||||||||
Sbjct: 6   cctcctcctccgccccgacctcgc 29
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>ref|NM_191023.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 891

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 235 cgccgccgagctcgccgtcg 254
           ||||||||||||||||||||
Sbjct: 795 cgccgccgagctcgccgtcg 776
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>gb|AC099404.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
            OSJNBa0019D02, complete sequence
          Length = 154692

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 235  cgccgccgagctcgccgtcg 254
            ||||||||||||||||||||
Sbjct: 5244 cgccgccgagctcgccgtcg 5263
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>gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02,
             complete sequence
          Length = 131860

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   cgccgccgagctcgccgtcg 254
             ||||||||||||||||||||
Sbjct: 10431 cgccgccgagctcgccgtcg 10450
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>gb|AC151537.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0087D01, complete sequence
          Length = 83225

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   cgccgccgagctcgccgtcg 254
             ||||||||||||||||||||
Sbjct: 27684 cgccgccgagctcgccgtcg 27703
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>gb|AC151407.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0073M15,
              complete sequence
          Length = 143071

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 235    cgccgccgagctcgccgtcg 254
              ||||||||||||||||||||
Sbjct: 106583 cgccgccgagctcgccgtcg 106602
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>gb|AY639147.1| Stizostedion vitreum vitreum genomic sequence
          Length = 10284

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 236  gccgccgagctcgccgtcgaccgg 259
            ||||||||||||||||||| ||||
Sbjct: 8272 gccgccgagctcgccgtcggccgg 8249
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>emb|CT025236.2| Xenopus tropicalis finished cDNA, clone TEgg001e05
          Length = 659

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 267 tccgcttccaggactgggcg 286
           ||||||||||||||||||||
Sbjct: 402 tccgcttccaggactgggcg 421
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>gb|AC166568.2| Spironucleus vortens clone JGIBAWF-9N8, complete sequence
          Length = 38345

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 228   tcctcaacgccgccgagctcgccg 251
             |||||| |||||||||||||||||
Sbjct: 23810 tcctcaccgccgccgagctcgccg 23833
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>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome
          Length = 124321

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   cgccgccgagctcgccgtcg 254
             ||||||||||||||||||||
Sbjct: 60972 cgccgccgagctcgccgtcg 60991
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>gb|AC104082.3| Homo sapiens BAC clone RP11-570L13 from 4, complete sequence
          Length = 182770

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     aagctactgtgttcagaaaa 20
             ||||||||||||||||||||
Sbjct: 21601 aagctactgtgttcagaaaa 21620
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 189    cggccgccgtcgccgtgtccgcgc 212
              ||||||||||||||||| ||||||
Sbjct: 507228 cggccgccgtcgccgtggccgcgc 507205
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 236      gccgccgagctcgccgtcga 255
                ||||||||||||||||||||
Sbjct: 14154294 gccgccgagctcgccgtcga 14154275



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 235     cgccgccgagctcgccgtcg 254
               ||||||||||||||||||||
Sbjct: 4922019 cgccgccgagctcgccgtcg 4922038
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 81       cggagcagttcaggggccag 100
                ||||||||||||||||||||
Sbjct: 12319113 cggagcagttcaggggccag 12319094
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 235      cgccgccgagctcgccgtcg 254
                ||||||||||||||||||||
Sbjct: 34362544 cgccgccgagctcgccgtcg 34362525
to top
>gb|AY741536.1| Pennisetum glaucum TEL1 gene, partial sequence
          Length = 3162

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 235 cgccgccgagctcgccgtcg 254
           ||||||||||||||||||||
Sbjct: 305 cgccgccgagctcgccgtcg 324
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 180     gctccgcgtcggccgccgtc 199
               ||||||||||||||||||||
Sbjct: 3883160 gctccgcgtcggccgccgtc 3883179
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>dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0468B07
          Length = 169071

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   cgccgccgagctcgccgtcg 254
             ||||||||||||||||||||
Sbjct: 44888 cgccgccgagctcgccgtcg 44869
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>dbj|AP003511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0578B12
          Length = 151192

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    cggagcagttcaggggccag 100
             ||||||||||||||||||||
Sbjct: 35573 cggagcagttcaggggccag 35554
to top
>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0016G10
          Length = 143211

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 139   cctcgtcctccgccccgacctcgc 162
             |||| |||||||||||||||||||
Sbjct: 54856 cctcctcctccgccccgacctcgc 54833
to top
>emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134_A05 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 120825

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   cgccgccgagctcgccgtcg 254
             ||||||||||||||||||||
Sbjct: 16403 cgccgccgagctcgccgtcg 16384
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>dbj|AK069742.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030E07, full
           insert sequence
          Length = 1764

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 139 cctcgtcctccgccccgacctcgc 162
           |||| |||||||||||||||||||
Sbjct: 6   cctcctcctccgccccgacctcgc 29
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 236      gccgccgagctcgccgtcga 255
                ||||||||||||||||||||
Sbjct: 14108574 gccgccgagctcgccgtcga 14108555



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 235     cgccgccgagctcgccgtcg 254
               ||||||||||||||||||||
Sbjct: 4922001 cgccgccgagctcgccgtcg 4922020
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>emb|AL732644.3|CNS08C9J Oryza sativa chromosome 12, . BAC OSJNBa0016A01 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 150703

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   gccgccgagctcgccgtcga 255
             ||||||||||||||||||||
Sbjct: 80835 gccgccgagctcgccgtcga 80816
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>emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa0029N15 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 141053

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   cgccgccgagctcgccgtcg 254
             ||||||||||||||||||||
Sbjct: 37940 cgccgccgagctcgccgtcg 37921


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,149,133
Number of Sequences: 3902068
Number of extensions: 2149133
Number of successful extensions: 53747
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52209
Number of HSP's gapped (non-prelim): 1533
length of query: 332
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 310
effective length of database: 17,147,199,772
effective search space: 5315631929320
effective search space used: 5315631929320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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