>dbj|AK111544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045A10, full
           insert sequence
          Length = 3437

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                       
Query: 350 atgcagttcccttacgctggcgccttctcctcctcgcccgcgctctccctcgggctggac 409
           ||||||||||||| |||  | | |||| | |||||||| ||||||||||||| |||||||
Sbjct: 499 atgcagttccctttcgccagtggcttcgcgtcctcgccggcgctctccctcgcgctggac 558

                      
Query: 410 aacgccggcgg 420
           |||||||||||
Sbjct: 559 aacgccggcgg 569



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 57  cgccgtggagggttagggttttgaggg 83
           |||||||||||||||||||||||||||
Sbjct: 256 cgccgtggagggttagggttttgaggg 282

>dbj|AB101648.1| Oryza sativa (japonica cultivar-group) Roc5 mRNA for GL2-type
           homeodomain protein, complete cds
          Length = 3114

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                       
Query: 350 atgcagttcccttacgctggcgccttctcctcctcgcccgcgctctccctcgggctggac 409
           ||||||||||||| |||  | | |||| | |||||||| ||||||||||||| |||||||
Sbjct: 179 atgcagttccctttcgccagtggcttcgcgtcctcgccggcgctctccctcgcgctggac 238

                      
Query: 410 aacgccggcgg 420
           |||||||||||
Sbjct: 239 aacgccggcgg 249

>emb|Y17898.1|ZMA17898 Zea mays mRNA for encoding homeobox protein
          Length = 3092

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                          
Query: 374 ttctcctcctcgcccgcgctctccctcgggctggacaacgccggcgg 420
           ||||| |||||||| || ||||||||||| |||||||||||||||||
Sbjct: 294 ttctcgtcctcgccggccctctccctcggtctggacaacgccggcgg 340

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                           
Query: 57       cgccgtggagggttagggttttgaggg 83
                |||||||||||||||||||||||||||
Sbjct: 27513153 cgccgtggagggttagggttttgaggg 27513127



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                          
Query: 350      atgcagttcccttacgctggcgccttctcctcctcgcccgcgctctccctcgggctgg 407
                ||||||||||||| |||  | | |||| | |||||||| ||||||||||||| |||||
Sbjct: 27512910 atgcagttccctttcgccagtggcttcgcgtcctcgccggcgctctccctcgcgctgg 27512853

>dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0657H12
          Length = 142688

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                         
Query: 57     cgccgtggagggttagggttttgaggg 83
              |||||||||||||||||||||||||||
Sbjct: 104875 cgccgtggagggttagggttttgaggg 104849



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                        
Query: 350    atgcagttcccttacgctggcgccttctcctcctcgcccgcgctctccctcgggctgg 407
              ||||||||||||| |||  | | |||| | |||||||| ||||||||||||| |||||
Sbjct: 104632 atgcagttccctttcgccagtggcttcgcgtcctcgccggcgctctccctcgcgctgg 104575

>gb|AC150871.4| Bos taurus  BAC CH240-316E7 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 167244

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 25     tctccactcctcccttattct 45
              |||||||||||||||||||||
Sbjct: 112473 tctccactcctcccttattct 112453

>ref|XM_388037.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07861.1)
           partial mRNA
          Length = 669

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 372 ccttctcctcctcgcccgcgc 392
           |||||||||||||||||||||
Sbjct: 36  ccttctcctcctcgcccgcgc 56

>emb|X67250.1|RNCHIM R.norvegicus mRNA for n-chimaerin
          Length = 2309

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 229  gatagagacggtgaaaaggcg 249
            |||||||||||||||||||||
Sbjct: 1002 gatagagacggtgaaaaggcg 1022

>gb|AF183487.1| Treubaria schmidlei 28S ribosomal RNA gene, partial sequence
          Length = 2134

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 422 cgagacggcggcatcggcggg 442
           |||||||||||||||||||||
Sbjct: 508 cgagacggcggcatcggcggg 488

>ref|NM_032083.1| Rattus norvegicus chimerin (chimaerin) 1 (Chn1), mRNA
          Length = 2309

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 229  gatagagacggtgaaaaggcg 249
            |||||||||||||||||||||
Sbjct: 1002 gatagagacggtgaaaaggcg 1022

