ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl53h02 |
|---|---|
| Clone Library Name | barley_pub |
>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 964 Score = 92.0 bits (227), Expect = 6e-19 Identities = 42/95 (44%), Positives = 63/95 (66%) Frame = +2 Query: 152 PCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVL 331 PC +++ ++K DLE D K+E +KR + LLLNGE P L +T++R+VL Sbjct: 6 PCYTIINSPDLEVTNEMQLKRDLEKGDTNVKIETLKRVIKLLLNGERYPGLIMTIIRFVL 65 Query: 332 PSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILIC 436 P ++HTI+KLLL++ EI+ K A G++L EMIL+C Sbjct: 66 PVQNHTIKKLLLIFWEIVPKTSADGKLLQEMILVC 100
>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 92.0 bits (227), Expect = 6e-19 Identities = 45/100 (45%), Positives = 68/100 (68%), Gaps = 1/100 (1%) Frame = +2 Query: 140 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 316 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 317 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILIC 436 +R+VLP +DHTI+KLLL++ EI+ K GR+L EMIL+C Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVC 102
>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 92.0 bits (227), Expect = 6e-19 Identities = 45/100 (45%), Positives = 68/100 (68%), Gaps = 1/100 (1%) Frame = +2 Query: 140 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 316 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 317 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILIC 436 +R+VLP +DHTI+KLLL++ EI+ K GR+L EMIL+C Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVC 102
>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 92.0 bits (227), Expect = 6e-19 Identities = 45/100 (45%), Positives = 68/100 (68%), Gaps = 1/100 (1%) Frame = +2 Query: 140 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITV 316 A + C L++ S + +K DLE DV +K EA+K+ ++++LNGE LP L +T+ Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTI 62 Query: 317 VRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILIC 436 +R+VLP +DHTI+KLLL++ EI+ K GR+L EMIL+C Sbjct: 63 IRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVC 102
>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 940 Score = 66.6 bits (161), Expect = 3e-11 Identities = 33/94 (35%), Positives = 55/94 (58%) Frame = +2 Query: 155 CTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLP 334 C LV D A + +K LE + K+ AMK + +++NG++LP++ + V+R+V+P Sbjct: 3 CWTLVQQDFLEAPSVDALKTSLESKNDYVKISAMKTILRVVINGDSLPSILMHVIRFVMP 62 Query: 335 SEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILIC 436 S + ++KLL Y E+ K + G + EMIL C Sbjct: 63 SRNKELKKLLYYYWEVCPKYNNDGTMKQEMILAC 96
>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 973 Score = 58.9 bits (141), Expect = 5e-09 Identities = 29/76 (38%), Positives = 49/76 (64%) Frame = +2 Query: 209 KADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIID 388 KA +GSD K++ MK ++ +L G +P L + ++R+V+PS++ ++KLL Y EI+ Sbjct: 30 KALEKGSD-EQKIDTMKSILVTMLEGNPMPELLMHIIRFVMPSKNKELKKLLYFYWEIVP 88 Query: 389 KRDAAGRVLPEMILIC 436 K G++ EMIL+C Sbjct: 89 KLAEDGKLRHEMILVC 104
>DAB1_MACFA (Q9BGX5) Disabled homolog 1| Length = 555 Score = 31.2 bits (69), Expect = 1.2 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 6/30 (20%) Frame = +3 Query: 21 PVNHSPPLPAPRSRSTS------AADPTTD 92 P +SPP PAPR S S A+DPTTD Sbjct: 477 PSTNSPPTPAPRQSSPSKSSASHASDPTTD 506
