>YKU2_YEAST (P36042) Hypothetical 21.2 kDa protein in TOR2-MNN4 intergenic|
           region
          Length = 193

 Score = 35.4 bits (80), Expect = 0.066
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
 Frame = +3

Query: 9   LFPITPAASLPDLCRRIPPASGSLHRCHSSALALPSFISPPLAISATPLFAWI---STAG 179
           L P + +  LP     +PPAS  L     S+L LPSF S PL     P F+++   S++ 
Sbjct: 105 LLPASSSLLLPSSFSPLPPASSFLLLPSFSSLLLPSFSSLPL-----PSFSFLLLPSSSF 159

Query: 180 ELLPSPTEASRFIAPVAVGSPSSDFFFVS 266
            LLPS +       P +  SPS+ F  V+
Sbjct: 160 PLLPSSSSP----LPPSSSSPSAFFLQVT 184

>MARCS_MOUSE (P26645) Myristoylated alanine-rich C-kinase substrate (MARCKS)|
          Length = 308

 Score = 33.5 bits (75), Expect = 0.25
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
 Frame = -3

Query: 277 FCARETKKKSEDGLP----TATGAMNREASVGEGRSSPAVEIQAKRGVAEMARGGDMKEG 110
           F  +++KK+S +G      TA GA +  A+   G  + A   QA    AE A GG+ +E 
Sbjct: 161 FSFKKSKKESGEGAEAEGATAEGAKDEAAAAAGGEGAAAPGEQAGGAGAEGAAGGEPREA 220

Query: 109 KARAEEWQRWRDPDAGGMRRQRSGRDAAG 23
           +A   E     +  A    +     +AAG
Sbjct: 221 EAAEPEQPEQPEQPAAEEPQAEEQSEAAG 249

>RECR_ENTFA (Q830L4) Recombination protein recR|
          Length = 198

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 228 AVGSPSSDFFFVSLAQNMDEENPVELLQRYRRDRHVLL 341
           A+ S   D  F S+  N+ EE+P E+ Q   RDR ++L
Sbjct: 46  ALISVKRDLHFCSICGNITEEDPCEICQDKNRDRSIIL 83

>CR1AB_BACTK (P0A370) Pesticidal crystal protein cry1Ab (Insecticidal|
           delta-endotoxin CryIA(b)) (Crystaline entomocidal
           protoxin) (130 kDa crystal protein)
          Length = 1155

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +3

Query: 36  LPDLCRRIPPASGSLHRCHSSALALPSFISPPLAISATPLFAWISTAGE---LLPS 194
           +P     +PP  G  HR    ++    F +  ++I   P+F+WI  + E   ++PS
Sbjct: 413 IPPQNNNVPPRQGFSHRLSHVSMFRSGFSNSSVSIIRAPMFSWIHRSAEFNNIIPS 468

>CR1AB_BACTB (P0A371) Pesticidal crystal protein cry1Ab (Insecticidal|
           delta-endotoxin CryIA(b)) (Crystaline entomocidal
           protoxin) (130 kDa crystal protein)
          Length = 1155

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +3

Query: 36  LPDLCRRIPPASGSLHRCHSSALALPSFISPPLAISATPLFAWISTAGE---LLPS 194
           +P     +PP  G  HR    ++    F +  ++I   P+F+WI  + E   ++PS
Sbjct: 413 IPPQNNNVPPRQGFSHRLSHVSMFRSGFSNSSVSIIRAPMFSWIHRSAEFNNIIPS 468

>CR1AB_BACTA (P0A372) Pesticidal crystal protein cry1Ab (Insecticidal|
           delta-endotoxin CryIA(b)) (Crystaline entomocidal
           protoxin) (130 kDa crystal protein)
          Length = 1155

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +3

Query: 36  LPDLCRRIPPASGSLHRCHSSALALPSFISPPLAISATPLFAWISTAGE---LLPS 194
           +P     +PP  G  HR    ++    F +  ++I   P+F+WI  + E   ++PS
Sbjct: 413 IPPQNNNVPPRQGFSHRLSHVSMFRSGFSNSSVSIIRAPMFSWIHRSAEFNNIIPS 468

>CR1AF_BACTU (P96315) Pesticidal crystal protein cry1Af (Insecticidal|
           delta-endotoxin CryIA(f)) (Crystaline entomocidal
           protoxin) (Fragment)
          Length = 911

