ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl54a12 |
|---|---|
| Clone Library Name | barley_pub |
>BMP4_RABIT (O46576) Bone morphogenetic protein 4 precursor (BMP-4)| Length = 409 Score = 29.6 bits (65), Expect = 2.1 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -1 Query: 255 ARKAARLSPVPRQDDSGSKWSKNQHQILLPEIQPPPAQDFP 133 A +A L Q D G W + H+I + E+ PPA+ P Sbjct: 153 AISSAELRLFREQVDQGPDWERGFHRINIYEVMKPPAEAVP 193
>BMP4_DAMDA (Q29607) Bone morphogenetic protein 4 precursor (BMP-4)| Length = 408 Score = 29.6 bits (65), Expect = 2.1 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = -1 Query: 243 ARLSPVPRQDDSGSKWSKNQHQILLPEIQPPPAQDFP 133 A L Q D G W + H+I + E+ PPA+ P Sbjct: 156 AELRDFREQVDQGPDWERGFHRINIYEVMKPPAEAVP 192
>OMP32_COMAC (P24305) Outer membrane porin protein 32 precursor (OMP32)| Length = 351 Score = 29.3 bits (64), Expect = 2.8 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +2 Query: 74 NSSLPSKDLFSFPGFGPVLSGKSWAGG 154 + L S DLFS G GP + ++WA G Sbjct: 117 SQKLTSYDLFSATGIGPFMGFRNWAAG 143
>EMIL2_MOUSE (Q8K482) EMILIN-2 precursor (Elastin microfibril interface-located| protein 2) (Elastin microfibril interfacer 2) (Basilin) Length = 1074 Score = 29.3 bits (64), Expect = 2.8 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = -1 Query: 240 RLSPVPRQDDSGSKWSKNQHQILLPEIQPPPAQDFPDRTG 121 RL+P+P +D +G + Q + +QPPP +P RTG Sbjct: 817 RLTPLP-EDPAGPPQTGQQPVLPQRPLQPPPLPAWPGRTG 855
>CN155_HUMAN (Q5H9T9) Protein C14orf155| Length = 837 Score = 28.9 bits (63), Expect = 3.6 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = -1 Query: 165 EIQPPPAQDFPDRTGPNPGKE 103 E+QPPPA++ P P P +E Sbjct: 669 EVQPPPAEEAPSEVQPPPAEE 689 Score = 28.5 bits (62), Expect = 4.8 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -1 Query: 165 EIQPPPAQDFPDRTGPNPGKEKRS 94 E+QPPPA++ P P P +E S Sbjct: 657 EVQPPPAEEAPAEVQPPPAEEAPS 680 Score = 28.1 bits (61), Expect = 6.2 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = -1 Query: 165 EIQPPPAQDFPDRTGPNPGKE 103 E+QPPPA++ P P P +E Sbjct: 645 EVQPPPAEEAPAEVQPPPAEE 665 Score = 28.1 bits (61), Expect = 6.2 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = -1 Query: 165 EIQPPPAQDFPDRTGPNPGKE 103 E+QPPPA++ P P P +E Sbjct: 633 EVQPPPAEEAPAEVQPPPAEE 653 Score = 28.1 bits (61), Expect = 6.2 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = -1 Query: 165 EIQPPPAQDFPDRTGPNPGKE 103 E+QPPPA++ P P P +E Sbjct: 621 EVQPPPAEEAPAEVQPPPAEE 641 Score = 28.1 bits (61), Expect = 6.2 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = -1 Query: 165 EIQPPPAQDFPDRTGPNPGKE 103 E+QPPPA++ P P P +E Sbjct: 609 EVQPPPAEEAPAEVQPPPAEE 629
>ZEP2_RAT (Q00900) Human immunodeficiency virus type I enhancer-binding protein| 2 homolog (DNA-binding protein AGIE-BP1) (Angiotensinogen gene-inducible enhancer-binding protein 1) (Myc intron-binding protein 1) Length = 2437 Score = 28.9 bits (63), Expect = 3.6 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Frame = -1 Query: 258 GARKAARLSP---VPRQDDSGSKWSKNQHQILLPEIQPPPAQDFPDRTGPNPGKE 103 GA +R +P VP+ G QH I +PEI+ D P++ P KE Sbjct: 853 GAESGSRPTPSQQVPQHSYHGQPRLVRQHNIQVPEIRVTEEPDKPEKEKEAPTKE 907
>BMP4_HUMAN (P12644) Bone morphogenetic protein 4 precursor (BMP-4) (BMP-2B)| Length = 408 Score = 28.9 bits (63), Expect = 3.6 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -1 Query: 246 AARLSPVPRQDDSGSKWSKNQHQILLPEIQPPPAQDFP 133 +A L Q D G W + H+I + E+ PPA+ P Sbjct: 155 SAELRLFREQVDQGPDWERGFHRINIYEVMKPPAEVVP 192
