ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl53h02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_462832.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3111 Score = 434 bits (219), Expect = e-118 Identities = 288/311 (92%) Strand = Plus / Plus Query: 130 cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 189 |||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| Sbjct: 246 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 305 Query: 190 cgccatggcgaatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcga 249 ||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| || Sbjct: 306 cgccatggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtgga 365 Query: 250 ggccatgaagcgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcat 309 |||||||||||||||||||||||||||||||| ||||||||||| || || |||||||| Sbjct: 366 cgccatgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcat 425 Query: 310 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcct 369 ||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| Sbjct: 426 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagctgctcctcct 485 Query: 370 ctacctcgagatcattgacaagcgcgatgccgctggccgcgtcctcccggagatgatcct 429 ||||||||||||||| ||||||||||| ||||| ||| | | |||||||||||||||||| Sbjct: 486 ctacctcgagatcatcgacaagcgcgacgccgccggcaggggcctcccggagatgatcct 545 Query: 430 catctgccaga 440 ||||||||||| Sbjct: 546 catctgccaga 556
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 434 bits (219), Expect = e-118 Identities = 288/311 (92%) Strand = Plus / Minus Query: 130 cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 189 |||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| Sbjct: 10025978 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 10025919 Query: 190 cgccatggcgaatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcga 249 ||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| || Sbjct: 10025918 cgccatggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtgga 10025859 Query: 250 ggccatgaagcgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcat 309 |||||||||||||||||||||||||||||||| ||||||||||| || || |||||||| Sbjct: 10025858 cgccatgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcat 10025799 Query: 310 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcct 369 ||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| Sbjct: 10025798 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagctgctcctcct 10025739 Query: 370 ctacctcgagatcattgacaagcgcgatgccgctggccgcgtcctcccggagatgatcct 429 ||||||||||||||| ||||||||||| ||||| ||| | | |||||||||||||||||| Sbjct: 10025738 ctacctcgagatcatcgacaagcgcgacgccgccggcaggggcctcccggagatgatcct 10025679 Query: 430 catctgccaga 440 ||||||||||| Sbjct: 10025678 catctgccaga 10025668
>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1085F09 Length = 132713 Score = 434 bits (219), Expect = e-118 Identities = 288/311 (92%) Strand = Plus / Minus Query: 130 cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 189 |||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| Sbjct: 106260 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 106201 Query: 190 cgccatggcgaatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcga 249 ||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| || Sbjct: 106200 cgccatggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtgga 106141 Query: 250 ggccatgaagcgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcat 309 |||||||||||||||||||||||||||||||| ||||||||||| || || |||||||| Sbjct: 106140 cgccatgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcat 106081 Query: 310 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcct 369 ||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| Sbjct: 106080 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagctgctcctcct 106021 Query: 370 ctacctcgagatcattgacaagcgcgatgccgctggccgcgtcctcccggagatgatcct 429 ||||||||||||||| ||||||||||| ||||| ||| | | |||||||||||||||||| Sbjct: 106020 ctacctcgagatcatcgacaagcgcgacgccgccggcaggggcctcccggagatgatcct 105961 Query: 430 catctgccaga 440 ||||||||||| Sbjct: 105960 catctgccaga 105950
>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0036E02 Length = 145931 Score = 434 bits (219), Expect = e-118 Identities = 288/311 (92%) Strand = Plus / Minus Query: 130 cagatccggcgccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgc 189 |||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| Sbjct: 120471 cagatccggcgccatggagaagccgagcacgctgctggtccacttcgacaagggctccgc 120412 Query: 190 cgccatggcgaatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcga 249 ||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| || Sbjct: 120411 cgccatggccggtgagatcaaggcggatctcgagggcagcgacgtggccgccaaggtgga 120352 Query: 250 ggccatgaagcgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcat 309 |||||||||||||||||||||||||||||||| ||||||||||| || || |||||||| Sbjct: 120351 cgccatgaagcgcgccgtcatgctcctcctcaacggcgagaccctccccaccctcttcat 120292 Query: 310 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcct 369 ||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| Sbjct: 120291 caccgtcgtccgctacgtcctcccctccgaggaccacaccatccagaagctgctcctcct 120232 Query: 370 ctacctcgagatcattgacaagcgcgatgccgctggccgcgtcctcccggagatgatcct 429 ||||||||||||||| ||||||||||| ||||| ||| | | |||||||||||||||||| Sbjct: 120231 ctacctcgagatcatcgacaagcgcgacgccgccggcaggggcctcccggagatgatcct 120172 Query: 430 catctgccaga 440 ||||||||||| Sbjct: 120171 catctgccaga 120161