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +3

Query: 36  LPDLCRRIPPASGSLHRCHSSALALPSFISPPLAISATPLFAWISTAGE---LLPS 194
           +P     +PP  G  HR    ++    F +  ++I   P+F+WI  + E   ++PS
Sbjct: 410 IPPQNNNVPPRQGFSHRLSHVSMFRSGFSNSSVSIIRAPMFSWIHRSAEFNNIIPS 465

>CR1AE_BACTL (Q03748) Pesticidal crystal protein cry1Ae (Insecticidal|
           delta-endotoxin CryIA(e)) (Crystaline entomocidal
           protoxin) (134 kDa crystal protein)
          Length = 1181

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +3

Query: 36  LPDLCRRIPPASGSLHRCHSSALALPSFISPPLAISATPLFAWISTAGE---LLPS 194
           +P     +PP  G  HR    ++    F +  ++I   P+F+WI  + E   ++PS
Sbjct: 413 IPPQDNNVPPRQGFSHRLSHVSMFRSGFSNSSVSIIRAPMFSWIHRSAEFNNIIPS 468

>CR1AC_BACTK (P05068) Pesticidal crystal protein cry1Ac (Insecticidal|
           delta-endotoxin CryIA(c)) (Crystaline entomocidal
           protoxin) (133 kDa crystal protein)
          Length = 1178

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 36  LPDLCRRIPPASGSLHRCHSSALALPSFISPPLAISATPLFAWISTAGE 182
           +P     +PP  G  HR    ++    F +  ++I   P+F+WI  + E
Sbjct: 413 IPPQNNNVPPRQGFSHRLSHVSMFRSGFSNSSVSIIRAPMFSWIHRSAE 461

>RUVA_CORJK (Q4JVD8) Holliday junction ATP-dependent DNA helicase ruvA (EC|
           3.6.1.-)
          Length = 211

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
 Frame = -3

Query: 226 TGAMNREASVGEGRSSPAVEIQAKRGVAEMARGGDMKEGKARA------EEWQRWRDPDA 65
           TGA+    +VG+G    AV    +  V E   G    E KA         +W   + PDA
Sbjct: 140 TGAVGAAGAVGDGGDGQAVAPDVREQVLEALVGLGFTESKAGTTIEAVLSQWSAPQAPDA 199

Query: 64  GGMRR 50
            G+ R
Sbjct: 200 SGLLR 204

>POLG_ZYMVS (O36979) Genome polyprotein [Contains: P1 proteinase (N-terminal|
           protein); Helper component proteinase (EC 3.4.22.45)
           (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
           inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
           (6K2); Viral ge
          Length = 3083

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 282 DEENPVELLQRYRRDRHVLLNYILSGNLIKKVVMPPGAISLDDVDTDQVSVDYVL 446
           D+  PVE++ + RR+ H L      G+ + KV + P    +  V+      DY+L
Sbjct: 192 DKNIPVEIIGK-RRNHHTLTFKKFKGSFVGKVSLAPERSQMKHVEMSYGQFDYIL 245

>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 5    LPFPDNPSSVPSGSLPPHPTRI 70
            LPF D P +VP+G LPP P +I
Sbjct: 3489 LPFLDTPKTVPAG-LPPSPVKI 3509

>USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A protein homolog)|
            (Usher syndrome type IIa protein homolog)
          Length = 5193

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
 Frame = +3

Query: 54   RIPPASGSLH--RCHSSAL-ALPSFISPPLAISATPLFAWISTAGEL-LPSPTEASRFI- 218
            R+P AS  LH    HS  L  L  F S  + ++A        ++  L + +P EA + + 
Sbjct: 1992 RVPSASTELHDTSTHSGVLIGLHPFHSYTVTLTACSRAGCTESSQALSISTPQEAPQEVQ 2051

Query: 219  APVAVGSPSSDFFFVSL 269
            APVAV  P+S  FF SL
Sbjct: 2052 APVAVALPNSLSFFWSL 2068

>HXB3_HUMAN (P14651) Homeobox protein Hox-B3 (Hox-2G) (Hox-2.7)|
          Length = 431

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
 Frame = +3

Query: 9   LFPITPAASLPDLCRRIPPASGSLHRCHSSALALPSFISPPLAISATPLFAWISTAGELL 188
           L  +TP+   P      PPA G   + H +A ALPS   PPL     P     + A E  
Sbjct: 279 LHSMTPSYESPS-----PPAFG---KAHQNAYALPSNYQPPLKGCGAPQKYPPTPAPEYE 330

