ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl54b01 |
|---|---|
| Clone Library Name | barley_pub |
>XRN2_HUMAN (Q9H0D6) 5'-3' exoribonuclease 2 (EC 3.1.11.-) (DHM1-like protein)| (DHP protein) Length = 950 Score = 125 bits (313), Expect = 7e-29 Identities = 59/105 (56%), Positives = 71/105 (67%) Frame = +1 Query: 142 FYRWLAEKYPMLXXXXXXXXXXXXXXXXXXXDTSKPNPNGLEFDNLYLDMNGIIHSCFHP 321 F+RWL+ KYP + D SKPNPN +EFDNLYLDMNGIIH C HP Sbjct: 6 FFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHP 65 Query: 322 EDRASPTTFAEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAR 456 ED+ +P E+ +F+YIDRLF +VRPR+LLYMAIDGVAPRA+ Sbjct: 66 EDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAK 110
>XRN2_MOUSE (Q9DBR1) 5'-3' exoribonuclease 2 (EC 3.1.11.-) (Protein Dhm1)| Length = 951 Score = 124 bits (312), Expect = 9e-29 Identities = 59/105 (56%), Positives = 71/105 (67%) Frame = +1 Query: 142 FYRWLAEKYPMLXXXXXXXXXXXXXXXXXXXDTSKPNPNGLEFDNLYLDMNGIIHSCFHP 321 F+RWL+ KYP + D SKPNPN +EFDNLYLDMNGIIH C HP Sbjct: 6 FFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHP 65 Query: 322 EDRASPTTFAEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAR 456 ED+ +P E+ +F+YIDRLF +VRPR+LLYMAIDGVAPRA+ Sbjct: 66 EDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAK 110
>XRN2_SCHPO (P40848) 5'-3' exoribonuclease 2 (EC 3.1.11.-) (Protein dhp1)| Length = 991 Score = 107 bits (268), Expect = 1e-23 Identities = 48/74 (64%), Positives = 59/74 (79%) Frame = +1 Query: 235 DTSKPNPNGLEFDNLYLDMNGIIHSCFHPEDRASPTTFAEVFQCMFDYIDRLFVMVRPRK 414 D S PNPNG+E DNLYLDMNGI+H C HPEDR +P T E+ +F+Y DR+ MVRPR+ Sbjct: 38 DLSLPNPNGVECDNLYLDMNGIVHPCSHPEDRPAPETEDEMMVAVFEYTDRILAMVRPRQ 97 Query: 415 LLYMAIDGVAPRAR 456 LL++AIDGVAPRA+ Sbjct: 98 LLFIAIDGVAPRAK 111
>XRN2_YEAST (Q02792) 5'-3' exoribonuclease 2 (EC 3.1.11.-) (Ribonucleic acid| trafficking protein 1) (p116) Length = 1006 Score = 102 bits (255), Expect = 4e-22 Identities = 50/105 (47%), Positives = 64/105 (60%) Frame = +1 Query: 142 FYRWLAEKYPMLXXXXXXXXXXXXXXXXXXXDTSKPNPNGLEFDNLYLDMNGIIHSCFHP 321 F+RWL+ KYP + D S NPNG E DNLYLDMNGI+H C HP Sbjct: 6 FFRWLSRKYPKIISPVLEEQPQIVDGVILPLDYSASNPNG-ELDNLYLDMNGIVHPCSHP 64 Query: 322 EDRASPTTFAEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAR 456 E++ P T E+ +F+Y +R+ M RPRK+L MA+DGVAPRA+ Sbjct: 65 ENKPPPETEDEMLLAVFEYTNRVLNMARPRKVLVMAVDGVAPRAK 109
>XRN1_SCHPO (P40383) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (Exonuclease 2)| (Exonuclease II) (Exo II) (p140) Length = 1328 Score = 85.9 bits (211), Expect = 5e-17 Identities = 44/107 (41%), Positives = 61/107 (57%), Gaps = 2/107 (1%) Frame = +1 Query: 142 FYRWLAEKYPMLXXXXXXXXXXXXXXXXXXXDTSKPNPNGLEFDNLYLDMNGIIHSCFHP 321 F+RW++E+YP+ N EFDNLYLDMNGI+H+C H Sbjct: 6 FFRWMSERYPLCSQLIE-------------------NDRIPEFDNLYLDMNGILHNCTHK 46 Query: 322 EDRAS--PTTFAEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAR 456 D S P E++ +F+YI+ LF ++P+KLLYMA+DG APRA+ Sbjct: 47 NDDHSSPPLPEEEMYIAIFNYIEHLFEKIKPKKLLYMAVDGCAPRAK 93
>XRN1_HUMAN (Q8IZH2) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (Strand-exchange| protein 1 homolog) Length = 1706 Score = 82.8 bits (203), Expect = 4e-16 Identities = 43/107 (40%), Positives = 59/107 (55%), Gaps = 2/107 (1%) Frame = +1 Query: 142 FYRWLAEKYPMLXXXXXXXXXXXXXXXXXXXDTSKPNPNGLEFDNLYLDMNGIIHSCFHP 321 FYRW++E+YP L EFDNLYLDMNGIIH C HP Sbjct: 6 FYRWISERYPCLSEVVKEHQIP-------------------EFDNLYLDMNGIIHQCSHP 46 Query: 322 EDRASPTTFAE--VFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAR 456 D ++ +F +F Y++ LF +++PRK+ +MA+DGVAPRA+ Sbjct: 47 NDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAK 93
>XRN1_MOUSE (P97789) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (mXRN1)| (Strand-exchange protein 1 homolog) (Protein Dhm2) Length = 1719 Score = 82.8 bits (203), Expect = 4e-16 Identities = 43/107 (40%), Positives = 59/107 (55%), Gaps = 2/107 (1%) Frame = +1 Query: 142 FYRWLAEKYPMLXXXXXXXXXXXXXXXXXXXDTSKPNPNGLEFDNLYLDMNGIIHSCFHP 321 FYRW++E+YP L EFDNLYLDMNGIIH C HP Sbjct: 6 FYRWISERYPCLSEVVKEHQIP-------------------EFDNLYLDMNGIIHQCSHP 46 Query: 322 EDRASPTTFAE--VFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAR 456 D ++ +F +F Y++ LF +++PRK+ +MA+DGVAPRA+ Sbjct: 47 NDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAK 93
>XRN1_YEAST (P22147) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (Strand exchange| protein 1) (KAR(-)-enhancing mutation protein) (5'-3' exoribonuclease) (DNA strand transfer protein beta) (STP-beta) (p175) Length = 1528 Score = 77.8 bits (190), Expect = 1e-14 Identities = 44/107 (41%), Positives = 60/107 (56%), Gaps = 2/107 (1%) Frame = +1 Query: 142 FYRWLAEKYPMLXXXXXXXXXXXXXXXXXXXDTSKPNPNGLEFDNLYLDMNGIIHSCFH- 318 F+R+++E++PM+ T P EFDNLYLDMN I+H+C H Sbjct: 6 FFRYISERWPMILQLIEG--------------TQIP-----EFDNLYLDMNSILHNCTHG 46 Query: 319 -PEDRASPTTFAEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAR 456 +D T EVF + YID LF ++P+K+ YMAIDGVAPRA+ Sbjct: 47 NDDDVTKRLTEEEVFAKICTYIDHLFQTIKPKKIFYMAIDGVAPRAK 93 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,672,960 Number of Sequences: 219361 Number of extensions: 695078 Number of successful extensions: 1879 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1801 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1870 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