>gb|BC094519.1| Rattus norvegicus chimerin (chimaerin) 1, mRNA (cDNA clone MGC:105381
            IMAGE:7315609), complete cds
          Length = 2270

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 229  gatagagacggtgaaaaggcg 249
            |||||||||||||||||||||
Sbjct: 1051 gatagagacggtgaaaaggcg 1071

>ref|XM_579545.1| PREDICTED: Rattus norvegicus chimerin (chimaerin) 1 (Chn1), mRNA
          Length = 2267

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 229  gatagagacggtgaaaaggcg 249
            |||||||||||||||||||||
Sbjct: 993  gatagagacggtgaaaaggcg 1013

>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 212   tcctttttgggaccgaggata 232
             |||||||||||||||||||||
Sbjct: 91849 tcctttttgggaccgaggata 91869

>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 374     ttctcctcctcgcccgcgct 393
               ||||||||||||||||||||
Sbjct: 2934530 ttctcctcctcgcccgcgct 2934549

>ref|XM_479990.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2291

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 417 gcgggcgagacggcggcatcggcg 440
           ||||||||||||||||| ||||||
Sbjct: 99  gcgggcgagacggcggcgtcggcg 76

>gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 genomic sequence,
            complete sequence
          Length = 149758

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 61   gtggagggttagggttttga 80
            ||||||||||||||||||||
Sbjct: 2052 gtggagggttagggttttga 2071

>gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 genomic sequence,
            complete sequence
          Length = 162339

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 61   gtggagggttagggttttga 80
            ||||||||||||||||||||
Sbjct: 1907 gtggagggttagggttttga 1888

>gb|AF449176.1|F449176S01 Homo sapiens ARL6IP2 gene, exon 1
          Length = 783

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 1   tcgctcgctcgctccggcctcgcc 24
           |||||||||||||||| |||||||
Sbjct: 238 tcgctcgctcgctccgccctcgcc 215

>gb|DQ139273.1| Sus scrofa dopamine beta-hydroxylase (DBH) mRNA, partial cds
          Length = 1675

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                        
Query: 272  gtcgtgtctgctcctcccgggagacgtg 299
            |||||||||| |||||||||||||||||
Sbjct: 1267 gtcgtgtctg-tcctcccgggagacgtg 1293

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 61       gtggagggttagggttttga 80
                ||||||||||||||||||||
Sbjct: 16657790 gtggagggttagggttttga 16657771

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 417     gcgggcgagacggcggcatcggcg 440
               ||||||||||||||||| ||||||
Sbjct: 2102071 gcgggcgagacggcggcgtcggcg 2102048

>ref|XM_574182.1| PREDICTED: Rattus norvegicus similar to n-chimaerin (LOC498895),
           mRNA
          Length = 1426

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 229 gatagagacggtgaaaaggc 248
           ||||||||||||||||||||
Sbjct: 640 gatagagacggtgaaaaggc 659

>gb|AC016995.7| Homo sapiens BAC clone RP11-32C8 from 2, complete sequence
          Length = 153137

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 1     tcgctcgctcgctccggcctcgcc 24
             |||||||||||||||| |||||||
Sbjct: 36789 tcgctcgctcgctccgccctcgcc 36766

>dbj|AP003896.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1613_G04
          Length = 135357

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 417   gcgggcgagacggcggcatcggcg 440
             ||||||||||||||||| ||||||
Sbjct: 95601 gcgggcgagacggcggcgtcggcg 95578

>dbj|AK120060.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001G01, full
           insert sequence
          Length = 2290

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 417 gcgggcgagacggcggcatcggcg 440
           ||||||||||||||||| ||||||
Sbjct: 99  gcgggcgagacggcggcgtcggcg 76

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 61       gtggagggttagggttttga 80
                ||||||||||||||||||||
Sbjct: 16666431 gtggagggttagggttttga 16666412

>dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, complete sequence
          Length = 949626

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     ctcgtggtagtagaaagagg 110
              ||||||||||||||||||||
Sbjct: 389539 ctcgtggtagtagaaagagg 389520


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,723,535
Number of Sequences: 3902068
Number of extensions: 2723535
Number of successful extensions: 59513
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 59172
Number of HSP's gapped (non-prelim): 342
length of query: 470
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 448
effective length of database: 17,147,199,772
effective search space: 7681945497856
effective search space used: 7681945497856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)