ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl54a11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK101050.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033010C12, full insert sequence Length = 4093 Score = 258 bits (130), Expect = 1e-65 Identities = 252/293 (86%), Gaps = 6/293 (2%) Strand = Plus / Plus Query: 152 caagtcgggcgcgaaggcgcggaagaagaagggcaaggg------cgccgccggcgatga 205 |||||| |||||||||||| ||||||||||||| ||||| || || |||||| || Sbjct: 131 caagtccggcgcgaaggcgaggaagaagaaggggaaggggaagggcggcggcggcgacga 190 Query: 206 tgaagggggcgagaggaagaaccccaaggcttttgccttccgttcagcaacaaaagcgaa 265 ||| || ||||||||||||||||| |||||||||||||| | ||||| |||| || || Sbjct: 191 tgacggtggcgagaggaagaacccgaaggcttttgcctttcagtcagctgcaaaggccaa 250 Query: 266 gcggctacaatctcgatcagcggaaattgaacaacgccgtctccatgtgccaatcatgga 325 ||| |||||| | ||||| || || ||||||||||| ||||| ||||||||||| ||||| Sbjct: 251 gcgtctacaagcacgatcggctgagattgaacaacgtcgtcttcatgtgccaattatgga 310 Query: 326 tcgctcaattggggaaccacctccttttgttgtcgtagtccaaggacctccgcaggttgg 385 |||||||||||| |||||||| ||||||||||| ||||| ||||| ||||| |||||||| Sbjct: 311 tcgctcaattggtgaaccaccaccttttgttgttgtagttcaagggcctcctcaggttgg 370 Query: 386 aaagtcgctgctgataaagtgtctagtaaagcactacactaaacaaaacttgt 438 ||||||||||||||||| |||||||||||||||||||| |||||||| |||| Sbjct: 371 gaagtcgctgctgataaaatgtctagtaaagcactacacgaaacaaaatttgt 423
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 125 bits (63), Expect = 1e-25 Identities = 129/151 (85%) Strand = Plus / Plus Query: 232 aggcttttgccttccgttcagcaacaaaagcgaagcggctacaatctcgatcagcggaaa 291 ||||||||||||| | ||||| |||| || ||||| |||||| | ||||| || || | Sbjct: 12271184 aggcttttgcctttcagtcagctgcaaaggccaagcgtctacaagcacgatcggctgaga 12271243 Query: 292 ttgaacaacgccgtctccatgtgccaatcatggatcgctcaattggggaaccacctcctt 351 |||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| |||| Sbjct: 12271244 ttgaacaacgtcgtcttcatgtgccaattatggatcgctcaattggtgaaccaccacctt 12271303 Query: 352 ttgttgtcgtagtccaaggacctccgcaggt 382 ||||||| ||||| ||||| ||||| ||||| Sbjct: 12271304 ttgttgttgtagttcaagggcctcctcaggt 12271334 Score = 89.7 bits (45), Expect = 7e-15 Identities = 57/61 (93%) Strand = Plus / Plus Query: 378 caggttggaaagtcgctgctgataaagtgtctagtaaagcactacactaaacaaaacttg 437 |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct: 12271397 caggttgggaagtcgctgctgataaaatgtctagtaaagcactacacgaaacaaaatttg 12271456 Query: 438 t 438 | Sbjct: 12271457 t 12271457 Score = 60.0 bits (30), Expect = 6e-06 Identities = 74/89 (83%), Gaps = 6/89 (6%) Strand = Plus / Plus Query: 152 caagtcgggcgcgaaggcgcggaagaagaagggcaaggg------cgccgccggcgatga 205 |||||| |||||||||||| ||||||||||||| ||||| || || |||||| || Sbjct: 12270332 caagtccggcgcgaaggcgaggaagaagaaggggaaggggaagggcggcggcggcgacga 12270391 Query: 206 tgaagggggcgagaggaagaaccccaagg 234 ||| || ||||||||||||||||| |||| Sbjct: 12270392 tgacggtggcgagaggaagaacccgaagg 12270420 Score = 46.1 bits (23), Expect = 0.095 Identities = 23/23 (100%) Strand = Plus / Plus Query: 155 gtcgggcgcgaaggcgcggaaga 177 ||||||||||||||||||||||| Sbjct: 35125133 gtcgggcgcgaaggcgcggaaga 35125155