>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence Length = 190721 Score = 305 bits (154), Expect = 6e-80 Identities = 267/304 (87%), Gaps = 3/304 (0%) Strand = Plus / Minus Query: 140 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 199 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 21432 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 21373 Query: 200 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 259 || ||||||||||| || || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 21372 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 21313 Query: 260 cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 319 |||||| ||||||| |||||||| ||||||||||| || |||||||||||||||||| Sbjct: 21312 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 21253 Query: 320 cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 379 ||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| Sbjct: 21252 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 21193 Query: 380 atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 436 ||| | ||||||||||| ||| | ||| || |||||||||||||||||||||||| Sbjct: 21192 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 21133 Query: 437 caga 440 |||| Sbjct: 21132 caga 21129
>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055G24 map S20116S, complete sequence Length = 174210 Score = 305 bits (154), Expect = 6e-80 Identities = 267/304 (87%), Gaps = 3/304 (0%) Strand = Plus / Minus Query: 140 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 199 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 170897 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170838 Query: 200 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 259 || ||||||||||| || || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 170837 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 170778 Query: 260 cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 319 |||||| ||||||| |||||||| ||||||||||| || |||||||||||||||||| Sbjct: 170777 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 170718 Query: 320 cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 379 ||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| Sbjct: 170717 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 170658 Query: 380 atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 436 ||| | ||||||||||| ||| | ||| || |||||||||||||||||||||||| Sbjct: 170657 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 170598 Query: 437 caga 440 |||| Sbjct: 170597 caga 170594
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 305 bits (154), Expect = 6e-80 Identities = 267/304 (87%), Gaps = 3/304 (0%) Strand = Plus / Minus Query: 140 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 199 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 3653760 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 3653701 Query: 200 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 259 || ||||||||||| || || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 3653700 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 3653641 Query: 260 cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 319 |||||| ||||||| |||||||| ||||||||||| || |||||||||||||||||| Sbjct: 3653640 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 3653581 Query: 320 cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 379 ||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| Sbjct: 3653580 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 3653521 Query: 380 atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 436 ||| | ||||||||||| ||| | ||| || |||||||||||||||||||||||| Sbjct: 3653520 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 3653461 Query: 437 caga 440 |||| Sbjct: 3653460 caga 3653457
>dbj|AK072825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136B14, full insert sequence Length = 1667 Score = 305 bits (154), Expect = 6e-80 Identities = 267/304 (87%), Gaps = 3/304 (0%) Strand = Plus / Plus Query: 140 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 199 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 75 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 134 Query: 200 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 259 || ||||||||||| || || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 135 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 194 Query: 260 cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 319 |||||| ||||||| |||||||| ||||||||||| || |||||||||||||||||| Sbjct: 195 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 254 Query: 320 cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 379 ||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| Sbjct: 255 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 314 Query: 380 atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 436 ||| | ||||||||||| ||| | ||| || |||||||||||||||||||||||| Sbjct: 315 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 374 Query: 437 caga 440 |||| Sbjct: 375 caga 378
>dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F21, full insert sequence Length = 3363 Score = 305 bits (154), Expect = 6e-80 Identities = 267/304 (87%), Gaps = 3/304 (0%) Strand = Plus / Plus Query: 140 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 199 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 142 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 201 Query: 200 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 259 || ||||||||||| || || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 202 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 261 Query: 260 cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 319 |||||| ||||||| |||||||| ||||||||||| || |||||||||||||||||| Sbjct: 262 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 321 Query: 320 cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 379 ||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| Sbjct: 322 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 381 Query: 380 atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 436 ||| | ||||||||||| ||| | ||| || |||||||||||||||||||||||| Sbjct: 382 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 441 Query: 437 caga 440 |||| Sbjct: 442 caga 445
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 305 bits (154), Expect = 6e-80 Identities = 267/304 (87%), Gaps = 3/304 (0%) Strand = Plus / Minus Query: 140 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 199 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 3662454 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 3662395 Query: 200 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 259 || ||||||||||| || || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 3662394 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 3662335 Query: 260 cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 319 |||||| ||||||| |||||||| ||||||||||| || |||||||||||||||||| Sbjct: 3662334 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 3662275 Query: 320 cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 379 ||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| Sbjct: 3662274 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 3662215 Query: 380 atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 436 ||| | ||||||||||| ||| | ||| || |||||||||||||||||||||||| Sbjct: 3662214 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 3662155 Query: 437 caga 440 |||| Sbjct: 3662154 caga 3662151
>dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G07, full insert sequence Length = 3332 Score = 299 bits (151), Expect = 4e-78 Identities = 264/301 (87%), Gaps = 3/301 (0%) Strand = Plus / Plus Query: 140 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 199 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 111 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170 Query: 200 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 259 || ||||||||||| || || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 171 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 230 Query: 260 cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 319 |||||| ||||||| |||||||| ||||||||||| || |||||||||||||||||| Sbjct: 231 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 290 Query: 320 cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 379 ||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| Sbjct: 291 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 350 Query: 380 atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 436 ||| | ||||||||||| ||| | ||| || |||||||||||||||||||||||| Sbjct: 351 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 410 Query: 437 c 437 | Sbjct: 411 c 411
>dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002A09, full insert sequence Length = 3332 Score = 299 bits (151), Expect = 4e-78 Identities = 264/301 (87%), Gaps = 3/301 (0%) Strand = Plus / Plus Query: 140 gccatggacaagccgtgcacgctgctagtccacttcgacaagggctccgccgccatggcg 199 |||||||| ||||| ||||| || || ||||||||||||||||||||| || ||||||| Sbjct: 111 gccatggagaagccatgcaccctcctggtccacttcgacaagggctccccctccatggcc 170 Query: 200 aatgagatcaaggcggatctggagggcagcgacgtcgccgccaaggtcgaggccatgaag 259 || ||||||||||| || || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 171 aacgagatcaaggccgacctcgagggcagcgacgtcgccgccaaggtcgacgccatgaag 230 Query: 260 cgcgccgtcatgctcctcctcaatggcgagaccctgccgacgctcttcatcaccgtcgtc 319 |||||| ||||||| |||||||| ||||||||||| || |||||||||||||||||| Sbjct: 231 cgcgccatcatgctgctcctcaacggcgagaccctcccccacctcttcatcaccgtcgtc 290 Query: 320 cgctacgtcctcccctccgaggaccacaccatccagaagttgttgctcctctacctcgag 379 ||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| Sbjct: 291 cgctacgtcctcccctccgaggaccacaccatccagaagctcctcctcctctacctcgag 350 Query: 380 atcattgacaagcgcga---tgccgctggccgcgtcctcccggagatgatcctcatctgc 436 ||| | ||||||||||| ||| | ||| || |||||||||||||||||||||||| Sbjct: 351 atcgtcgacaagcgcgacgtcgcctccggcaaggtactcccggagatgatcctcatctgc 410 Query: 437 c 437 | Sbjct: 411 c 411
