ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl53h03 |
|---|---|
| Clone Library Name | barley_pub |
>AMPE_HUMAN (Q07075) Glutamyl aminopeptidase (EC 3.4.11.7) (EAP)| (Aminopeptidase A) (APA) (Differentiation antigen gp160) (CD249 antigen) Length = 957 Score = 47.0 bits (110), Expect = 2e-05 Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 3/79 (3%) Frame = +3 Query: 159 PSTPPLQ---ICPPTMAESPEQFRGQSRLPRFAEPLRYDLVLRPDLAACTFSGXXXXXXX 329 PS PP Q ICP + ES + RLP F P+ YDL ++P L T++G Sbjct: 67 PSGPPAQDQDICPASEDESGQW--KNFRLPDFVNPVHYDLHVKPLLEEDTYTGTVSISIN 124 Query: 330 XXXPTRFLVLNAAELAVDR 386 PTR+L L+ E + R Sbjct: 125 LSAPTRYLWLHLRETRITR 143
>ARTS1_RAT (Q9JJ22) Adipocyte-derived leucine aminopeptidase precursor (EC| 3.4.11.-) (A-LAP) (ARTS-1) (Aminopeptidase PILS) (Puromycin-insensitive leucyl-specific aminopeptidase) (PILS-AP) Length = 930 Score = 42.0 bits (97), Expect = 7e-04 Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 8/94 (8%) Frame = +3 Query: 183 CPPTMAESPEQFRGQS------RLPRFAEPLRYDLVLRPDLAACTFSGXXXXXXXXXXPT 344 C + SP+ G S RLP + P+ YDL++ +L+ TF G PT Sbjct: 20 CQNSDTASPKASNGASFPWNNMRLPEYITPIHYDLMIHANLSTLTFWGKTEVEITVSQPT 79 Query: 345 RFLVLNAAELAVDRSSIR--FQDWAPTEVVQFEE 440 +++++ +L + ++++R ++ P E ++ E Sbjct: 80 STIIMHSHQLQISKATLRRGAEEMLPEEPLKLME 113
>AMPE_PIG (Q95334) Glutamyl aminopeptidase (EC 3.4.11.7) (EAP)| (Aminopeptidase A) (APA) Length = 942 Score = 41.6 bits (96), Expect = 0.001 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 2/93 (2%) Frame = +3 Query: 147 NLPRPSTPPLQ--ICPPTMAESPEQFRGQSRLPRFAEPLRYDLVLRPDLAACTFSGXXXX 320 +LP S+PP +CP + ES RLP F P+ YDL ++P L T++G Sbjct: 54 HLPPTSSPPQDQGVCPASEDESGNW--RDFRLPDFINPVHYDLQVKPLLEQDTYTGTVNI 111 Query: 321 XXXXXXPTRFLVLNAAELAVDRSSIRFQDWAPT 419 PT+ L L+ E + + + W P+ Sbjct: 112 SINVTSPTQHLWLHLRETRITQLPVL---WRPS 141
>ARTS1_HUMAN (Q9NZ08) Adipocyte-derived leucine aminopeptidase precursor (EC| 3.4.11.-) (A-LAP) (ARTS-1) (Aminopeptidase PILS) (Puromycin-insensitive leucyl-specific aminopeptidase) (PILS-AP) (Type 1 tumor necrosis factor receptor shedding aminopeptidase r Length = 929 Score = 40.8 bits (94), Expect = 0.002 Identities = 17/56 (30%), Positives = 30/56 (53%) Frame = +3 Query: 231 RLPRFAEPLRYDLVLRPDLAACTFSGXXXXXXXXXXPTRFLVLNAAELAVDRSSIR 398 RLP + P+ YDL++ +L TF G PT ++L++ L + R+++R Sbjct: 41 RLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRATLR 96
>TRHDE_MOUSE (Q8K093) Thyrotropin-releasing hormone degrading ectoenzyme (EC| 3.4.19.6) (TRH-degrading ectoenzyme) (TRH-DE) (TRH-specific aminopeptidase) (Thyroliberinase) (Pyroglutamyl-peptidase II) (PAP-II) Length = 1025 Score = 40.0 bits (92), Expect = 0.003 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%) Frame = +3 Query: 159 PSTPPLQICPPTMAESPEQFRG--QSRLPRFAEPLRYDLVLRPDLAACTFSGXXXXXXXX 332 P TP Q P E EQ++ Q RL +PL Y+L+L + TFSG Sbjct: 118 PGTPSAQ---PPSEEEREQWQPWTQLRLSGHLKPLHYNLMLTAFMENFTFSGEVNVEIAC 174 Query: 333 XXPTRFLVLNAAELAVDRSSI 395 TR++VL+A+ +AV++ + Sbjct: 175 RNATRYVVLHASRVAVEKVQV 195