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 125 bits (63), Expect = 1e-25 Identities = 129/151 (85%) Strand = Plus / Plus Query: 232 aggcttttgccttccgttcagcaacaaaagcgaagcggctacaatctcgatcagcggaaa 291 ||||||||||||| | ||||| |||| || ||||| |||||| | ||||| || || | Sbjct: 12267947 aggcttttgcctttcagtcagctgcaaaggccaagcgtctacaagcacgatcggctgaga 12268006 Query: 292 ttgaacaacgccgtctccatgtgccaatcatggatcgctcaattggggaaccacctcctt 351 |||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| |||| Sbjct: 12268007 ttgaacaacgtcgtcttcatgtgccaattatggatcgctcaattggtgaaccaccacctt 12268066 Query: 352 ttgttgtcgtagtccaaggacctccgcaggt 382 ||||||| ||||| ||||| ||||| ||||| Sbjct: 12268067 ttgttgttgtagttcaagggcctcctcaggt 12268097 Score = 89.7 bits (45), Expect = 7e-15 Identities = 57/61 (93%) Strand = Plus / Plus Query: 378 caggttggaaagtcgctgctgataaagtgtctagtaaagcactacactaaacaaaacttg 437 |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct: 12268160 caggttgggaagtcgctgctgataaaatgtctagtaaagcactacacgaaacaaaatttg 12268219 Query: 438 t 438 | Sbjct: 12268220 t 12268220 Score = 60.0 bits (30), Expect = 6e-06 Identities = 74/89 (83%), Gaps = 6/89 (6%) Strand = Plus / Plus Query: 152 caagtcgggcgcgaaggcgcggaagaagaagggcaaggg------cgccgccggcgatga 205 |||||| |||||||||||| ||||||||||||| ||||| || || |||||| || Sbjct: 12267095 caagtccggcgcgaaggcgaggaagaagaaggggaaggggaagggcggcggcggcgacga 12267154 Query: 206 tgaagggggcgagaggaagaaccccaagg 234 ||| || ||||||||||||||||| |||| Sbjct: 12267155 tgacggtggcgagaggaagaacccgaagg 12267183 Score = 46.1 bits (23), Expect = 0.095 Identities = 23/23 (100%) Strand = Plus / Plus Query: 155 gtcgggcgcgaaggcgcggaaga 177 ||||||||||||||||||||||| Sbjct: 35215205 gtcgggcgcgaaggcgcggaaga 35215227
>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0029K10, from chromosome 3, complete sequence Length = 135940 Score = 125 bits (63), Expect = 1e-25 Identities = 129/151 (85%) Strand = Plus / Plus Query: 232 aggcttttgccttccgttcagcaacaaaagcgaagcggctacaatctcgatcagcggaaa 291 ||||||||||||| | ||||| |||| || ||||| |||||| | ||||| || || | Sbjct: 40717 aggcttttgcctttcagtcagctgcaaaggccaagcgtctacaagcacgatcggctgaga 40776 Query: 292 ttgaacaacgccgtctccatgtgccaatcatggatcgctcaattggggaaccacctcctt 351 |||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| |||| Sbjct: 40777 ttgaacaacgtcgtcttcatgtgccaattatggatcgctcaattggtgaaccaccacctt 40836 Query: 352 ttgttgtcgtagtccaaggacctccgcaggt 382 ||||||| ||||| ||||| ||||| ||||| Sbjct: 40837 ttgttgttgtagttcaagggcctcctcaggt 40867 Score = 89.7 bits (45), Expect = 7e-15 Identities = 57/61 (93%) Strand = Plus / Plus Query: 378 caggttggaaagtcgctgctgataaagtgtctagtaaagcactacactaaacaaaacttg 437 |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct: 40930 caggttgggaagtcgctgctgataaaatgtctagtaaagcactacacgaaacaaaatttg 40989 Query: 438 t 438 | Sbjct: 40990 t 40990 Score = 60.0 bits (30), Expect = 6e-06 Identities = 74/89 (83%), Gaps = 6/89 (6%) Strand = Plus / Plus Query: 152 caagtcgggcgcgaaggcgcggaagaagaagggcaaggg------cgccgccggcgatga 205 |||||| |||||||||||| ||||||||||||| ||||| || || |||||| || Sbjct: 39865 caagtccggcgcgaaggcgaggaagaagaaggggaaggggaagggcggcggcggcgacga 39924 Query: 206 tgaagggggcgagaggaagaaccccaagg 234 ||| || ||||||||||||||||| |||| Sbjct: 39925 tgacggtggcgagaggaagaacccgaagg 39953
>gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete sequence Length = 130272 Score = 46.1 bits (23), Expect = 0.095 Identities = 23/23 (100%) Strand = Plus / Plus Query: 155 gtcgggcgcgaaggcgcggaaga 177 ||||||||||||||||||||||| Sbjct: 126034 gtcgggcgcgaaggcgcggaaga 126056
>gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genomic sequence, complete sequence Length = 156606 Score = 46.1 bits (23), Expect = 0.095 Identities = 23/23 (100%) Strand = Plus / Plus Query: 155 gtcgggcgcgaaggcgcggaaga 177 ||||||||||||||||||||||| Sbjct: 3894 gtcgggcgcgaaggcgcggaaga 3916
>ref|XM_757278.1| Ustilago maydis 521 hypothetical protein (UM06224.1) partial mRNA Length = 3678 Score = 46.1 bits (23), Expect = 0.095 Identities = 23/23 (100%) Strand = Plus / Plus Query: 173 gaagaagaagggcaagggcgccg 195 ||||||||||||||||||||||| Sbjct: 849 gaagaagaagggcaagggcgccg 871
>dbj|AK107425.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-127-F11, full insert sequence Length = 1453 Score = 46.1 bits (23), Expect = 0.095 Identities = 23/23 (100%) Strand = Plus / Minus Query: 155 gtcgggcgcgaaggcgcggaaga 177 ||||||||||||||||||||||| Sbjct: 1080 gtcgggcgcgaaggcgcggaaga 1058
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 46.1 bits (23), Expect = 0.095 Identities = 23/23 (100%) Strand = Plus / Plus Query: 189 ggcgccgccggcgatgatgaagg 211 ||||||||||||||||||||||| Sbjct: 859519 ggcgccgccggcgatgatgaagg 859541
>ref|XM_959325.1| Neurospora crassa OR74A hypothetical protein (NCU03265.1) partial mRNA Length = 1335 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 384 ggaaagtcgctgctgataaagt 405 |||||||||||||||||||||| Sbjct: 1235 ggaaagtcgctgctgataaagt 1256
>ref|XM_330700.1| Neurospora crassa OR74A hypothetical protein (NCU03265.1) partial mRNA Length = 1335 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 384 ggaaagtcgctgctgataaagt 405 |||||||||||||||||||||| Sbjct: 1235 ggaaagtcgctgctgataaagt 1256
>ref|XM_471722.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 978 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 gggggaagccggcgtcgagca 127 ||||||||||||||||||||| Sbjct: 143 gggggaagccggcgtcgagca 163
>gb|AC107085.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1764_D01, complete sequence Length = 164709 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 agaagggcaagggcgccgccg 198 ||||||||||||||||||||| Sbjct: 153818 agaagggcaagggcgccgccg 153838
>gb|AC133291.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0542B04, complete sequence Length = 182823 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 gggggaagccggcgtcgagca 127 ||||||||||||||||||||| Sbjct: 94078 gggggaagccggcgtcgagca 94098
>ref|XM_322859.1| Neurospora crassa OR74A predicted protein (NCU10002.1) partial mRNA Length = 3162 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 166 aggcgcggaagaagaagggca 186 ||||||||||||||||||||| Sbjct: 287 aggcgcggaagaagaagggca 307
>ref|XM_953024.1| Neurospora crassa OR74A hypothetical protein (NCU10002.1) partial mRNA Length = 3162 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 166 aggcgcggaagaagaagggca 186 ||||||||||||||||||||| Sbjct: 287 aggcgcggaagaagaagggca 307
>gb|DQ157223.1| Schistosoma spindale mitochondrion, complete genome Length = 16901 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 418 actacactaaacaaaacttgt 438 ||||||||||||||||||||| Sbjct: 11163 actacactaaacaaaacttgt 11143
>gb|AC124497.3| Mus musculus BAC clone RP23-480E8 from chromosome 5, complete sequence Length = 206926 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 ccctccactctcctcctttcc 32 ||||||||||||||||||||| Sbjct: 205117 ccctccactctcctcctttcc 205097
>gb|AE005849.1| Caulobacter crescentus CB15 section 175 of 359 of the complete genome Length = 14878 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 109 gggaagccggcgtcgagcagc 129 ||||||||||||||||||||| Sbjct: 2561 gggaagccggcgtcgagcagc 2581
