ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl54a10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK065067.1| Oryza sativa (japonica cultivar-group) cDNA clon... 220 3e-54
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 198 1e-47
3gb|AC087412.14| Oryza sativa chromosome 3 BAC OSJNBb0070O09 geno... 198 1e-47
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 198 1e-47
5gb|AC087851.4|AC087851 Oryza sativa chromosome 3 BAC OSJNBb0072E... 198 1e-47
6ref|XM_469322.1| Oryza sativa (japonica cultivar-group), mRNA 143 6e-31
7gb|AC149307.17| Medicago truncatula clone mth2-91a15, complete s... 66 1e-07
8ref|NM_120779.2| Arabidopsis thaliana unknown protein AT5G06970 ... 62 2e-06
9gb|AY090450.1| Arabidopsis thaliana AT5g06970/MOJ9_14 mRNA, comp... 62 2e-06
10emb|BX831645.1|CNS09YVF Arabidopsis thaliana Full-length cDNA Co... 62 2e-06
11gb|BT002724.1| Arabidopsis thaliana At5g06970/MOJ9_14 gene, comp... 62 2e-06
12dbj|AB010697.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 62 2e-06
13ref|XM_734580.1| Plasmodium chabaudi chabaudi hypothetical prote... 48 0.025
14ref|XM_674798.1| Plasmodium berghei strain ANKA hypothetical pro... 46 0.098
15emb|AL137139.9| Human DNA sequence from clone RP11-134O15 on chr... 42 1.5
16ref|XM_724004.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 6.1
17ref|XM_782198.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.1
18gb|AC160630.1| Uncultured bacterium zdt-25h14 clone zdt-25h14, c... 40 6.1
19gb|AC134587.3| Mus musculus BAC clone RP23-306P12 from chromosom... 40 6.1
20gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 6.1 
>dbj|AK065067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J22, full
           insert sequence
          Length = 3932

 Score =  220 bits (111), Expect = 3e-54
 Identities = 168/187 (89%)
 Strand = Plus / Plus

                                                                       
Query: 264 tcccttgcacaaaatatggacgaagaaaatcctgttgagctgctacaacgttatcgccgt 323
           |||| ||||||  |||||||||||||||||  |||||||||||| |||||||||||||||
Sbjct: 235 tcccctgcacacgatatggacgaagaaaatgttgttgagctgctgcaacgttatcgccgt 294

                                                                       
Query: 324 gatcgccatgtgttactcaattacatcctttccggtaacttgatcaagaaagttgtaatg 383
           || || ||||| || ||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct: 295 gaccgtcatgtattgctcaactacatgctttctggtaacttgatcaagaaagttgtaatg 354

                                                                       
Query: 384 ccgcctggtgctatctctctggatgatgtggataccgatcaagtcagtgttgattatgtc 443
           || |||||||| |||||| |||||||||||||||  |||||||||||||||||||| |||
Sbjct: 355 cctcctggtgcgatctctttggatgatgtggatatagatcaagtcagtgttgattacgtc 414

                  
Query: 444 ctcaatt 450
           |||||||
Sbjct: 415 ctcaatt 421
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  198 bits (100), Expect = 1e-47
 Identities = 148/164 (90%)
 Strand = Plus / Plus

                                                                            
Query: 287      agaaaatcctgttgagctgctacaacgttatcgccgtgatcgccatgtgttactcaatta 346
                |||||||  |||||||||||| ||||||||||||||||| || ||||| || ||||| ||
Sbjct: 26948060 agaaaatgttgttgagctgctgcaacgttatcgccgtgaccgtcatgtattgctcaacta 26948119

                                                                            
Query: 347      catcctttccggtaacttgatcaagaaagttgtaatgccgcctggtgctatctctctgga 406
                ||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||| ||||
Sbjct: 26948120 catgctttctggtaacttgatcaagaaagttgtaatgcctcctggtgcgatctctttgga 26948179

                                                            
Query: 407      tgatgtggataccgatcaagtcagtgttgattatgtcctcaatt 450
                |||||||||||  |||||||||||||||||||| ||||||||||
Sbjct: 26948180 tgatgtggatatagatcaagtcagtgttgattacgtcctcaatt 26948223
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>gb|AC087412.14| Oryza sativa chromosome 3 BAC OSJNBb0070O09 genomic sequence, complete
              sequence
          Length = 149303

 Score =  198 bits (100), Expect = 1e-47
 Identities = 148/164 (90%)
 Strand = Plus / Plus

                                                                          
Query: 287    agaaaatcctgttgagctgctacaacgttatcgccgtgatcgccatgtgttactcaatta 346
              |||||||  |||||||||||| ||||||||||||||||| || ||||| || ||||| ||
Sbjct: 127060 agaaaatgttgttgagctgctgcaacgttatcgccgtgaccgtcatgtattgctcaacta 127119

                                                                          
Query: 347    catcctttccggtaacttgatcaagaaagttgtaatgccgcctggtgctatctctctgga 406
              ||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||| ||||
Sbjct: 127120 catgctttctggtaacttgatcaagaaagttgtaatgcctcctggtgcgatctctttgga 127179