>DAB1_HUMAN (O75553) Disabled homolog 1| Length = 555 Score = 31.2 bits (69), Expect = 1.2 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 6/30 (20%) Frame = +3 Query: 21 PVNHSPPLPAPRSRSTS------AADPTTD 92 P +SPP PAPR S S A+DPTTD Sbjct: 477 PSTNSPPTPAPRQSSPSKSSASHASDPTTD 506
>MAM1_SCHPO (P78966) Mating factor M secretion protein mam1 (Multiple drug| resistance protein homolog) (P-glycoprotein) Length = 1336 Score = 31.2 bits (69), Expect = 1.2 Identities = 21/77 (27%), Positives = 40/77 (51%) Frame = +2 Query: 113 PARVHGRSGAMDKPCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGET 292 P +H +SG + P + FD S A + + L ++V+ +EA ++ ++ ++G Sbjct: 1082 PGNLH-KSGYLKFPLVGKIEFDGVSFAYPDSERNHLALNNVSLSIEAREKVAIVGISGSG 1140 Query: 293 LPTLFITVVRYVLPSED 343 TL + ++R PSED Sbjct: 1141 KSTL-VELLRKTYPSED 1156
>IRS1_RAT (P35570) Insulin receptor substrate 1 (IRS-1) (pp185)| Length = 1235 Score = 30.8 bits (68), Expect = 1.6 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +3 Query: 3 ASRLFAPVNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTAD 134 +SRL P+NHS +P P SR + +A + G T+D Sbjct: 357 SSRLHPPLNHSRSIPMPSSRCSPSATSPVSLSSSSTSGHGSTSD 400
>IRS1_MOUSE (P35569) Insulin receptor substrate 1 (IRS-1)| Length = 1233 Score = 30.8 bits (68), Expect = 1.6 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +3 Query: 3 ASRLFAPVNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTAD 134 +SRL P+NHS +P P SR + +A + G T+D Sbjct: 357 SSRLHPPLNHSRSIPMPSSRCSPSATSPVSLSSSSTSGHGSTSD 400
>THIC_RHILO (Q98AZ3) Thiamine biosynthesis protein thiC| Length = 619 Score = 30.0 bits (66), Expect = 2.7 Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 11/87 (12%) Frame = +2 Query: 5 ISPLRSCQPLPPS-----SG---SQISIHLRRRSNHRYPTRRRPPARVHGRSGAMDKPCT 160 ++P S PLP S SG QI + +R S H PT PP V+ SG P T Sbjct: 12 LTPAVSTGPLPASRKIHKSGVLHPQIRVPMREISVH--PTAGEPPVIVYDPSGPYTDP-T 68 Query: 161 LLVHFDKGSAAMANE---IKADLEGSD 232 + +KG A + +E + D+E D Sbjct: 69 VETSIEKGLARLRHEWITARGDVEAYD 95
>IRS1_HUMAN (P35568) Insulin receptor substrate 1 (IRS-1)| Length = 1242 Score = 29.6 bits (65), Expect = 3.5 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +3 Query: 3 ASRLFAPVNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTAD 134 ++RL P+NHS +P P SR + +A + G T+D Sbjct: 362 SARLHPPLNHSRSIPMPASRCSPSATSPVSLSSSSTSGHGSTSD 405
>RSNL2_MOUSE (Q8CI96) Restin-like protein 2| Length = 704 Score = 29.6 bits (65), Expect = 3.5 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 5/83 (6%) Frame = +2 Query: 176 DKG---SAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 346 DKG + + + + LE +D AA + +K+ +LL+ LP T + VLP+ DH Sbjct: 218 DKGQIPAEVVPDPVDMPLEMADAAAIAKEIKQ---MLLDAVPLPC---TSAKAVLPNSDH 271 Query: 347 TIQKLLL--LYLEIIDKRDAAGR 409 T + +L L L++ D+ AG+ Sbjct: 272 TTSRAMLTSLGLKLGDRVVIAGQ 294
>IRS1_CERAE (Q28224) Insulin receptor substrate 1 (IRS-1)| Length = 1251 Score = 29.6 bits (65), Expect = 3.5 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +3 Query: 3 ASRLFAPVNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTAD 134 ++RL P+NHS +P P SR + +A + G T+D Sbjct: 362 SARLHPPLNHSRSIPMPASRCSPSATSPVSLSSSSTSGHGSTSD 405
>IRS1B_XENLA (P84770) Insulin receptor substrate 1-B (IRS1-B) (xIRS-1-B)| (XIRS-L') Length = 1088 Score = 29.6 bits (65), Expect = 3.5 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +3 Query: 3 ASRLFAPVNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTAD 134 +SRL P+NHS +P P +R + +A + G T+D Sbjct: 358 SSRLHPPLNHSRSIPMPATRCSPSATSPVSLSSSSTSGHGSTSD 401