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 190 gcgccgccggcgatgatgaag 210 ||||||||||||||||||||| Sbjct: 2812276 gcgccgccggcgatgatgaag 2812296
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 gaagccggcgtcgagcagccg 131 ||||||||||||||||||||| Sbjct: 3423711 gaagccggcgtcgagcagccg 3423731
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 gggggaagccggcgtcgagca 127 ||||||||||||||||||||| Sbjct: 13743186 gggggaagccggcgtcgagca 13743166
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 gggggaagccggcgtcgagca 127 ||||||||||||||||||||| Sbjct: 20249482 gggggaagccggcgtcgagca 20249502
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 agaagggcaagggcgccgccg 198 ||||||||||||||||||||| Sbjct: 18986440 agaagggcaagggcgccgccg 18986460
>gb|AE004753.1| Pseudomonas aeruginosa PAO1, section 314 of 529 of the complete genome Length = 16268 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 gggggaagccggcgtcgagca 127 ||||||||||||||||||||| Sbjct: 6270 gggggaagccggcgtcgagca 6250
>dbj|AK100039.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151D13, full insert sequence Length = 1612 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 agaagggcaagggcgccgccg 198 ||||||||||||||||||||| Sbjct: 191 agaagggcaagggcgccgccg 211
>dbj|AK099875.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111H01, full insert sequence Length = 1533 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 agaagggcaagggcgccgccg 198 ||||||||||||||||||||| Sbjct: 214 agaagggcaagggcgccgccg 234
>gb|AC123827.4| Mus musculus BAC clone RP24-100N12 from 5, complete sequence Length = 185363 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 ccctccactctcctcctttcc 32 ||||||||||||||||||||| Sbjct: 9553 ccctccactctcctcctttcc 9533
>dbj|AK061132.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-A07, full insert sequence Length = 1423 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 gggggaagccggcgtcgagca 127 ||||||||||||||||||||| Sbjct: 439 gggggaagccggcgtcgagca 459
>dbj|AK059594.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-D08, full insert sequence Length = 1442 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 agaagggcaagggcgccgccg 198 ||||||||||||||||||||| Sbjct: 256 agaagggcaagggcgccgccg 276
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 gggggaagccggcgtcgagca 127 ||||||||||||||||||||| Sbjct: 20559805 gggggaagccggcgtcgagca 20559825
>emb|AL731609.2|OSJN00259 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079M09, complete sequence Length = 187359 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 gggggaagccggcgtcgagca 127 ||||||||||||||||||||| Sbjct: 137794 gggggaagccggcgtcgagca 137774
>gb|AY619724.1| Antheraea pernyi nucleopolyhedrovirus p87, HE65, and PNK\PNL genes, complete cds; and unknown genes Length = 7406 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 cgttcagcaacaaaagcgaagcgg 269 ||||||||||| |||||||||||| Sbjct: 446 cgttcagcaacgaaagcgaagcgg 469
>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness locus region Length = 160897 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 166 aggcgcggaagaagaagggcaagg 189 ||||||||||||||||||| |||| Sbjct: 124755 aggcgcggaagaagaaggggaagg 124778
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 tcctttccggcggccatccc 44 |||||||||||||||||||| Sbjct: 1763328 tcctttccggcggccatccc 1763347