>ARTS1_MOUSE (Q9EQH2) Adipocyte-derived leucine aminopeptidase precursor (EC| 3.4.11.-) (A-LAP) (ARTS-1) (Aminopeptidase PILS) (Puromycin-insensitive leucyl-specific aminopeptidase) (PILS-AP) (VEGF-induced aminopeptidase) Length = 930 Score = 39.3 bits (90), Expect = 0.005 Identities = 15/56 (26%), Positives = 31/56 (55%) Frame = +3 Query: 231 RLPRFAEPLRYDLVLRPDLAACTFSGXXXXXXXXXXPTRFLVLNAAELAVDRSSIR 398 RLP + P+ YDL++ +L+ TF G PT +++++ L + ++++R Sbjct: 42 RLPEYMTPIHYDLMIHANLSTLTFWGKTEVEIIASRPTSTIIMHSHHLQISKATLR 97
>PSA_HUMAN (P55786) Puromycin-sensitive aminopeptidase (EC 3.4.11.-) (PSA)| Length = 919 Score = 38.9 bits (89), Expect = 0.006 Identities = 22/66 (33%), Positives = 32/66 (48%) Frame = +3 Query: 195 MAESPEQFRGQSRLPRFAEPLRYDLVLRPDLAACTFSGXXXXXXXXXXPTRFLVLNAAEL 374 +A PE+ R RLP P+ Y L L+PDL TF G T +V+N A++ Sbjct: 42 LAAMPEK-RPFERLPADVSPINYSLCLKPDLLDFTFEGKLEAAAQVRQATNQIVMNCADI 100 Query: 375 AVDRSS 392 + +S Sbjct: 101 DIITAS 106
>AMPE_MOUSE (P16406) Glutamyl aminopeptidase (EC 3.4.11.7) (EAP)| (Aminopeptidase A) (APA) (BP-1/6C3 antigen) Length = 945 Score = 38.9 bits (89), Expect = 0.006 Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 11/95 (11%) Frame = +3 Query: 135 CVQKNLPRPSTPPLQ-----------ICPPTMAESPEQFRGQSRLPRFAEPLRYDLVLRP 281 C Q P PS PP + +CP + ES E RLP F P+ YDL ++ Sbjct: 43 CEQDTTPAPSQPPPEASTALPPQDQNVCPDSEDESGEW--KNFRLPDFINPVHYDLEVKA 100 Query: 282 DLAACTFSGXXXXXXXXXXPTRFLVLNAAELAVDR 386 + ++G PTR L L+ E + + Sbjct: 101 LMEEDRYTGIVTISVNLSKPTRDLWLHIRETKITK 135
>PSA_MOUSE (Q11011) Puromycin-sensitive aminopeptidase (EC 3.4.11.-) (PSA)| Length = 920 Score = 38.9 bits (89), Expect = 0.006 Identities = 22/66 (33%), Positives = 32/66 (48%) Frame = +3 Query: 195 MAESPEQFRGQSRLPRFAEPLRYDLVLRPDLAACTFSGXXXXXXXXXXPTRFLVLNAAEL 374 +A PE+ R RLP P+ Y L L+PDL TF G T +V+N A++ Sbjct: 43 LAAMPEK-RPFERLPAEVSPINYSLCLKPDLLDFTFEGKLEAAAQVRQATNQIVMNCADI 101 Query: 375 AVDRSS 392 + +S Sbjct: 102 DIITAS 107
>TRHDE_RAT (Q10836) Thyrotropin-releasing hormone degrading ectoenzyme (EC| 3.4.19.6) (TRH-degrading ectoenzyme) (TRH-DE) (TRH-specific aminopeptidase) (Thyroliberinase) (Pyroglutamyl-peptidase II) (PAP-II) Length = 1025 Score = 37.7 bits (86), Expect = 0.014 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Frame = +3 Query: 141 QKNLPRPSTPPLQICPPTMAESPEQFRG--QSRLPRFAEPLRYDLVLRPDLAACTFSGXX 314 Q+ + T P E EQ++ Q RL +PL Y+L+L + TFSG Sbjct: 109 QREIGEVGTAGTPSAHPPSEEEQEQWQPWTQLRLSGHLKPLHYNLMLTAFMENFTFSGEV 168 Query: 315 XXXXXXXXPTRFLVLNAAELAVDRSSI 395 TR++VL+A+ +AV++ + Sbjct: 169 NVEIACQNATRYVVLHASRVAVEKVQV 195