>IRS1A_XENLA (Q91615) Insulin receptor substrate 1-A (IRS1-A) (xIRS-1-A)| (XIRS-L) Length = 885 Score = 29.6 bits (65), Expect = 3.5 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +3 Query: 3 ASRLFAPVNHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTAD 134 +SRL P+NHS +P P +R + +A + G T+D Sbjct: 155 SSRLHPPLNHSRSIPMPATRCSPSATSPVSLSSSSTSGHGSTSD 198
>DNAE2_SYMTH (Q67N73) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1085 Score = 29.6 bits (65), Expect = 3.5 Identities = 19/58 (32%), Positives = 31/58 (53%) Frame = -2 Query: 208 DLIRHGGGALVEVD*QRARLVHGAGSAVHPRRRATACGVSVVGSAAEVDRDLGAGRGG 35 DL+R GGA+ + A ++ GA +H RRA V+ + A + ++ GAG+ G Sbjct: 868 DLVRRTGGAVPRGPLE-ALVLAGAFDRLHSNRRAALWQVAHLLEAERIRQERGAGQAG 924
>FREM2_MOUSE (Q6NVD0) FRAS1-related extracellular matrix protein 2 precursor| (ECM3 homolog) (NV domain-containing protein 1) Length = 3160 Score = 28.9 bits (63), Expect = 5.9 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = +2 Query: 272 LLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMILI 433 L L+ T L + + Y PSED ++L L LEI+D AA M+++ Sbjct: 371 LPLSSFTQRDLRLLKIAYQPPSEDSDQERLFELELEIVDPEGAASDPFAFMVVV 424
>GR43A_DROME (Q9V4K2) Putative gustatory receptor 43a| Length = 427 Score = 28.9 bits (63), Expect = 5.9 Identities = 20/63 (31%), Positives = 32/63 (50%) Frame = +2 Query: 248 EAMKRAVMLLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRVLPEMI 427 E++ + V LL N + LFI V + H + L+LE++ KRD G + +M+ Sbjct: 279 ESLGKCVHLLSNSFGIAVLFILVSCLL-----HLVATAYFLFLELLSKRD-NGYLWVQML 332 Query: 428 LIC 436 IC Sbjct: 333 WIC 335
>ANPRC_RAT (P41740) Atrial natriuretic peptide clearance receptor precursor| (ANP-C) (ANPRC) (NPR-C) (Atrial natriuretic peptide C-type receptor) Length = 535 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/44 (25%), Positives = 26/44 (59%) Frame = +2 Query: 215 DLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 346 DL+ D+ ++ +R V++ +G+T+ + + V R+ + S D+ Sbjct: 236 DLDLDDIVRYIQGSERVVIMCASGDTIRRIMLAVHRHGMTSGDY 279
>POTE8_HUMAN (Q6S8J7) Prostate, ovary, testis expressed protein on chromosome 8| Length = 498 Score = 28.5 bits (62), Expect = 7.7 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 3/91 (3%) Frame = +2 Query: 143 MDKPCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLNGE--TLPTLF-IT 313 +D+ C L V K A+ ++ + + A+MLL +G LP ++ T Sbjct: 119 LDRQCQLHVFDSKKRTALIKAVQCQED-----------ECALMLLQHGTDPNLPDMYGNT 167 Query: 314 VVRYVLPSEDHTIQKLLLLYLEIIDKRDAAG 406 + Y + +ED + K LLLY I+ ++ G Sbjct: 168 ALHYAVYNEDKLMAKTLLLYGADIESKNKGG 198
>ISPG_AQUAE (O67496) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 357 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -2 Query: 100 CGVSVVGSAAEVDRDLGAGRGGEWL 26 C V+ +G A E D L GRG WL Sbjct: 300 CVVNAIGEAREADIGLACGRGFAWL 324
>ANPRC_MOUSE (P70180) Atrial natriuretic peptide clearance receptor precursor| (ANP-C) (ANPRC) (NPR-C) (Atrial natriuretic peptide C-type receptor) (EF-2) Length = 536 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/44 (25%), Positives = 26/44 (59%) Frame = +2 Query: 215 DLEGSDVAAKVEAMKRAVMLLLNGETLPTLFITVVRYVLPSEDH 346 DL+ D+ ++ +R V++ +G+T+ + + V R+ + S D+ Sbjct: 236 DLDLDDIVRYIQGSERVVIMCASGDTIRRIMLAVHRHGMTSGDY 279 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,553,655 Number of Sequences: 219361 Number of extensions: 813016 Number of successful extensions: 3953 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3611 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3936 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
