ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl53h06 |
|---|---|
| Clone Library Name | barley_pub |
>POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1874 Score = 34.3 bits (77), Expect = 0.16 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = -1 Query: 205 PPRPNAISPTSTCTGPPRCTRPVYISSIHQRF 110 PP PN +PTS+ T PP P+ SIH F Sbjct: 694 PPAPNKPTPTSSSTTPPSPNLPLQFGSIHSPF 725
>VGP3_EBV (P03200) Envelope glycoprotein GP340/GP220 (Membrane antigen) (MA)| Length = 907 Score = 30.8 bits (68), Expect = 1.8 Identities = 30/114 (26%), Positives = 42/114 (36%), Gaps = 17/114 (14%) Frame = -1 Query: 430 SPKPTSAR*SLTSVFLLDVDTSSGSDLLFEV-------GSTGKTVD--DVIIQAPXXXXX 278 +P+ T+ +L + D +T++G V STG TV DV P Sbjct: 424 APESTTTSPTLNTTGFADPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSPTPAGTTS 483 Query: 277 XXXXXXXXVHNDEDGDEGRLPS-------IFPPRPNAISPTSTCTGP-PRCTRP 140 ++G E + P + P PNA SPT T P P T P Sbjct: 484 GASPVTPSPSPWDNGTESKAPDMTSSTSPVTTPTPNATSPTPAVTTPTPNATSP 537
>CSPG2_BOVIN (P81282) Versican core protein precursor (Large fibroblast| proteoglycan) (Chondroitin sulfate proteoglycan core protein 2) (PG-M) (Glial hyaluronate-binding protein) (GHAP) Length = 3381 Score = 30.4 bits (67), Expect = 2.3 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = +3 Query: 294 GAWMMTSSTVFPVEPTSNKRSEPL--EVSTSNKKTEVKDQRAEVGFGEPRRR 443 GAW TVFP EPT S + EV+ + +T ++ +E+ GEP R Sbjct: 1861 GAWSPNVETVFPFEPTEQVLSTAVDREVAETISQTSKENLVSEIS-GEPTHR 1911
>CRDL1_MOUSE (Q920C1) Chordin-like protein 1 precursor (Neuralin) (Ventroptin)| Length = 447 Score = 30.4 bits (67), Expect = 2.3 Identities = 20/57 (35%), Positives = 26/57 (45%) Frame = +2 Query: 14 PPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADINRPRAAGWSCTCASRT 184 PPP G P+ PG R RG + SQQ+S +V + IN G C +T Sbjct: 208 PPPNRQAGGLPRFPGSRSHRGAVID--SQQASGTIV-QIVINNKHKHGQVCVSNGKT 261
>KCNC4_RAT (Q63734) Potassium voltage-gated channel subfamily C member 4| (Voltage-gated potassium channel subunit Kv3.4) (Raw3) Length = 625 Score = 30.0 bits (66), Expect = 3.1 Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Frame = -2 Query: 126 RSTKGSELCWLAASCHTPRAPRRPGS--WGAAPSGSRGGGEGIE 1 R+ G+ L WLA P RP S GA SGS GGG G E Sbjct: 55 RTLPGTRLAWLA----DPDGGGRPESDGGGAGSSGSSGGGGGCE 94
>LIPA3_MOUSE (P60469) Liprin-alpha-3 (Protein tyrosine phosphatase receptor type| f polypeptide-interacting protein alpha-3) (PTPRF-interacting protein alpha-3) Length = 1043 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +2 Query: 2 SIPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSE 112 ++PS P DP GA GR G RG W A + S + Sbjct: 372 TLPSGAPLDPYGAG---SGRAGKRGRWSGAKDESSKD 405
>CSR2B_HUMAN (Q9H8E8) Cysteine-rich protein 2-binding protein (CSRP2-binding| protein) (CRP2BP) (CRP2-binding partner) Length = 782 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +2 Query: 14 PPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADIN 139 PPP + + P + GR+ RG Q +S E DR DI+ Sbjct: 386 PPPAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDID 427