                                                          
Query: 407    tgatgtggataccgatcaagtcagtgttgattatgtcctcaatt 450
              |||||||||||  |||||||||||||||||||| ||||||||||
Sbjct: 127180 tgatgtggatatagatcaagtcagtgttgattacgtcctcaatt 127223
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  198 bits (100), Expect = 1e-47
 Identities = 148/164 (90%)
 Strand = Plus / Plus

                                                                            
Query: 287      agaaaatcctgttgagctgctacaacgttatcgccgtgatcgccatgtgttactcaatta 346
                |||||||  |||||||||||| ||||||||||||||||| || ||||| || ||||| ||
Sbjct: 27039383 agaaaatgttgttgagctgctgcaacgttatcgccgtgaccgtcatgtattgctcaacta 27039442

                                                                            
Query: 347      catcctttccggtaacttgatcaagaaagttgtaatgccgcctggtgctatctctctgga 406
                ||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||| ||||
Sbjct: 27039443 catgctttctggtaacttgatcaagaaagttgtaatgcctcctggtgcgatctctttgga 27039502

                                                            
Query: 407      tgatgtggataccgatcaagtcagtgttgattatgtcctcaatt 450
                |||||||||||  |||||||||||||||||||| ||||||||||
Sbjct: 27039503 tgatgtggatatagatcaagtcagtgttgattacgtcctcaatt 27039546
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>gb|AC087851.4|AC087851 Oryza sativa chromosome 3 BAC OSJNBb0072E24 genomic sequence, complete
              sequence
          Length = 111882

 Score =  198 bits (100), Expect = 1e-47
 Identities = 148/164 (90%)
 Strand = Plus / Minus

                                                                          
Query: 287    agaaaatcctgttgagctgctacaacgttatcgccgtgatcgccatgtgttactcaatta 346
              |||||||  |||||||||||| ||||||||||||||||| || ||||| || ||||| ||
Sbjct: 111339 agaaaatgttgttgagctgctgcaacgttatcgccgtgaccgtcatgtattgctcaacta 111280

                                                                          
Query: 347    catcctttccggtaacttgatcaagaaagttgtaatgccgcctggtgctatctctctgga 406
              ||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||| ||||
Sbjct: 111279 catgctttctggtaacttgatcaagaaagttgtaatgcctcctggtgcgatctctttgga 111220

                                                          
Query: 407    tgatgtggataccgatcaagtcagtgttgattatgtcctcaatt 450
              |||||||||||  |||||||||||||||||||| ||||||||||
Sbjct: 111219 tgatgtggatatagatcaagtcagtgttgattacgtcctcaatt 111176
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>ref|XM_469322.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3593

 Score =  143 bits (72), Expect = 6e-31
 Identities = 93/100 (93%)
 Strand = Plus / Plus

                                                                       
Query: 351 ctttccggtaacttgatcaagaaagttgtaatgccgcctggtgctatctctctggatgat 410
           ||||| ||||||||||||||||||||||||||||| |||||||| |||||| ||||||||
Sbjct: 4   ctttctggtaacttgatcaagaaagttgtaatgcctcctggtgcgatctctttggatgat 63

                                                   
Query: 411 gtggataccgatcaagtcagtgttgattatgtcctcaatt 450
           |||||||  |||||||||||||||||||| ||||||||||
Sbjct: 64  gtggatatagatcaagtcagtgttgattacgtcctcaatt 103
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>gb|AC149307.17| Medicago truncatula clone mth2-91a15, complete sequence
          Length = 136553

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                         
Query: 366   atcaagaaagttgtaatgccgcctggtgctatctctctggatgatgtggataccgatcaa 425
             |||||||||||||||||||| ||||| ||| |  | || ||||||||||||   ||||||
Sbjct: 47084 atcaagaaagttgtaatgccacctggcgctgttacactagatgatgtggatctagatcaa 47025

                              
Query: 426   gtcagtgttgattatgt 442
             |||||| ||||||||||
Sbjct: 47024 gtcagtattgattatgt 47008
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>ref|NM_120779.2| Arabidopsis thaliana unknown protein AT5G06970 mRNA, complete cds
          Length = 3781

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 73/87 (83%)
 Strand = Plus / Plus

                                                                       
Query: 357 ggtaacttgatcaagaaagttgtaatgccgcctggtgctatctctctggatgatgtggat 416
           |||| ||| |||||||||||| ||||||| ||||||||| |  |||| || ||||| |||
Sbjct: 351 ggtagcttaatcaagaaagttataatgcctcctggtgctgtgactcttgacgatgttgat 410

                                      
Query: 417 accgatcaagtcagtgttgattatgtc 443
              |||||||| |||||||||||||||
Sbjct: 411 ttagatcaagttagtgttgattatgtc 437
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>gb|AY090450.1| Arabidopsis thaliana AT5g06970/MOJ9_14 mRNA, complete cds
          Length = 3781

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 73/87 (83%)
 Strand = Plus / Plus

