ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl54a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IF2_GLUOX (Q5FQM3) Translation initiation factor IF-2 30 3.1
2SC10A_MOUSE (Q6QIY3) Sodium channel protein type 10 alpha subuni... 30 3.1
3Y4QF_RHISN (P55627) Probable peptidase y4qF (EC 3.4.21.-) 29 5.3
4BRCA2_FELCA (Q864S8) Breast cancer type 2 susceptibility protein... 29 6.9
5VRP1_YEAST (P37370) Verprolin 29 6.9
6GPC2_HUMAN (Q8N158) Glypican-2 precursor 29 6.9
7FBPC_AGRT5 (Q8U6M1) Ferric cations import ATP-binding protein fb... 28 9.1
8BTNL2_RAT (Q6MG97) Butyrophilin-like protein 2 precursor 28 9.1

>IF2_GLUOX (Q5FQM3) Translation initiation factor IF-2|
          Length = 917

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 17/107 (15%)
 Frame = -2

Query: 277 HDTSVVDLASPFHRLYPRSQKG---PR-----------PGSAHLTTRILGCASGSGGERE 140
           H T  V LA+P  RL P +++    PR           P   + T  +   A+  G +  
Sbjct: 196 HSTGGVQLAAPVQRLRPLAERAIMPPRPVQPSRPAAAAPARNNETLHLRSGAAAGGDDER 255

Query: 139 RESPRLASATLFLLPRD*APQNPNPPRR---GED*NKGGVERRGRSE 8
           R +PR +       P    P+ P+ P R   G D   G ++ R   E
Sbjct: 256 RPAPRRSGPGAPPAP----PRRPSAPSRKGGGSDRRSGRIDVRAAIE 298



to top

>SC10A_MOUSE (Q6QIY3) Sodium channel protein type 10 alpha subunit (Sodium|
           channel protein type X alpha subunit) (Voltage-gated
           sodium channel alpha subunit Nav1.8) (Peripheral nerve
           sodium channel 3) (Sensory neuron sodium channel)
          Length = 1958

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -2

Query: 100 LPRD*APQNPNP-PRRGED*NKG 35
           LPR   PQ+PNP PRRGE+  +G
Sbjct: 548 LPRSPLPQSPNPGPRRGEEGQRG 570



to top

>Y4QF_RHISN (P55627) Probable peptidase y4qF (EC 3.4.21.-)|
          Length = 754

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +3

Query: 141 SLSPPLPEAQPRIRVV 188
           SL PPLP A+PRIRV+
Sbjct: 36  SLRPPLPRAEPRIRVL 51



to top

>BRCA2_FELCA (Q864S8) Breast cancer type 2 susceptibility protein homolog (Fanconi|
            anemia group D1 protein homolog)
          Length = 3372

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -2

Query: 268  SVVDLASPFHRLYPRSQKGPRPGSAHLTTRILGCASGSGGERERESPR 125
            S ++  SP     P+++  P PGSA +T++     S   GERE + P+
Sbjct: 3166 SEMNYQSPLSLCKPKAKSVPTPGSAQMTSK-----SCYKGERELDDPK 3208



to top

>VRP1_YEAST (P37370) Verprolin|
          Length = 817

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = -1

Query: 239 PSLSSVPKRT*AWICTPHDPNPXXXXXXXXXXXXRV-APPRLGHPLSTTTRLGPSK 75
           P+++S PK+  +    P  P P                PP L  PL  TT + P+K
Sbjct: 336 PNVTSAPKKATSAPAPPPPPLPAAMSSASTNSVKATPVPPTLAPPLPNTTSVPPNK 391



to top

>GPC2_HUMAN (Q8N158) Glypican-2 precursor|
          Length = 579

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -2

Query: 166 ASGSGGERERESPRLASATLFLLPRD*APQNPNPPRRGED*NKGG 32
           ASGSGG ++     +A A   + P    P+ P PPRR     KGG
Sbjct: 499 ASGSGGGQQYADDWMAGA---VAPPARPPRPPYPPRRDGSGGKGG 540



to top

>FBPC_AGRT5 (Q8U6M1) Ferric cations import ATP-binding protein fbpC (EC|
           3.6.3.30)
          Length = 353

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = -2

Query: 274 DTSVVDLASPFHRLYPRSQKGPRPGSAHLTTR----ILGCASGSG 152
           D S+V + +  HR+  R   GPR GSA L  R     +G A GSG
Sbjct: 255 DESLVRVGTMEHRVRSR---GPRSGSAKLAVRPGAITIGAAGGSG 296



to top

>BTNL2_RAT (Q6MG97) Butyrophilin-like protein 2 precursor|
          Length = 454

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 43  SNPPLAVEG*GFEGPNLVVVERGW 114
           S+P + VEG G EG  LV   RGW
Sbjct: 146 SSPNIHVEGPGEEGVQLVCTSRGW 169


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,910,901
Number of Sequences: 219361
Number of extensions: 889976
Number of successful extensions: 2322
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2322
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top