>gb|AC162171.7| Mus musculus chromosome 5, clone RP23-143N11, complete sequence Length = 229553 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 aaagcactacactaaacaaa 432 |||||||||||||||||||| Sbjct: 63684 aaagcactacactaaacaaa 63665
>gb|CP000147.1| Rhodobacter sphaeroides 2.4.1 plasmid D, complete sequence Length = 100828 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 107 gggggaagccggcgtcgagcagcc 130 |||||| ||||||||||||||||| Sbjct: 51523 gggggatgccggcgtcgagcagcc 51500
>gb|DQ486030.1| Antheraea pernyi nucleopolyhedrovirus, complete genome Length = 126479 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 246 cgttcagcaacaaaagcgaagcgg 269 ||||||||||| |||||||||||| Sbjct: 48684 cgttcagcaacgaaagcgaagcgg 48661
>ref|XM_323700.1| Neurospora crassa OR74A hypothetical protein (NCU04348.1) partial mRNA Length = 3483 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 222 aagaaccccaaggcttttgccttc 245 |||||||||||||| ||||||||| Sbjct: 82 aagaaccccaaggcctttgccttc 105
>ref|XM_951236.1| Neurospora crassa OR74A hypothetical protein (NCU04348.1) partial mRNA Length = 3483 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 222 aagaaccccaaggcttttgccttc 245 |||||||||||||| ||||||||| Sbjct: 82 aagaaccccaaggcctttgccttc 105
>gb|AC171266.22| Medicago truncatula clone mth2-14o4, complete sequence Length = 137052 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 173 gaagaagaagggcaagggcgccgc 196 |||||||||||||||||| ||||| Sbjct: 56134 gaagaagaagggcaagggtgccgc 56157
>ref|XM_382969.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG02793.1) partial mRNA Length = 3420 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 gaagaagaagggcaagggcg 192 |||||||||||||||||||| Sbjct: 1596 gaagaagaagggcaagggcg 1615
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 147 gtggccaagtcgggcgcgaaggcg 170 |||||||||||||| ||||||||| Sbjct: 231552 gtggccaagtcgggggcgaaggcg 231575
>emb|AL162754.2|NMA3Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment 3/7 Length = 311321 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aaaaaccctcgccctccact 20 |||||||||||||||||||| Sbjct: 91649 aaaaaccctcgccctccact 91630
>gb|DQ428095.1| Sorghum bicolor voucher PI585454 locus PRC0162 genomic sequence Length = 797 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 aagaagggcaagggcgccgc 196 |||||||||||||||||||| Sbjct: 628 aagaagggcaagggcgccgc 647
>gb|DQ428094.1| Sorghum bicolor voucher PI267539 locus PRC0162 genomic sequence Length = 797 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 aagaagggcaagggcgccgc 196 |||||||||||||||||||| Sbjct: 628 aagaagggcaagggcgccgc 647
>gb|DQ428093.1| Sorghum bicolor voucher PI267408 locus PRC0162 genomic sequence Length = 797 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 aagaagggcaagggcgccgc 196 |||||||||||||||||||| Sbjct: 628 aagaagggcaagggcgccgc 647
>gb|DQ428092.1| Sorghum bicolor voucher PI152702 locus PRC0162 genomic sequence Length = 797 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 aagaagggcaagggcgccgc 196 |||||||||||||||||||| Sbjct: 628 aagaagggcaagggcgccgc 647
>gb|DQ428091.1| Sorghum bicolor voucher NSL92371 locus PRC0162 genomic sequence Length = 797 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 aagaagggcaagggcgccgc 196 |||||||||||||||||||| Sbjct: 628 aagaagggcaagggcgccgc 647