Query: 189 PSPTEAS--RFIAPVAVGSP 242
           P   +A+   +  P   GSP
Sbjct: 331 PHVLQANGGAYGTPTMQGSP 350

>YOR6_CALSR (P40983) Hypothetical protein in xynA 3'region (ORF6) (Fragment)|
          Length = 402

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +3

Query: 303 LLQRYRRDRHVLLNYILSGNLIKKVVMPPGAISLDDVDTDQVSVDYV 443
           +L +++R +  L+NY+L  NL+   V+P  ++      + +V VD +
Sbjct: 52  VLGQFKRGKSTLINYMLGANLLPTGVLPLTSVITKIYYSPEVKVDVI 98

>HIBN_XENLA (P06180) Histone-binding protein N1/N2|
          Length = 589

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
 Frame = -3

Query: 271 ARETKKKSEDGLPTATGAMNREASVG-EGRSSPAVEIQAKR-----GVAEMARGGDMKEG 110
           A+ET  +S D    A   M+ EAS   E  S P  E +A +      + E   G D +E 
Sbjct: 247 AKETANQSPDSTEVAEEKMDSEASESKESTSIPPTENEANKPDDPEKMEEEEEGEDSEEN 306

Query: 109 KARAE-----EWQRWRDPDAGGMRRQRSGRDAAGVIGKRQQ 2
           +   E     E +   + D G ++      D    I KRQQ
Sbjct: 307 EDGTEENEGTEEKETEEEDVGNLQLAWEMLDLCKTIFKRQQ 347

>SLA2_YEAST (P33338) Protein SLA2 (Transmembrane protein MOP2)|
          Length = 968

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 168 STAGELLPSPTEASRFIAPVAVGSPSSDFFFVSLAQNMDEENPVE 302
           +T G ++P+ T A+  I P A      DF+    AQ  +E+N +E
Sbjct: 331 ATTGMMIPTATGAANAIFPQATAQMQPDFWANQQAQFANEQNRLE 375

>MEF2B_MOUSE (O55087) Myocyte-specific enhancer factor 2B|
          Length = 349

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
 Frame = +3

Query: 9   LFPITPAASLPDLCRRIPPAS--------GSLHRCHSSALALPSFISPP 131
           ++P+ PA S+ +L  R+PPA+        G +   HS     P++  PP
Sbjct: 130 IYPVAPAMSVSELSYRVPPATPGCDPGGLGEVPSVHSR----PAYFRPP 174

>DGK1_DROME (Q01583) Diacylglycerol kinase 1 (EC 2.7.1.107) (Diglyceride kinase|
           1) (DGK 1) (DAG kinase 1)
          Length = 1020

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
 Frame = +3

Query: 63  PASGSLHRCHSSALALPSFISPPLAISATPLFAWISTAGELLPSPTEASRFIAPVAVGSP 242
           PA+ SL++C ++ALA+    +PP+  S+T     +S A ++     + S F  P+ +  P
Sbjct: 27  PATLSLNKCTATALAVLQCSTPPIHSSST-----LSFAADIKLLARKLSHF-DPLTLKVP 80

Query: 243 SSDFF-FVSLAQNMDEENPVELLQR-YRRDRHVLLN 344
             D   ++SL +    E+ +E + R Y  D + +L+
Sbjct: 81  LKDVVCYLSLLEAGRPEDKLEFMFRLYDTDSNGVLD 116

>YL205_MIMIV (Q5UQ24) Putative serine/threonine-protein kinase L205 (EC|
           2.7.11.1)
          Length = 542

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 228 AVGSPSSDFFFVSLAQNMDEENPVELLQRYRRDRHVLLNYILSGN--LIKKV 377
           +VG  S D +  ++  N D+E   E +Q Y  D  +   ++L G   L+KK+
Sbjct: 24  SVGHNSDDEYDDTVPYNEDDETSEEEVQEYNEDEVIHPGFVLKGTYLLLKKI 75

>HXB3_MOUSE (P09026) Homeobox protein Hox-B3 (Hox-2.7) (MH-23)|
          Length = 433

