>BMS1_HUMAN (Q14692) Ribosome biogenesis protein BMS1 homolog|
          Length = 1282

 Score = 49.3 bits (116), Expect = 4e-06
 Identities = 24/71 (33%), Positives = 42/71 (59%)
 Frame = +3

Query: 225 NPKAFAFRSATKAKRLQSRSAEIEQRRLHVPIMDRSIGEXXXXXXXXXXXXXXXKSLLIK 404
           NPKAFA +SA +  R   R+ +++ ++ H+P++DR+  E               KS LI+
Sbjct: 41  NPKAFAVQSAVRMARSFHRTQDLKTKKHHIPVVDRTPLEPPPIVVVVMGPPKVGKSTLIQ 100

Query: 405 CLVKHYTKQNL 437
           CL++++T+Q L
Sbjct: 101 CLIRNFTRQKL 111

>BMS1_SCHPO (O94653) Ribosome biogenesis protein BMS1 homolog|
          Length = 1121

 Score = 49.3 bits (116), Expect = 4e-06
 Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +3

Query: 225 NPKAFAFRSATKAKRLQSRSAEIEQRRLHVPIMDRSIGEX-XXXXXXXXXXXXXXKSLLI 401
           NPKAFA  SA +  R   R+A+I Q++LHVP++DR+  E                KS LI
Sbjct: 32  NPKAFAVASAGRMARQAMRTADISQKKLHVPMVDRTPDEAPPPVIVAVMGPPGTGKSTLI 91

Query: 402 KCLVKHYTKQNL 437
           K LV+ Y+K  +
Sbjct: 92  KSLVRRYSKYTI 103

>BMS1_YEAST (Q08965) Ribosome biogenesis protein BMS1|
          Length = 1183

 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
 Frame = +3

Query: 120 VEQPRKAHRVAKSXXXXXXXXXXXXXXXXXXXXXXNPKAFAFRSATKAKRLQSRSAEIEQ 299
           +EQ  K HR AK                       N KAFA  +  K  R   RS+++ +
Sbjct: 1   MEQSNKQHRKAKEKNTAKKKLHTQGH---------NAKAFAVAAPGKMARTMQRSSDVNE 51

Query: 300 RRLHVPIMDRS-IGEXXXXXXXXXXXXXXXKSLLIKCLVKHYTKQNL 437
           R+LHVP++DR+   +               K+ LI+ LV+  TK  L
Sbjct: 52  RKLHVPMVDRTPEDDPPPFIVAVVGPPGTGKTTLIRSLVRRMTKSTL 98

>ATRX_MOUSE (Q61687) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent|
            helicase ATRX) (X-linked nuclear protein)
            (Heterochromatin protein 2) (HP1 alpha-interacting
            protein) (HP1-BP38 protein)
          Length = 2476

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = +3

Query: 57   QKPR-EHRLRKTLLTMAPGEAGVEQPR--KAHRVAK 155
            +KPR  HRL +  LT++ GE+G E+P   K H+ AK
Sbjct: 1319 KKPRYRHRLLRHKLTLSDGESGEEKPTKPKEHKEAK 1354

>R4RL1_RAT (Q80WD0) Reticulon-4 receptor-like 1 precursor (Nogo-66 receptor|
           homolog 2) (Nogo-66 receptor-related protein 3) (NgR3)
           (Nogo receptor-like 2)
          Length = 445

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 389 LSNLRRSLDYDNKRRWFPN*AIHDWHMETALFNF 288
           L NL R L ++N+ +W  + A HD H  T LF F
Sbjct: 196 LVNLDRLLLHENQLQWVHHKAFHDLHRLTTLFLF 229

>R4RL1_MOUSE (Q8K0S5) Reticulon-4 receptor-like 1 precursor (Nogo-66 receptor|
           homolog 2) (Nogo-66 receptor-related protein 3) (NgR3)
           (Nogo receptor-like 2)
          Length = 445

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 389 LSNLRRSLDYDNKRRWFPN*AIHDWHMETALFNF 288
           L NL R L ++N+ +W  + A HD H  T LF F
Sbjct: 196 LVNLDRLLLHENQLQWVHHKAFHDLHRLTTLFLF 229

>SLAP_BACST (P35825) S-layer protein precursor (Surface layer protein)|
          Length = 1228

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +2

Query: 236 FCLPFSNKSEAATISISGN*TTPSPCANHGSLNWGTTSFCCRSPRTSAGWKVAADKVSSK 415
           F + FS + + ++ S+ G   T     N+G ++ GT +    +P+T A  KV A  V+  
Sbjct: 783 FTIQFSEELKTSSGSLVGGKVTVEKLTNNGWVDAGTGTTVSVAPKTDANGKVTAAVVTLT 842

Query: 416 AL 421
            L
Sbjct: 843 GL 844

>TNR11_HUMAN (Q9Y6Q6) Tumor necrosis factor receptor superfamily member 11A|
           precursor (Receptor activator of NF-KB) (Osteoclast
           differentiation factor receptor) (ODFR) (CD265 antigen)
          Length = 616

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 263 EAATISISGN*TTPSPCANHGSLNWGTTSFCCR 361
           +A    ++GN TTP  CA     +W     CCR
Sbjct: 96  KALVAVVAGNSTTPRRCACTAGYHWSQDCECCR 128

>NPT2B_HUMAN (O95436) Sodium-dependent phosphate transport protein 2B|
           (Sodium/phosphate cotransporter 2B) (Na(+)/Pi
           cotransporter 2B) (Sodium-phosphate transport protein
           2B) (Na(+)-dependent phosphate cotransporter 2B)
           (NaPi-2b) (Solute carrier family 34
          Length = 690

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 236 FCLPFSNKSEA-ATISISGN*TTPSPCANHGSLNW 337
           +C  F+NK++   T+  + N T+PS C   G  NW
Sbjct: 302 WCKTFTNKTQINVTVPSTANCTSPSLCWTDGIQNW 336

>PRIM_PSEAE (Q9I5W0) DNA primase (EC 2.7.7.-)|
          Length = 664

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 116 GFPRSHGEEGFAEAVLAGFLRRRRGMAAGKEESGGRG 6
           GF   H +  F +AV    L +R GM   +EE GGRG
Sbjct: 72  GFVMDHDQLEFPQAVEE--LAKRAGMDVPREERGGRG 106


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,184,494
Number of Sequences: 219361
Number of extensions: 568001
Number of successful extensions: 1617
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1615
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)