>gb|DQ428090.1| Sorghum bicolor voucher NSL87666 locus PRC0162 genomic sequence Length = 797 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 aagaagggcaagggcgccgc 196 |||||||||||||||||||| Sbjct: 628 aagaagggcaagggcgccgc 647
>gb|DQ428089.1| Sorghum bicolor voucher NSL56174 locus PRC0162 genomic sequence Length = 797 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 aagaagggcaagggcgccgc 196 |||||||||||||||||||| Sbjct: 628 aagaagggcaagggcgccgc 647
>gb|DQ428088.1| Sorghum bicolor voucher NSL56003 locus PRC0162 genomic sequence Length = 797 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 aagaagggcaagggcgccgc 196 |||||||||||||||||||| Sbjct: 628 aagaagggcaagggcgccgc 647
>gb|DQ428087.1| Sorghum bicolor voucher NSL55243 locus PRC0162 genomic sequence Length = 797 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 aagaagggcaagggcgccgc 196 |||||||||||||||||||| Sbjct: 628 aagaagggcaagggcgccgc 647
>gb|DQ428086.1| Sorghum bicolor voucher NSL51365 locus PRC0162 genomic sequence Length = 797 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 aagaagggcaagggcgccgc 196 |||||||||||||||||||| Sbjct: 628 aagaagggcaagggcgccgc 647
>gb|DQ428085.1| Sorghum bicolor voucher NSL51030 locus PRC0162 genomic sequence Length = 797 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 aagaagggcaagggcgccgc 196 |||||||||||||||||||| Sbjct: 628 aagaagggcaagggcgccgc 647
>gb|DQ428084.1| Sorghum bicolor voucher NSL50875 locus PRC0162 genomic sequence Length = 797 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 aagaagggcaagggcgccgc 196 |||||||||||||||||||| Sbjct: 628 aagaagggcaagggcgccgc 647
>gb|AC117578.9| Mus musculus chromosome 5, clone RP23-36I22, complete sequence Length = 213371 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 aaagcactacactaaacaaa 432 |||||||||||||||||||| Sbjct: 83080 aaagcactacactaaacaaa 83099
>gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, partial sequence Length = 268433 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 ggaagaagaagggcaagggc 191 |||||||||||||||||||| Sbjct: 2731 ggaagaagaagggcaagggc 2750
>gb|AC011372.7| Homo sapiens chromosome 5 clone CTB-108B20, complete sequence Length = 183330 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 ccctcgccctccactctcctcctt 29 |||||||||||| ||||||||||| Sbjct: 23091 ccctcgccctcccctctcctcctt 23114
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 ggcgccgccggcgatgatga 208 |||||||||||||||||||| Sbjct: 2704315 ggcgccgccggcgatgatga 2704296
>gb|AY104032.1| Zea mays PCO099184 mRNA sequence Length = 1242 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 gcctccgcaaaaccctcctc 95 |||||||||||||||||||| Sbjct: 7 gcctccgcaaaaccctcctc 26
>gb|AC130103.4| Rattus norvegicus BAC CH230-41L20 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 224716 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 cctccactctcctcctttcc 32 |||||||||||||||||||| Sbjct: 110683 cctccactctcctcctttcc 110664 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,387,301 Number of Sequences: 3902068 Number of extensions: 3387301 Number of successful extensions: 101807 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100951 Number of HSP's gapped (non-prelim): 856 length of query: 438 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 416 effective length of database: 17,147,199,772 effective search space: 7133235105152 effective search space used: 7133235105152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
