>NCAP_IHNV (P19691) Nucleocapsid protein (Nucleoprotein)|
          Length = 413

 Score = 32.3 bits (72), Expect = 0.67
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 32  LHSSDHQPPPASAPADPTRVLL 97
           +HSS+HQ PP   P DP+R LL
Sbjct: 388 IHSSEHQQPPLLPPLDPSRRLL 409

>MECT1_MOUSE (Q68ED7) Mucoepidermoid carcinoma translocated protein 1 homolog|
          Length = 630

 Score = 32.0 bits (71), Expect = 0.88
 Identities = 24/78 (30%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
 Frame = +2

Query: 47  HQPPPASAPADPTRVLLDSAPRNKKERPF*CLASXXXXXXXXXXXXXXQAAGTSA-SSAP 223
           H P P   P DP            +E PF  L S                 G +  SS+P
Sbjct: 253 HFPSPLPTPLDP------------EEPPFPALTSSSSTGSLAHLGVGGAGQGMNTPSSSP 300

Query: 224 NHRPASWAPSGWSTR*RR 277
            HRPA  +P   ST  RR
Sbjct: 301 QHRPAVVSPLSLSTEARR 318

>BPAEB_HUMAN (Q8WXK8) Bullous pemphigoid antigen 1, isoform 7 (Bullous|
           pemphigoid antigen) (BPA) (Hemidesmosomal plaque
           protein) (Dystonia musculorum protein) (Dystonin)
           (Fragment)
          Length = 3060

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 26/87 (29%), Positives = 35/87 (40%)
 Frame = -3

Query: 389 LQASQVLGMKSRLTPSXXXXXXXXXAFSGDINSNPTQSVVSGYSSRKGPSSPDGGSARNL 210
           L  S   G+   LTPS           SG + S  T SV   Y+    P  P G      
Sbjct: 188 LHPSLTSGLTQSLTPSLTSSSMTSGLSSG-MTSRLTPSVTPAYT----PGFPSG------ 236

Query: 209 RLFLLPAFSCTVDPDAASWVATLDIRK 129
              L+P FS  V+P++   +  + IRK
Sbjct: 237 ---LVPNFSSGVEPNSLQTLKLMQIRK 260

>BPA1_HUMAN (Q03001) Bullous pemphigoid antigen 1 isoforms 1/2/3/4/5/8 (230 kDa|
           bullous pemphigoid antigen) (BPA) (Hemidesmosomal plaque
           protein) (Dystonia musculorum protein) (Dystonin)
           (Fragment)
          Length = 3214

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 26/87 (29%), Positives = 35/87 (40%)
 Frame = -3

Query: 389 LQASQVLGMKSRLTPSXXXXXXXXXAFSGDINSNPTQSVVSGYSSRKGPSSPDGGSARNL 210
           L  S   G+   LTPS           SG + S  T SV   Y+    P  P G      
Sbjct: 698 LHPSLTSGLTQSLTPSLTSSSMTSGLSSG-MTSRLTPSVTPAYT----PGFPSG------ 746

Query: 209 RLFLLPAFSCTVDPDAASWVATLDIRK 129
              L+P FS  V+P++   +  + IRK
Sbjct: 747 ---LVPNFSSGVEPNSLQTLKLMQIRK 770

>BPAEA_HUMAN (O94833) Bullous pemphigoid antigen 1, isoforms 6/9/10|
           (Trabeculin-beta) (Bullous pemphigoid antigen) (BPA)
           (Hemidesmosomal plaque protein) (Dystonia musculorum
           protein) (Dystonin)
          Length = 5171

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 26/87 (29%), Positives = 35/87 (40%)
 Frame = -3

Query: 389 LQASQVLGMKSRLTPSXXXXXXXXXAFSGDINSNPTQSVVSGYSSRKGPSSPDGGSARNL 210
           L  S   G+   LTPS           SG + S  T SV   Y+    P  P G      
Sbjct: 188 LHPSLTSGLTQSLTPSLTSSSMTSGLSSG-MTSRLTPSVTPAYT----PGFPSG------ 236

Query: 209 RLFLLPAFSCTVDPDAASWVATLDIRK 129
              L+P FS  V+P++   +  + IRK
Sbjct: 237 ---LVPNFSSGVEPNSLQTLKLMQIRK 260

>HEM1_CHLVI (P28462) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR)|
          Length = 424

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 295 TQTPRSPSSAGTPAGRGPARRTVVRRGT 212
           T TPR+P ++ +P GR P  R     GT
Sbjct: 199 TCTPRTPGTSSSPTGRNPRPRACEELGT 226

>Y408_MYCPN (P75376) Hypothetical lipoprotein MPN408 precursor (F11_orf760)|
          Length = 760

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 394 VHATAEELLECQRYVNWSDPMRHSW 468
           VHA A+E  E Q+++NW    + +W
Sbjct: 625 VHANAKENAETQKFINWFINQKETW 649

>VE4_HPV04 (Q07852) Probable protein E4|
          Length = 181

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 8   IHTP*SSLLHSSDHQ-PPPASAPADPTRVLLDSAPRNKKERP 130
           +HTP  S L ++ +  PPPA+      R LL+   R    RP
Sbjct: 60  LHTPPPSTLRNNSYPGPPPATPKLPSRRALLEGGNRGNPTRP 101

>ASO_CUCPM (P37064) L-ascorbate oxidase (EC 1.10.3.3) (Ascorbase) (ASO)|
          Length = 552

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 26  SLLHSSDHQPPPASAPADPTRVLLDSAPRNKKER 127
           +LLH+ D  PPP   P D     +D+ P N+K R
Sbjct: 383 NLLHAFDQNPPPEVFPEDYD---IDTPPTNEKTR 413


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,573,600
Number of Sequences: 219361
Number of extensions: 1041959
Number of successful extensions: 3960
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3958
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)