>LIPA3_RAT (Q91Z79) Liprin-alpha-3 (Protein tyrosine phosphatase receptor type| f polypeptide-interacting protein alpha-3) (PTPRF-interacting protein alpha-3) Length = 1192 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +2 Query: 2 SIPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSE 112 ++PS P DP GA GR G RG W A + S + Sbjct: 522 TLPSGAPLDPYGAG---SGRAGKRGRWSGAKDESSKD 555
>VCAP_EBV (P03226) Major capsid protein (MCP)| Length = 1381 Score = 29.6 bits (65), Expect = 4.0 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Frame = +2 Query: 209 DGRQAALVAVFVVVHDDHRRGVCGALRGGRLDDDVVHRLPGR-ADFKQEVGATRGI 373 DGR+ + F+VV + H+ + + LD +++H +P ++ + VGA + + Sbjct: 106 DGRRPSKQRTFIVVKNCHKHHISTEMELSMLDLEILHSIPETPVEYAEYVGAVKTV 161
>VGP3_EBVP3 (P68344) Envelope glycoprotein GP340 (Membrane antigen) (MA)| Length = 886 Score = 29.6 bits (65), Expect = 4.0 Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 10/75 (13%) Frame = -1 Query: 334 STGKTVD--DVIIQAPXXXXXXXXXXXXXVHNDEDGDEGRLP-------SIFPPRPNAIS 182 STG TV DV P ++G E + P ++ P PNA S Sbjct: 463 STGPTVSTADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATS 522 Query: 181 PTSTCTGP-PRCTRP 140 PT T P P T P Sbjct: 523 PTPAVTTPTPNATSP 537
>VGP3_EBVA8 (P68343) Envelope glycoprotein GP340 (Membrane antigen) (MA)| Length = 886 Score = 29.6 bits (65), Expect = 4.0 Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 10/75 (13%) Frame = -1 Query: 334 STGKTVD--DVIIQAPXXXXXXXXXXXXXVHNDEDGDEGRLP-------SIFPPRPNAIS 182 STG TV DV P ++G E + P ++ P PNA S Sbjct: 463 STGPTVSTADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATS 522 Query: 181 PTSTCTGP-PRCTRP 140 PT T P P T P Sbjct: 523 PTPAVTTPTPNATSP 537
>MINC_XANAC (Q8PN47) Probable septum site-determining protein minC| Length = 249 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/45 (33%), Positives = 19/45 (42%) Frame = +2 Query: 2 SIPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADI 136 S P PPP P A P P R A G Q A + + + D+ Sbjct: 119 SPPPPPPPPPARAEPAPPAARPAPGRMQRTAVRSGQQLYAENCDL 163
>Y1673_SYNY3 (P74261) Hypothetical tRNA/rRNA methyltransferase slr1673 (EC| 2.1.1.-) Length = 274 Score = 29.3 bits (64), Expect = 5.2 Identities = 17/51 (33%), Positives = 25/51 (49%) Frame = -2 Query: 213 PSSRLGRMPSVLLAHVQDHPAARGLFISARSTKGSELCWLAASCHTPRAPR 61 P +RLG ++L +QD P G + + G E WL A C P +P+ Sbjct: 117 PHARLG----LVLERLQD-PGNLGTILRTAAATGVEGIWLTADCVDPTSPK 162
>CTDP1_HUMAN (Q9Y5B0) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (TFIIF-associating CTD phosphatase) Length = 961 Score = 29.3 bits (64), Expect = 5.2 Identities = 20/48 (41%), Positives = 23/48 (47%) Frame = +2 Query: 2 SIPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADINRP 145 S PSPP RDP G Q PG + G+ + A SE R D RP Sbjct: 353 SEPSPPVRDPEGVT-QAPGVEPSNGLEKPARELNGSEAATPR-DSPRP 398
>TEGU_EBV (P03186) Large tegument protein| Length = 3149 Score = 28.9 bits (63), Expect = 6.8 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +2 Query: 8 PSPPPRDPLGAAPQLPGRRGARG 76 PS PPR GAAPQ P R+ G Sbjct: 397 PSTPPRASSGAAPQTPKRKKGLG 419
>ARLY_PSEAE (P50987) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)| (ASAL) Length = 464 Score = 28.9 bits (63), Expect = 6.8 Identities = 18/44 (40%), Positives = 22/44 (50%) Frame = +2 Query: 95 SQQSSEPLVDRADINRPRAAGWSCTCASRTDGIRPRREDGRQAA 226 +Q+ EPL D AD R + A IRPRRE R+AA Sbjct: 326 NQEDKEPLFDAADTLRDSLRAF----ADMVPAIRPRREIMREAA 365