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
 Frame = +3

Query: 9   LFPITPAASLPDLCRRIPPASGSLHRCHSSALALPSFISPPLAISATPLFAWISTAGELL 188
           L  +TP+   P      PPA G   + H +A ALPS   PPL     P     + A E  
Sbjct: 282 LHSMTPSYDSPS-----PPAFG---KGHQNAYALPSNYQPPLKGCGAPQKYPPTPASEYE 333

Query: 189 PSPTEAS--RFIAPVAVGSP 242
           P   +A+   +  P   GSP
Sbjct: 334 PHVLQANGGAYGTPTMQGSP 353

>FILA_MOUSE (P11088) Filaggrin (Fragment)|
          Length = 336

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
 Frame = -3

Query: 220 AMNREASVGE--GRSSPAVEIQAKRGVAEMARGGDMKEGKARAEEWQ---RWRDPDAGGM 56
           A  R  S G+  GR S + + Q +RGV+E +R  D  EG +   E Q     R   AG  
Sbjct: 80  AQGRAGSQGQAQGRVSSSADRQGRRGVSE-SRASD-SEGHSDFSEGQAVGAHRQSGAGQR 137

Query: 55  RRQRSGRDAAG 23
             QRS R   G
Sbjct: 138 HEQRSSRGQHG 148

>VRP1_YEAST (P37370) Verprolin|
          Length = 817

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 22/101 (21%)
 Frame = +3

Query: 15  PITPAASLPDL------CRRIP------PASGSLHRCH---SSALALPSFISPPLAISAT 149
           PI P++  P L        ++P      P+    HR H   SS ++LPS  +PPL  ++ 
Sbjct: 169 PIVPSSPAPPLPLSGASAPKVPQNRPHMPSVRPAHRSHQRKSSNISLPSVSAPPLPSASL 228

Query: 150 PLFAWISTAGELLPSPTEA-----SRFIAPV--AVGSPSSD 251
           P    +S   +  P P        S+ I P   AV  PSS+
Sbjct: 229 P--THVSNPPQAPPPPPTPTIGLDSKNIKPTDNAVSPPSSE 267

>EF2_SCHPO (O14460) Elongation factor 2 (EF-2)|
          Length = 842

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -3

Query: 241 GLPTATGAMNREASVGEGRSSPAVEIQAKRGVAEMARGGDMKEGKARAEEWQR 83
           G P+    M+  A V  G+S+    +  K G+   A+ GD +    RA+E +R
Sbjct: 14  GKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQER 66

>IR09_HCMVA (P16807) Hypothetical protein IRL9 (TRL9)|
          Length = 143

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 21/102 (20%)
 Frame = -3

Query: 268 RETKKKSEDGLPTATGAMNREASVGEGRSSPAVEIQAKRGVAEMARGGDMKEGKARAEEW 89
           R T++      PT  G   R  ++  G +SP +  ++ RG       GD +E    A E 
Sbjct: 41  RRTRRGDASPRPTGCGGERRAPAIPGGATSPHMSRRSGRGPV-----GDGREASRTAAEE 95

Query: 88  QRWR-------------------DPDAGGMR--RQRSGRDAA 26
           +R R                   DPDA G       +G+DAA
Sbjct: 96  KRRRKENYRQGPGFLLEKQHVGQDPDANGNHDDDDHAGQDAA 137

>YQGA_CAEEL (Q5FC79) Hypothetical protein C41C4.10|
          Length = 331

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 120 ISPPLAISATPLFAWISTAGELLPSPT 200
           + PP  +S    F WI+  G LLP+P+
Sbjct: 93  VLPPFRMSGFVPFGWITVTGMLLPNPS 119

>Y6G2_ENCCU (Q8SV63) Hypothetical protein ECU06_1620|
          Length = 579

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 18/82 (21%)
 Frame = -3

Query: 208 EASVGEGRSSPAVEIQ-AKRGVAEMARGGDM------------KEGKARAEEW-----QR 83
           E   GE    P++EI  A+R   + +RGG              K  +   EEW     +R
Sbjct: 353 EVEAGEEAEMPSMEIGGARRKTGKKSRGGRKRYKIHKRVSRWRKSPEKIKEEWDRESEER 412

Query: 82  WRDPDAGGMRRQRSGRDAAGVI 17
           WR      ++ Q+   D AGV+
Sbjct: 413 WRGRSLEEIKEQKVFHDIAGVL 434


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,480,192
Number of Sequences: 219361
Number of extensions: 1151022
Number of successful extensions: 4298
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 4117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4295
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)