>TRHDE_HUMAN (Q9UKU6) Thyrotropin-releasing hormone degrading ectoenzyme (EC| 3.4.19.6) (TRH-degrading ectoenzyme) (TRH-DE) (TRH-specific aminopeptidase) (Thyroliberinase) (Pyroglutamyl-peptidase II) (PAP-II) Length = 1024 Score = 36.2 bits (82), Expect = 0.040 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%) Frame = +3 Query: 159 PSTPPLQICPPTMAE-SPEQFRGQSRLPRFAEPLRYDLVLRPDLAACTFSGXXXXXXXXX 335 P T Q PP+ E P + Q RL +PL Y+L+L + TFSG Sbjct: 117 PGTTSAQ--PPSEEEREPWEPWTQLRLSGHLKPLHYNLMLTAFMENFTFSGEVNVEIACR 174 Query: 336 XPTRFLVLNAAELAVDR 386 TR++VL+A+ +AV++ Sbjct: 175 NATRYVVLHASRVAVEK 191
>LCAP_RAT (P97629) Leucyl-cystinyl aminopeptidase (EC 3.4.11.3) (Cystinyl| aminopeptidase) (Oxytocinase) (OTase) (Insulin-regulated membrane aminopeptidase) (Insulin-responsive aminopeptidase) (IRAP) (Placental leucine aminopeptidase) (P-LAP) (Vesicle prot Length = 1025 Score = 35.0 bits (79), Expect = 0.090 Identities = 22/71 (30%), Positives = 33/71 (46%) Frame = +3 Query: 225 QSRLPRFAEPLRYDLVLRPDLAACTFSGXXXXXXXXXXPTRFLVLNAAELAVDRSSIRFQ 404 Q RLP P RY+L L P+L + TF G TR ++L++ + SS+ F Sbjct: 165 QIRLPTAIIPQRYELSLHPNLTSMTFRGSVTISLQALQDTRDIILHSTGHNI--SSVTFM 222 Query: 405 DWAPTEVVQFE 437 ++ Q E Sbjct: 223 SAVSSQEKQVE 233
>LCAP_HUMAN (Q9UIQ6) Leucyl-cystinyl aminopeptidase (EC 3.4.11.3) (Cystinyl| aminopeptidase) (Oxytocinase) (OTase) (Insulin-regulated membrane aminopeptidase) (Insulin-responsive aminopeptidase) (IRAP) (Placental leucine aminopeptidase) (P-LAP) Length = 1025 Score = 33.9 bits (76), Expect = 0.20 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = +3 Query: 225 QSRLPRFAEPLRYDLVLRPDLAACTFSGXXXXXXXXXXPTRFLVLNAAELAVDR 386 Q RLP PLRY+L L P+L + TF G T ++L++ + R Sbjct: 165 QIRLPTAVVPLRYELSLHPNLTSMTFRGSVTISVQALQVTWNIILHSTGHNISR 218
>AMPE_RAT (P50123) Glutamyl aminopeptidase (EC 3.4.11.7) (EAP)| (Aminopeptidase A) (APA) Length = 945 Score = 33.1 bits (74), Expect = 0.34 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 11/95 (11%) Frame = +3 Query: 135 CVQKNLPRPSTPP-----------LQICPPTMAESPEQFRGQSRLPRFAEPLRYDLVLRP 281 C P PS PP +CP + ES E RLP F +P+ YDL ++ Sbjct: 43 CEPGTTPAPSNPPPHTSTALPPQDQNVCPDSDDESGEW--KNFRLPDFIQPVHYDLEVKV 100 Query: 282 DLAACTFSGXXXXXXXXXXPTRFLVLNAAELAVDR 386 + ++G TR L L+ E + + Sbjct: 101 LMEEDRYTGIVSISVNLSKDTRDLWLHIRETRITK 135
>APE1_SCHPO (Q9USX1) Aminopeptidase 1 (EC 3.4.11.-) (Aminopeptidase I)| Length = 882 Score = 32.7 bits (73), Expect = 0.45 Identities = 16/59 (27%), Positives = 27/59 (45%) Frame = +3 Query: 204 SPEQFRGQSRLPRFAEPLRYDLVLRPDLAACTFSGXXXXXXXXXXPTRFLVLNAAELAV 380 S E + ++ LP+ +P+ YDL L PDL T+ G + + L+ L + Sbjct: 10 SKEDDKNRNLLPKNVKPIHYDLSLYPDLETFTYGGKVVVTLDVLEDSNSITLHGINLRI 68
>PDE4A_HUMAN (P27815) cAMP-specific 3',5'-cyclic phosphodiesterase 4A (EC| 3.1.4.17) (DPDE2) (PDE46) Length = 886 Score = 30.8 bits (68), Expect = 1.7 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 6/46 (13%) Frame = +3 Query: 84 TPFTNIYAQNRAVRRSYCVQKNLPRPSTP------PLQICPPTMAE 203 TPF + A R+VR ++ + N+P PS P +C T++E Sbjct: 179 TPFAQVLASLRSVRSNFSLLTNVPVPSNKRSPLGGPTPVCKATLSE 224
