ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl53h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CRI4_MAIZE (O24585) Putative receptor protein kinase CRINKLY4 pr... 54 1e-07
2ATX7_HUMAN (O15265) Ataxin-7 (Spinocerebellar ataxia type 7 prot... 31 1.3
3SAM68_HUMAN (Q07666) KH domain-containing, RNA-binding, signal t... 29 5.0
4CAC1B_RABIT (Q05152) Voltage-dependent N-type calcium channel al... 29 5.0
5MTR1L_MOUSE (O88495) Melatonin-related receptor (G protein-coupl... 29 6.6
6DLL3_XENLA (P54655) Homeobox protein DLL-3 (XDLL-3) 29 6.6

>CRI4_MAIZE (O24585) Putative receptor protein kinase CRINKLY4 precursor (EC|
           2.7.11.1)
          Length = 901

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 23/28 (82%), Positives = 25/28 (89%)
 Frame = +2

Query: 377 PSWAYGLGSMGSISVSYGEDGPVFCGLS 460
           P WA GLGSM SI+VSYGEDGPVFCGL+
Sbjct: 19  PGWACGLGSMSSIAVSYGEDGPVFCGLN 46



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>ATX7_HUMAN (O15265) Ataxin-7 (Spinocerebellar ataxia type 7 protein)|
          Length = 892

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 101 PAAPHPDALRLCSSRGDARSLLLFPAVHSSPHCPPSATTPMS--AGIRGKGDD 253
           P+ P P     C ++    + +  P VH SPH P  AT P S  +   G+GDD
Sbjct: 450 PSLPRPPG---CPAQQGGSAPIDPPPVHESPHPPLPATEPASRLSSEEGEGDD 499



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>SAM68_HUMAN (Q07666) KH domain-containing, RNA-binding, signal|
           transduction-associated protein 1 (p21 Ras
           GTPase-activating protein-associated p62)
           (GAP-associated tyrosine phosphoprotein p62)
           (Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
          Length = 443

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 19/43 (44%), Positives = 20/43 (46%)
 Frame = +2

Query: 92  SSQPAAPHPDALRLCSSRGDARSLLLFPAVHSSPHCPPSATTP 220
           S QP  PH        SRG AR+    PA    P  PPSAT P
Sbjct: 35  SRQPPLPHRSRGGGGGSRGGARAS---PATQPPPLLPPSATGP 74



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>CAC1B_RABIT (Q05152) Voltage-dependent N-type calcium channel alpha-1B subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.2)
            (Calcium channel, L type, alpha-1 polypeptide isoform 5)
            (Brain calcium channel III) (BIII)
          Length = 2339

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -3

Query: 371  RLGSRERELEHCPFLEARS*CRRDSFAGSAVTIAAGPPVCRR 246
            R   ++R LE  P L A +    DS  G  +    GPP CRR
Sbjct: 2060 RRDRKQRSLEKGPSLSADTDGAPDSTVGPGLPTGEGPPGCRR 2101



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>MTR1L_MOUSE (O88495) Melatonin-related receptor (G protein-coupled receptor 50)|
           (H9)
          Length = 583

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 116 PDALRLCSSRGDARSLLLFPAVHSSPHCPPSATTPMSAGIRGKGDDI 256
           P ++   S  G  +S  ++P   SS HC P++     A +  KGD +
Sbjct: 399 PASIHHKSISGHPKSASVYPKPASSVHCKPASVHFKPASVHFKGDSV 445



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>DLL3_XENLA (P54655) Homeobox protein DLL-3 (XDLL-3)|
          Length = 289

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +2

Query: 92  SSQPAAPH-PDALRLCSSRGDARSLLLFPAVHSSPHCPPSATTPMSAGIRGKG 247
           SS P A + P +  +   +G +RSL   P VHS P   PS+++P S+ +   G
Sbjct: 209 SSDPMACNSPQSPVVWEPQGSSRSLSHHPHVHSHPQ--PSSSSPASSYLENSG 259


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,483,427
Number of Sequences: 219361
Number of extensions: 1052961
Number of successful extensions: 3711
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3705
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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