>XKR6_RAT (Q5GH57) XK-related protein 6| Length = 638 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +2 Query: 5 IPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVD 124 IP PP +P+ APQ PG RG + A ++Q + D Sbjct: 517 IPLPPDVEPM--APQTPGYRGTQVTPTRAVTEQQEDLTAD 554
>T22D2_HUMAN (O75157) TSC22 domain family protein 2 (TSC22-related-inducible| leucine zipper protein 4) Length = 780 Score = 28.9 bits (63), Expect = 6.8 Identities = 21/54 (38%), Positives = 26/54 (48%) Frame = -2 Query: 177 LAHVQDHPAARGLFISARSTKGSELCWLAASCHTPRAPRRPGSWGAAPSGSRGG 16 LA PA G +SARS G+ LAA+ + AP PG G +GS G Sbjct: 94 LAAAAAAPANGGGVVSARSVSGALASTLAAAATSAPAPGAPG--GPQLAGSSAG 145
>CENG1_MOUSE (Q3UHD9) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) Length = 1186 Score = 28.9 bits (63), Expect = 6.8 Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 8/74 (10%) Frame = +2 Query: 2 SIPSPPPRDPLGAAPQLPGRRGA--------RGVWQEAASQQSSEPLVDRADINRPRAAG 157 S+P PPP P AA PG RG+ RG E ++ E L R D A Sbjct: 26 SVPPPPP-SPSAAAAGAPGARGSEPRDPGSPRG--SEEPGKKRHERLFHRQD------AL 76 Query: 158 WSCTCASRTDGIRP 199 W T ++ T G P Sbjct: 77 WISTSSAGTGGAEP 90
>VGLM_HANTV (P08668) Envelope polyprotein precursor (M polyprotein) [Contains:| Glycoprotein G1; Glycoprotein G2] Length = 1135 Score = 28.9 bits (63), Expect = 6.8 Identities = 14/34 (41%), Positives = 15/34 (44%) Frame = -2 Query: 108 ELCWLAASCHTPRAPRRPGSWGAAPSGSRGGGEG 7 E W A CH R + SWG PS G G G Sbjct: 743 EYPWHTAKCHYERDYQYETSWGCNPSDCPGVGTG 776
>VGLM_HANTL (P16853) Envelope polyprotein precursor (M polyprotein) [Contains:| Glycoprotein G1; Glycoprotein G2] Length = 1135 Score = 28.9 bits (63), Expect = 6.8 Identities = 14/34 (41%), Positives = 15/34 (44%) Frame = -2 Query: 108 ELCWLAASCHTPRAPRRPGSWGAAPSGSRGGGEG 7 E W A CH R + SWG PS G G G Sbjct: 743 EYPWHTAKCHYERDYQYETSWGCNPSDCPGVGTG 776
>XKR6_HUMAN (Q5GH73) XK-related protein 6| Length = 641 Score = 28.9 bits (63), Expect = 6.8 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +2 Query: 5 IPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVD 124 IP PP +P+ AP++PG RG + A ++Q + D Sbjct: 520 IPLPPDVEPM--APEIPGYRGTQVTPTRAVTEQQEDLTAD 557
>VGLM_HANTH (P16493) Envelope polyprotein precursor (M polyprotein) [Contains:| Glycoprotein G1; Glycoprotein G2] Length = 1134 Score = 28.9 bits (63), Expect = 6.8 Identities = 14/34 (41%), Positives = 15/34 (44%) Frame = -2 Query: 108 ELCWLAASCHTPRAPRRPGSWGAAPSGSRGGGEG 7 E W A CH R + SWG PS G G G Sbjct: 742 EYPWHTAKCHYERDYQYETSWGCNPSDCPGCGTG 775
>PROA_DESPS (Q6AK09) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 418 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = +2 Query: 224 ALVAVFVVVHDDHRRGVCGALRGGRLDDDVV-HRLPGRADFKQEVG 358 A VA V+ R GVC AL G + +D+V LPG A E+G Sbjct: 241 AKVAPIVINAKTQRPGVCNALEGILIHEDIVADVLPGLATELAELG 286
>KCNC4_MOUSE (Q8R1C0) Potassium voltage-gated channel subfamily C member 4| (Voltage-gated potassium channel subunit Kv3.4) Length = 628 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Frame = -2 Query: 126 RSTKGSELCWLAASCHTPRAPRRPGS--WGAAPSGSRGGGEG 7 R+ G+ L WLA P RP S GA SGS GGG G Sbjct: 55 RTLPGTRLAWLA----DPDGGGRPESDGGGAGSSGSSGGGGG 92