>PDE4A_RAT (P54748) cAMP-specific 3',5'-cyclic phosphodiesterase 4A (EC| 3.1.4.17) (DPDE2) Length = 844 Score = 30.4 bits (67), Expect = 2.2 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 6/46 (13%) Frame = +3 Query: 84 TPFTNIYAQNRAVRRSYCVQKNLPRPSTP------PLQICPPTMAE 203 TPF + A R+VR ++ + N+P PS P +C T++E Sbjct: 174 TPFAQVLASLRSVRSNFSLLTNVPIPSNKRSPLGGPPSVCKATLSE 219
>APE2_YEAST (P32454) Aminopeptidase 2 (EC 3.4.11.-) (Aminopeptidase II) (AP-II)| (YscII) Length = 844 Score = 30.4 bits (67), Expect = 2.2 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Frame = +3 Query: 234 LPRFAEPLRYDLVLRPDLAACTFSGXXXXXXXXXXPT-RFLVLNAAELAVDRSSIRFQDW 410 LP PL YDL + PD F G P + LN + D S + D Sbjct: 11 LPDNVVPLHYDLTVEPDFKTFKFEGSVKIELKINNPAIDTVTLNTVD--TDIHSAKIGDV 68 Query: 411 APTEVVQFEEDEI 449 +E++ EE ++ Sbjct: 69 TSSEIISEEEQQV 81
>CLD12_PONPY (Q5R9K1) Claudin-12| Length = 244 Score = 30.4 bits (67), Expect = 2.2 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +3 Query: 132 YCVQKNLPRPSTPPLQICPPTMAESPEQFRGQSRL 236 YC K+LP P PL PP+M + + +SRL Sbjct: 196 YCTCKSLPSPFWQPLYSHPPSMHTYSQPYSARSRL 230
>CLD12_HUMAN (P56749) Claudin-12| Length = 244 Score = 30.4 bits (67), Expect = 2.2 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +3 Query: 132 YCVQKNLPRPSTPPLQICPPTMAESPEQFRGQSRL 236 YC K+LP P PL PP+M + + +SRL Sbjct: 196 YCTCKSLPSPFWQPLYSHPPSMHTYSQPYSARSRL 230
>RUM1_SCHPO (P40380) Protein rum1 (p25-rum1)| Length = 230 Score = 29.6 bits (65), Expect = 3.8 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%) Frame = +3 Query: 159 PSTPPLQ-ICPPTMAESPEQFRG 224 PSTPP++ +C P+ ESP F+G Sbjct: 3 PSTPPMRGLCTPSTPESPGSFKG 25
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 29.6 bits (65), Expect = 3.8 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = +3 Query: 150 LPRPSTPPLQICPPT--MAESPEQFRGQSRLPRFAEPLR 260 +PR +PP ++ PP SP + R +SR PR P+R Sbjct: 224 MPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVR 262
>PDE4A_MOUSE (O89084) cAMP-dependent 3',5'-cyclic phosphodiesterase 4A (EC| 3.1.4.17) Length = 844 Score = 29.3 bits (64), Expect = 4.9 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 6/46 (13%) Frame = +3 Query: 84 TPFTNIYAQNRAVRRSYCVQKNLPRPSTP------PLQICPPTMAE 203 TPF + A R VR ++ + N+P PS P +C T++E Sbjct: 174 TPFAQVLASLRNVRSNFSLLTNVPIPSNKRSPLGGPPSVCKATLSE 219
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = +3 Query: 153 PRPSTPPLQICPPT--MAESPEQFRGQSRLPRFAEPLR 260 PR +PP ++ PP SP + R +SR PR P+R Sbjct: 247 PRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVR 284
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = +3 Query: 153 PRPSTPPLQICPPT--MAESPEQFRGQSRLPRFAEPLR 260 PR +PP ++ PP SP + R +SR PR P+R Sbjct: 247 PRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVR 284