>OXR1_MOUSE (Q4KMM3) Oxidation resistance protein 1 (Protein C7)| Length = 751 Score = 28.5 bits (62), Expect = 4.8 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%) Frame = -1 Query: 237 LSPVPRQDDSGSKWSKNQHQILLPEIQP----PPAQDFPDRTGPNPG 109 LS PRQ+ S S++ + E+Q A + PDRT NPG Sbjct: 265 LSSEPRQEKSSDASSESVQTVSQMEVQSLTATSEAANVPDRTSSNPG 311
>BMP4_RAT (Q06826) Bone morphogenetic protein 4 precursor (BMP-4) (BMP-2B)| Length = 408 Score = 28.5 bits (62), Expect = 4.8 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -1 Query: 246 AARLSPVPRQDDSGSKWSKNQHQILLPEIQPPPAQDFP 133 +A L Q D G W + H+I + E+ PPA+ P Sbjct: 156 SAELRLFREQVDQGPDWEQGFHRINIYEVMKPPAEMVP 193
>BMP4_MOUSE (P21275) Bone morphogenetic protein 4 precursor (BMP-4) (BMP-2B)| Length = 408 Score = 28.5 bits (62), Expect = 4.8 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -1 Query: 246 AARLSPVPRQDDSGSKWSKNQHQILLPEIQPPPAQDFP 133 +A L Q D G W + H+I + E+ PPA+ P Sbjct: 156 SAELRLFREQVDQGPDWEQGFHRINIYEVMKPPAEMVP 193
>SELB_MOOTH (Q46455) Selenocysteine-specific elongation factor (SelB| translation factor) Length = 634 Score = 28.1 bits (61), Expect = 6.2 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +2 Query: 38 LAATCLLHAEAKNSSLPSKDLFSFPGFGPVLSGKSWAG 151 LAA A LP +FS GFG V++G W+G Sbjct: 167 LAAVTPPRPAAGRVRLPIDRVFSVTGFGTVVTGTLWSG 204
>CHKA_HUMAN (P35790) Choline kinase alpha (EC 2.7.1.32) (CK) (CHETK-alpha)| Length = 457 Score = 28.1 bits (61), Expect = 6.2 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = -1 Query: 171 LPEIQPPPAQDFPDRTGPNPGKEKRSLLGRELFLASAW 58 LP QPPP Q D P P +R+ L + FL AW Sbjct: 67 LPLPQPPPPQPPADEQ-PEPRTRRRAYLWCKEFLPGAW 103
>VL1_BPV1 (P03103) Major capsid protein L1| Length = 495 Score = 28.1 bits (61), Expect = 6.2 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = -1 Query: 201 KWSKNQHQILLPEIQPPPAQDFPDRTGPNPGKEK 100 K S NQ+++ ++ P PDRT NP KE+ Sbjct: 60 KVSANQYRVFKIQLPDPNQFALPDRTVHNPSKER 93
>VL1_BPV2 (P06458) Major capsid protein L1| Length = 497 Score = 27.7 bits (60), Expect = 8.1 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -1 Query: 216 DDSGSKWSKNQHQILLPEIQPPPAQDFPDRTGPNPGKEK 100 D + K S NQ ++ ++ P PDRT NP KE+ Sbjct: 55 DKTVPKVSANQFRVFKIQLPDPNQFALPDRTVHNPSKER 93
>HEM2_BRAJA (P45622) Delta-aminolevulinic acid dehydratase (EC 4.2.1.24)| (Porphobilinogen synthase) (ALAD) (ALADH) Length = 353 Score = 27.7 bits (60), Expect = 8.1 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%) Frame = +2 Query: 92 KDLFSFPGFGPVLSGK-----SWAGGGWISGRRIWCWFLLHFE 205 KD F+ P F +SG+ + AG GW+ G R LL F+ Sbjct: 288 KDTFAMPTFAYQVSGEYAMIAAAAGNGWLDGDRAMMESLLAFK 330
>DBP_MOUSE (Q60925) D site-binding protein (Albumin D box-binding protein)| (Albumin D-element-binding protein) Length = 325 Score = 27.7 bits (60), Expect = 8.1 Identities = 16/47 (34%), Positives = 27/47 (57%) Frame = +2 Query: 29 QPRLAATCLLHAEAKNSSLPSKDLFSFPGFGPVLSGKSWAGGGWISG 169 +P+ A+CLL + + ++LPS + PG G +G + A G +SG Sbjct: 40 KPKEPASCLLKEKERKATLPSAPV---PGPGLETAGPADAPSGAVSG 83 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,315,915 Number of Sequences: 219361 Number of extensions: 920342 Number of successful extensions: 2879 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2775 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2878 length of database: 80,573,946 effective HSP length: 61 effective length of database: 67,192,925 effective search space used: 1612630200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
