ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl53h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1WOX9_ARATH (Q6X7J4) WUSCHEL-related homeobox 9 29 2.4
2ALYS_ENTFA (P37710) Autolysin precursor (EC 3.2.1.-) (Peptidogly... 28 5.4
3RL15_BRUSU (Q8G090) 50S ribosomal protein L15 28 5.4
4RL15_BRUME (Q8YHM1) 50S ribosomal protein L15 28 5.4
5RL15_BRUAB (Q57CS7) 50S ribosomal protein L15 28 5.4
6NCOA6_MOUSE (Q9JL19) Nuclear receptor coactivator 6 (Amplified i... 28 7.0
7NCOA6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified i... 28 7.0
8MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, trac... 27 9.2

>WOX9_ARATH (Q6X7J4) WUSCHEL-related homeobox 9|
          Length = 378

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 264 KHPPPQNRPQGTQQPRTSDSXXXXXXXAESTRETK 160
           KH  PQ +PQ   QP  S S       ++ST+  K
Sbjct: 123 KHSLPQTQPQPQPQPSASSSSSSSSSSSKSTKPRK 157



to top

>ALYS_ENTFA (P37710) Autolysin precursor (EC 3.2.1.-) (Peptidoglycan hydrolase)|
           (Beta-glycosidase)
          Length = 737

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 258 PPPQNRPQGTQQPRTSDSXXXXXXXAESTRETKETISDE 142
           P  +  P  T+QP T+DS        ES++ET  T S E
Sbjct: 77  PTTETTPGTTEQP-TTDSSTTTESTTESSKETPTTPSTE 114



to top

>RL15_BRUSU (Q8G090) 50S ribosomal protein L15|
          Length = 156

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 240 VYFEVAGVCVPAMEEPNAGGGAVAAPEVIAD 332
           V FEVAG    A+E+    GG++  PE  A+
Sbjct: 126 VAFEVAGASKAAVEKIEKAGGSIKLPEAAAE 156



to top

>RL15_BRUME (Q8YHM1) 50S ribosomal protein L15|
          Length = 156

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 240 VYFEVAGVCVPAMEEPNAGGGAVAAPEVIAD 332
           V FEVAG    A+E+    GG++  PE  A+
Sbjct: 126 VAFEVAGASKAAVEKIEKAGGSIKLPEAAAE 156



to top

>RL15_BRUAB (Q57CS7) 50S ribosomal protein L15|
          Length = 156

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 240 VYFEVAGVCVPAMEEPNAGGGAVAAPEVIAD 332
           V FEVAG    A+E+    GG++  PE  A+
Sbjct: 126 VAFEVAGASKAAVEKIEKAGGSIKLPEAAAE 156



to top

>NCOA6_MOUSE (Q9JL19) Nuclear receptor coactivator 6 (Amplified in breast cancer|
           protein 3) (Cancer-amplified transcriptional coactivator
           ASC-2) (Activating signal cointegrator 2) (ASC-2)
           (Peroxisome proliferator-activated receptor-interacting
           protein) (P
          Length = 2067

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 3   PSLSALQNPSHPPHQKPY 56
           PSL+ +Q PSHPP   P+
Sbjct: 365 PSLATVQTPSHPPPPYPF 382



to top

>NCOA6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified in breast cancer|
           protein 3) (Cancer-amplified transcriptional coactivator
           ASC-2) (Activating signal cointegrator 2) (ASC-2)
           (Peroxisome proliferator-activated receptor-interacting
           protein) (P
          Length = 2063

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 3   PSLSALQNPSHPPHQKPY 56
           PSL+ +Q PSHPP   P+
Sbjct: 361 PSLATVQTPSHPPPPYPF 378



to top

>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
           (High molecular weight salivary mucin MG1) (Sublingual
           gland mucin)
          Length = 5703

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 255 AGVCVPAMEEPNAGGGAVAAP-EVIAD 332
           AG CVPA E P    G V AP EV+ D
Sbjct: 744 AGACVPAQECPCYAHGTVLAPGEVVHD 770


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,269,816
Number of Sequences: 219361
Number of extensions: 317441
Number of successful extensions: 1442
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top