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = +3 Query: 153 PRPSTPPLQICPPT--MAESPEQFRGQSRLPRFAEPLR 260 PR +PP ++ PP SP + R +SR PR P+R Sbjct: 247 PRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVR 284
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = +3 Query: 153 PRPSTPPLQICPPT--MAESPEQFRGQSRLPRFAEPLR 260 PR +PP ++ PP SP + R +SR PR P+R Sbjct: 247 PRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVR 284
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = +3 Query: 153 PRPSTPPLQICPPT--MAESPEQFRGQSRLPRFAEPLR 260 PR +PP ++ PP SP + R +SR PR P+R Sbjct: 247 PRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVR 284
>AMPN_RABIT (P15541) Aminopeptidase N (EC 3.4.11.2) (rbAPN) (Alanyl| aminopeptidase) (Microsomal aminopeptidase) (Aminopeptidase M) (CD13 antigen) Length = 965 Score = 28.9 bits (63), Expect = 6.4 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 11/92 (11%) Frame = +3 Query: 132 YCVQKNLPRPSTPPLQICPPTMAESPEQFRGQS------RLPRFAEPLRYDLVLRPDLAA 293 Y +KN +P + PT SP Q+ RLP+ P Y++VLRP L+ Sbjct: 32 YRQEKNKNTSQSPSMAPLNPTATSSPATTLDQNLPWNRYRLPKTLIPDSYNVVLRPYLSP 91 Query: 294 CT-----FSGXXXXXXXXXXPTRFLVLNAAEL 374 + F+G T +++++ +L Sbjct: 92 NSQGLYIFTGSSTVRFTCQEATNVIIIHSKKL 123
>AAP1_YEAST (P37898) Alanine/arginine aminopeptidase (EC 3.4.11.-)| Length = 856 Score = 28.9 bits (63), Expect = 6.4 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +3 Query: 234 LPRFAEPLRYDLVLRPDLAACTFSG 308 LP PL YD+ L P+ A TF G Sbjct: 6 LPNNVTPLHYDITLEPNFRAFTFEG 30
>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)| Length = 3530 Score = 28.5 bits (62), Expect = 8.4 Identities = 19/66 (28%), Positives = 29/66 (43%) Frame = +3 Query: 66 VVHFSSTPFTNIYAQNRAVRRSYCVQKNLPRPSTPPLQICPPTMAESPEQFRGQSRLPRF 245 + H ++ P T + + A+ + + PRPS P P E PE+ Q+RL R Sbjct: 2621 MTHLAAAPGTQVSREAVALVKPVT---SAPRPSMAPTSALPSRSLEPPEELT-QTRLHRL 2676 Query: 246 AEPLRY 263 P Y Sbjct: 2677 INPNFY 2682
>GC3_MOUSE (P22436) Ig gamma-3 chain C region, secreted form| Length = 329 Score = 28.5 bits (62), Expect = 8.4 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +3 Query: 138 VQKNLPRPSTPPLQICPP 191 ++ +P+PSTPP CPP Sbjct: 96 IEPRIPKPSTPPGSSCPP 113
>GC3M_MOUSE (P03987) Ig gamma-3 chain C region, membrane-bound form| Length = 398 Score = 28.5 bits (62), Expect = 8.4 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +3 Query: 138 VQKNLPRPSTPPLQICPP 191 ++ +P+PSTPP CPP Sbjct: 96 IEPRIPKPSTPPGSSCPP 113 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,808,609 Number of Sequences: 219361 Number of extensions: 662878 Number of successful extensions: 2798 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 2628 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2792 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
