Clone Name | bastl54a04 |
---|---|
Clone Library Name | barley_pub |
>IF2_GLUOX (Q5FQM3) Translation initiation factor IF-2| Length = 917 Score = 30.0 bits (66), Expect = 3.1 Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 17/107 (15%) Frame = -2 Query: 277 HDTSVVDLASPFHRLYPRSQKG---PR-----------PGSAHLTTRILGCASGSGGERE 140 H T V LA+P RL P +++ PR P + T + A+ G + Sbjct: 196 HSTGGVQLAAPVQRLRPLAERAIMPPRPVQPSRPAAAAPARNNETLHLRSGAAAGGDDER 255 Query: 139 RESPRLASATLFLLPRD*APQNPNPPRR---GED*NKGGVERRGRSE 8 R +PR + P P+ P+ P R G D G ++ R E Sbjct: 256 RPAPRRSGPGAPPAP----PRRPSAPSRKGGGSDRRSGRIDVRAAIE 298
>SC10A_MOUSE (Q6QIY3) Sodium channel protein type 10 alpha subunit (Sodium| channel protein type X alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.8) (Peripheral nerve sodium channel 3) (Sensory neuron sodium channel) Length = 1958 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%) Frame = -2 Query: 100 LPRD*APQNPNP-PRRGED*NKG 35 LPR PQ+PNP PRRGE+ +G Sbjct: 548 LPRSPLPQSPNPGPRRGEEGQRG 570
>Y4QF_RHISN (P55627) Probable peptidase y4qF (EC 3.4.21.-)| Length = 754 Score = 29.3 bits (64), Expect = 5.3 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = +3 Query: 141 SLSPPLPEAQPRIRVV 188 SL PPLP A+PRIRV+ Sbjct: 36 SLRPPLPRAEPRIRVL 51
>BRCA2_FELCA (Q864S8) Breast cancer type 2 susceptibility protein homolog (Fanconi| anemia group D1 protein homolog) Length = 3372 Score = 28.9 bits (63), Expect = 6.9 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = -2 Query: 268 SVVDLASPFHRLYPRSQKGPRPGSAHLTTRILGCASGSGGERERESPR 125 S ++ SP P+++ P PGSA +T++ S GERE + P+ Sbjct: 3166 SEMNYQSPLSLCKPKAKSVPTPGSAQMTSK-----SCYKGERELDDPK 3208
>VRP1_YEAST (P37370) Verprolin| Length = 817 Score = 28.9 bits (63), Expect = 6.9 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Frame = -1 Query: 239 PSLSSVPKRT*AWICTPHDPNPXXXXXXXXXXXXRV-APPRLGHPLSTTTRLGPSK 75 P+++S PK+ + P P P PP L PL TT + P+K Sbjct: 336 PNVTSAPKKATSAPAPPPPPLPAAMSSASTNSVKATPVPPTLAPPLPNTTSVPPNK 391
>GPC2_HUMAN (Q8N158) Glypican-2 precursor| Length = 579 Score = 28.9 bits (63), Expect = 6.9 Identities = 18/45 (40%), Positives = 23/45 (51%) Frame = -2 Query: 166 ASGSGGERERESPRLASATLFLLPRD*APQNPNPPRRGED*NKGG 32 ASGSGG ++ +A A + P P+ P PPRR KGG Sbjct: 499 ASGSGGGQQYADDWMAGA---VAPPARPPRPPYPPRRDGSGGKGG 540
>FBPC_AGRT5 (Q8U6M1) Ferric cations import ATP-binding protein fbpC (EC| 3.6.3.30) Length = 353 Score = 28.5 bits (62), Expect = 9.1 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 4/45 (8%) Frame = -2 Query: 274 DTSVVDLASPFHRLYPRSQKGPRPGSAHLTTR----ILGCASGSG 152 D S+V + + HR+ R GPR GSA L R +G A GSG Sbjct: 255 DESLVRVGTMEHRVRSR---GPRSGSAKLAVRPGAITIGAAGGSG 296
>BTNL2_RAT (Q6MG97) Butyrophilin-like protein 2 precursor| Length = 454 Score = 28.5 bits (62), Expect = 9.1 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +1 Query: 43 SNPPLAVEG*GFEGPNLVVVERGW 114 S+P + VEG G EG LV RGW Sbjct: 146 SSPNIHVEGPGEEGVQLVCTSRGW 169 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,910,901 Number of Sequences: 219361 Number of extensions: 889976 Number of successful extensions: 2322 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 2261 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2322 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)