                                                                       
Query: 357 ggtaacttgatcaagaaagttgtaatgccgcctggtgctatctctctggatgatgtggat 416
           |||| ||| |||||||||||| ||||||| ||||||||| |  |||| || ||||| |||
Sbjct: 351 ggtagcttaatcaagaaagttataatgcctcctggtgctgtgactcttgacgatgttgat 410

                                      
Query: 417 accgatcaagtcagtgttgattatgtc 443
              |||||||| |||||||||||||||
Sbjct: 411 ttagatcaagttagtgttgattatgtc 437
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>emb|BX831645.1|CNS09YVF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH20ZF07 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 3699

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 73/87 (83%)
 Strand = Plus / Plus

                                                                       
Query: 357 ggtaacttgatcaagaaagttgtaatgccgcctggtgctatctctctggatgatgtggat 416
           |||| ||| |||||||||||| ||||||| ||||||||| |  |||| || ||||| |||
Sbjct: 323 ggtagcttaatcaagaaagttataatgcctcctggtgctgtgactcttgacgatgttgat 382

                                      
Query: 417 accgatcaagtcagtgttgattatgtc 443
              |||||||| |||||||||||||||
Sbjct: 383 ttagatcaagttagtgttgattatgtc 409
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>gb|BT002724.1| Arabidopsis thaliana At5g06970/MOJ9_14 gene, complete cds
          Length = 3306

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 73/87 (83%)
 Strand = Plus / Plus

                                                                       
Query: 357 ggtaacttgatcaagaaagttgtaatgccgcctggtgctatctctctggatgatgtggat 416
           |||| ||| |||||||||||| ||||||| ||||||||| |  |||| || ||||| |||
Sbjct: 79  ggtagcttaatcaagaaagttataatgcctcctggtgctgtgactcttgacgatgttgat 138

                                      
Query: 417 accgatcaagtcagtgttgattatgtc 443
              |||||||| |||||||||||||||
Sbjct: 139 ttagatcaagttagtgttgattatgtc 165
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>dbj|AB010697.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOJ9
          Length = 86380

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 73/87 (83%)
 Strand = Plus / Minus

                                                                         
Query: 357   ggtaacttgatcaagaaagttgtaatgccgcctggtgctatctctctggatgatgtggat 416
             |||| ||| |||||||||||| ||||||| ||||||||| |  |||| || ||||| |||
Sbjct: 44786 ggtagcttaatcaagaaagttataatgcctcctggtgctgtgactcttgacgatgttgat 44727

                                        
Query: 417   accgatcaagtcagtgttgattatgtc 443
                |||||||| |||||||||||||||
Sbjct: 44726 ttagatcaagttagtgttgattatgtc 44700
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>ref|XM_734580.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000917.02.0)
           partial mRNA
          Length = 1419

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 270 gcacaaaatatggacgaagaaaat 293
           ||||||||||||||||||||||||
Sbjct: 88  gcacaaaatatggacgaagaaaat 111
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>ref|XM_674798.1| Plasmodium berghei strain ANKA hypothetical protein (PB001116.00.0)
           partial mRNA
          Length = 2424

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 271 cacaaaatatggacgaagaaaat 293
           |||||||||||||||||||||||
Sbjct: 854 cacaaaatatggacgaagaaaat 876
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>emb|AL137139.9| Human DNA sequence from clone RP11-134O15 on chromosome 13 Contains the
              3' end of the CLYBL gene for citrate lyase beta like (CLB
              bA134O15.1) and a CpG island, complete sequence
          Length = 174128

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 77     tctccaccgctgccactcctc 97
              |||||||||||||||||||||
Sbjct: 162545 tctccaccgctgccactcctc 162565
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>ref|XM_724004.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01359)
           partial mRNA
          Length = 3576

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 270 gcacaaaatatggacgaagaaaat 293
           ||||||||||||||||| ||||||
Sbjct: 853 gcacaaaatatggacgaggaaaat 876
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>ref|XM_782198.1| PREDICTED: Strongylocentrotus purpuratus similar to SEC3-like 1
            (LOC582238), mRNA
          Length = 2928

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 359  taacttgatcaagaaagttg 378
            ||||||||||||||||||||
Sbjct: 2721 taacttgatcaagaaagttg 2740
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>gb|AC160630.1| Uncultured bacterium zdt-25h14 clone zdt-25h14, complete sequence
          Length = 37210

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 342   aattacatcctttccggtaa 361
             ||||||||||||||||||||
Sbjct: 11980 aattacatcctttccggtaa 11999
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>gb|AC134587.3| Mus musculus BAC clone RP23-306P12 from chromosome 7, complete sequence
          Length = 166576

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   gccctccttcatatccccac 129
             ||||||||||||||||||||
Sbjct: 67018 gccctccttcatatccccac 66999
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 165     atctccaccgccggcgagct 184
               ||||||||||||||||||||
Sbjct: 2847027 atctccaccgccggcgagct 2847046


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,030,592
Number of Sequences: 3902068
Number of extensions: 3030592
Number of successful extensions: 60076
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59979
Number of HSP's gapped (non-prelim): 92
length of query: 450
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 428
effective length of database: 17,147,199,772
effective search space: 7339001502416
effective search space used: 7339001502416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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