>CMTA2_HUMAN (O94983) Calmodulin-binding transcription activator 2| Length = 1202 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/24 (54%), Positives = 13/24 (54%) Frame = +2 Query: 5 IPSPPPRDPLGAAPQLPGRRGARG 76 IPSPPP P AP P R RG Sbjct: 462 IPSPPPSPPPSPAPLEPSSRVGRG 485
>FA8A1_HUMAN (Q9UBU6) Protein FAM8A1 (Autosomal highly conserved protein)| Length = 413 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = +2 Query: 14 PPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEP 115 P PRD A PQ PGR A G+ AA+ + P Sbjct: 37 PCPRDDPQAEPQAPGRPTAPGLAAAAAADKLEPP 70
>EBNA2_EBV (P12978) Epstein-Barr nuclear antigen 2 (EBV nuclear antigen 2)| (EBNA-2) Length = 487 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Frame = -1 Query: 217 PSIFPPRPNAISPT--STCTGPPRCTRP 140 P + PPRP +P +T T PPR TRP Sbjct: 193 PLMMPPRPTPPTPLPPATLTVPPRPTRP 220
>EBNA2_EBVG (Q3KSV2) Epstein-Barr nuclear antigen 2 (EBV nuclear antigen 2)| (EBNA-2) (EBNA2) Length = 451 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Frame = -1 Query: 217 PSIFPPRPNAISPT--STCTGPPRCTRP 140 P + PPRP +P +T T PPR TRP Sbjct: 159 PLMMPPRPTPPTPLPPATLTVPPRPTRP 186
>GCSP_MYCPA (Q73ZQ6) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)| (Glycine decarboxylase) (Glycine cleavage system P-protein) Length = 941 Score = 28.5 bits (62), Expect = 8.9 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Frame = +2 Query: 200 RREDGRQAALVAVF--VVVHDDHRRGVCGALRGGRLDDDVVHRLPGRADFKQEVGATRGI 373 RR G A+ A VVHD R D V+ R+PGRAD RGI Sbjct: 362 RRVHGHAEAIAAALGTAVVHD-------------RYFDTVLARVPGRADEVIAAAKARGI 408 Query: 374 NI 379 N+ Sbjct: 409 NL 410
>CRDL1_HUMAN (Q9BU40) Chordin-like protein 1 precursor (Neuralin) (Ventroptin)| Length = 450 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/57 (33%), Positives = 25/57 (43%) Frame = +2 Query: 14 PPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADINRPRAAGWSCTCASRT 184 PPP G + PG R RG + SQQ+S +V + IN G C +T Sbjct: 207 PPPSRQAGGLSRFPGARSHRGALMD--SQQASGTIV-QIVINNKHKHGQVCVSNGKT 260
>VIT_BOMMO (Q27309) Vitellogenin precursor [Contains: Vitellin light chain (VL);| Vitellin light chain rare isoform; Vitellin heavy chain rare isoform; Vitellin heavy chain (VH)] Length = 1782 Score = 25.4 bits (54), Expect(2) = 9.9 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 3/26 (11%) Frame = +2 Query: 239 FVVVHDDHR---RGVCGALRGGRLDD 307 FVV D+R RG+CG + G + DD Sbjct: 1587 FVVFTQDYRNSTRGICGRMSGEQRDD 1612 Score = 21.2 bits (43), Expect(2) = 9.9 Identities = 9/34 (26%), Positives = 15/34 (44%) Frame = +3 Query: 21 LEIRSEPRPSSPAGEVRAVCGRKQQASKALNLWW 122 LEI +P A +V+ K+ L ++W Sbjct: 1517 LEIEIQPASGDSAYQVKVTTNTKKITDDDLTMYW 1550 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,317,481 Number of Sequences: 219361 Number of extensions: 1334535 Number of successful extensions: 6277 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 5490 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6251 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