>ref|XM_956946.1| Neurospora crassa OR74A hypothetical protein (NCU08828.1) partial mRNA Length = 2685 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 174 tcgacaagggctccgccgccat 195 |||||||||||||||||||||| Sbjct: 2162 tcgacaagggctccgccgccat 2183
>ref|XM_330944.1| Neurospora crassa OR74A hypothetical protein (NCU08828.1) partial mRNA Length = 2685 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 174 tcgacaagggctccgccgccat 195 |||||||||||||||||||||| Sbjct: 2162 tcgacaagggctccgccgccat 2183
>emb|X80052.1|NCFOX2 N.crassa fox-2 gene Length = 3401 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 174 tcgacaagggctccgccgccat 195 |||||||||||||||||||||| Sbjct: 2665 tcgacaagggctccgccgccat 2686
>gb|AE005990.1| Caulobacter crescentus CB15 section 316 of 359 of the complete genome Length = 10324 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 213 cggatctggagggcagcgacgtcgccgcc 241 |||||||| ||||| |||||||||||||| Sbjct: 542 cggatctgcagggcggcgacgtcgccgcc 514 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 ctggagggcagcgacgtcgccgcc 241 ||||||||| |||||||||||||| Sbjct: 508 ctggagggcggcgacgtcgccgcc 531
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 274 cctcctcaatggcgagaccctgccg 298 |||||||||||||||||| |||||| Sbjct: 7448022 cctcctcaatggcgagactctgccg 7448046
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 tcgccgccaaggtcgaggcca 254 ||||||||||||||||||||| Sbjct: 4038174 tcgccgccaaggtcgaggcca 4038194
>gb|BC072525.1| Rattus norvegicus paralemmin, mRNA (cDNA clone MGC:91516 IMAGE:7097177), complete cds Length = 2635 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 aggaccacaccatccagaag 358 |||||||||||||||||||| Sbjct: 886 aggaccacaccatccagaag 905
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 gccgccaaggtcgaggccat 255 |||||||||||||||||||| Sbjct: 2893165 gccgccaaggtcgaggccat 2893146
>ref|NM_130829.1| Rattus norvegicus paralemmin (Palm), mRNA Length = 2571 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 aggaccacaccatccagaag 358 |||||||||||||||||||| Sbjct: 845 aggaccacaccatccagaag 864
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 cgccgtcgccctccggcgcg 120 |||||||||||||||||||| Sbjct: 612231 cgccgtcgccctccggcgcg 612250
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 ccaaggtcgaggccatgaag 259 |||||||||||||||||||| Sbjct: 1720007 ccaaggtcgaggccatgaag 1720026 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 ccaaggtcgaggccatgaag 259 |||||||||||||||||||| Sbjct: 728522 ccaaggtcgaggccatgaag 728541
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 tcctcaatggcgagaccctg 295 |||||||||||||||||||| Sbjct: 4156014 tcctcaatggcgagaccctg 4156033
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 gatcaaggcggatctggagg 224 |||||||||||||||||||| Sbjct: 1763887 gatcaaggcggatctggagg 1763868
>gb|AC131405.5| Rattus norvegicus BAC CH230-179I7 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 217197 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 aggaccacaccatccagaag 358 |||||||||||||||||||| Sbjct: 142948 aggaccacaccatccagaag 142929
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 cgtcgccgccaaggtcgagg 251 |||||||||||||||||||| Sbjct: 4994308 cgtcgccgccaaggtcgagg 4994327
>gb|DQ184948.1| Malus x domestica putative receptor kinase (DIPM1) mRNA, complete cds Length = 2440 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 cgtcgtccgctacgtcctcc 332 |||||||||||||||||||| Sbjct: 265 cgtcgtccgctacgtcctcc 284
>gb|AY103647.1| Zea mays PCO142084 mRNA sequence Length = 2598 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 tgccgctggccgcgtcctcc 416 |||||||||||||||||||| Sbjct: 1826 tgccgctggccgcgtcctcc 1807
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 ccaaggtcgaggccatgaag 259 |||||||||||||||||||| Sbjct: 759001 ccaaggtcgaggccatgaag 759020
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 gcgacgtcgccgccaaggtc 247 |||||||||||||||||||| Sbjct: 1266036 gcgacgtcgccgccaaggtc 1266017
>dbj|AB058889.1| Rattus norvegicus mRNA for paralemmin, complete cds Length = 2571 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 aggaccacaccatccagaag 358 |||||||||||||||||||| Sbjct: 845 aggaccacaccatccagaag 864 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,431,264 Number of Sequences: 3902068 Number of extensions: 2431264 Number of successful extensions: 46547 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45631 Number of HSP's gapped (non-prelim): 908 length of query: 440 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 418 effective length of database: 17,147,199,772 effective search space: 7167529504696 effective search space used: 7167529504696 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
