>CRI4_MAIZE (O24585) Putative receptor protein kinase CRINKLY4 precursor (EC|
           2.7.11.1)
          Length = 901

 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 36/42 (85%), Positives = 38/42 (90%)
 Frame = +3

Query: 342 PSWAYGLGSMGSISVSYGEDGPVFCGLSSDGSHLVACSGADA 467
           P WA GLGSM SI+VSYGEDGPVFCGL+SDGSHLVAC GADA
Sbjct: 19  PGWACGLGSMSSIAVSYGEDGPVFCGLNSDGSHLVACFGADA 60

>GPDA_DESVH (P61739) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)|
           (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
          Length = 330

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 357 GLGSMGSISVSYGEDGPVFCGLSSDGSHLVACSG 458
           GL  MG + V+ G  G  F GLS  G  ++ C+G
Sbjct: 217 GLAEMGRLGVALGARGSTFMGLSGLGDLVLTCTG 250

>SAMD6_MOUSE (Q6GQX6) Sterile alpha motif domain-containing protein 6|
          Length = 883

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +1

Query: 346 AGPMASAPWDPSRCPTARTVRCSAASARTAPTWSPAPA 459
           +GP +S   DPS+ P + T   SA S  T+PT +P+P+
Sbjct: 706 SGPSSSKKLDPSKRPPSGT---SATSKSTSPTLTPSPS 740

>ATX7_HUMAN (O15265) Ataxin-7 (Spinocerebellar ataxia type 7 protein)|
          Length = 892

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 66  PAAPHPDALRLCSSRGDARSLLLFPAVHSSPHCPPSATTPMS--AGIRGKGDD 218
           P+ P P     C ++    + +  P VH SPH P  AT P S  +   G+GDD
Sbjct: 450 PSLPRPPG---CPAQQGGSAPIDPPPVHESPHPPLPATEPASRLSSEEGEGDD 499

>IE18_PRVIF (P11675) Immediate-early protein IE180|
          Length = 1461

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 334 PCYRAGPMASAPWDPSRC-PTARTVRCSAASARTAPTWSPAPARTP 468
           P  RAGP  S P   +   P+A +   +++SA  +P  +P PAR P
Sbjct: 418 PLARAGPPPSPPAPAAAPRPSASSASATSSSAAASPAPAPEPARPP 463

>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1840

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +1

Query: 268  SPALAPSFKEWAVF*LSLSAA*PCYRAGPMASAPWDPSRCPTARTVR-CSAASARTAPTW 444
            SPA +P+   ++    S S   P Y     + +P  PS  PT+ +    S A + T+P +
Sbjct: 1591 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAY 1650

Query: 445  SP-APARTP 468
            SP +PA +P
Sbjct: 1651 SPTSPAYSP 1659

>RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1745

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
 Frame = +1

Query: 232  SGDGDG*AGEGI----SPALAPSFKEWAVF*LSLSAA*PCYRAGPMASAPWDPSRCPTAR 399
            SG G+G    G     SP  +P+   ++    S S   P Y     + +P  PS  PT+ 
Sbjct: 1526 SGYGNGPTSPGFGDVSSPGFSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1585

Query: 400  TVRCSAAS-ARTAPTWSP-APARTP 468
            +   ++ S + T+P++SP +P+ +P
Sbjct: 1586 SYSPTSPSYSPTSPSYSPTSPSYSP 1610



 Score = 28.5 bits (62), Expect = 8.9
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +1

Query: 268  SPALAPSFKEWAVF*LSLSAA*PCYRAGPMASAPWDPSRCPTARTVRCSAAS-ARTAPTW 444
            SPA +P+   ++    S S   P Y     + +P  PS  PT+ +   ++ S + T+P++
Sbjct: 1549 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1608

Query: 445  SP-APARTP 468
            SP +P+ +P
Sbjct: 1609 SPTSPSYSP 1617

>SAM68_HUMAN (Q07666) KH domain-containing, RNA-binding, signal|
           transduction-associated protein 1 (p21 Ras
           GTPase-activating protein-associated p62)
           (GAP-associated tyrosine phosphoprotein p62)
           (Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
          Length = 443

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 19/43 (44%), Positives = 20/43 (46%)
 Frame = +3

Query: 57  SSQPAAPHPDALRLCSSRGDARSLLLFPAVHSSPHCPPSATTP 185
           S QP  PH        SRG AR+    PA    P  PPSAT P
Sbjct: 35  SRQPPLPHRSRGGGGGSRGGARAS---PATQPPPLLPPSATGP 74

>RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1752

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
 Frame = +1

Query: 268  SPALAPSFKEWAVF*LSLSAA*PCYRAGPMASAPWDPSRCPTARTVRCSAAS-ARTAPTW 444
            SP+ +P+   ++    S SA  P Y     + +P  PS  PT+ +   ++ S + T+P++
Sbjct: 1589 SPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1648

Query: 445  SP-APARTP 468
            SP +P+ +P
Sbjct: 1649 SPTSPSYSP 1657



 Score = 29.3 bits (64), Expect = 5.2
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
 Frame = +1

Query: 268  SPALAPSFKEWAVF*LSLSAA*PCYRAGPMASAPWDPSRCPTARTVRCSAAS-ARTAPTW 444
            SP+ +P+   ++    S S   P Y A   + +P  PS  PT+ +   ++ S + T+P++
Sbjct: 1582 SPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1641

Query: 445  SP-APARTP 468
            SP +P+ +P
Sbjct: 1642 SPTSPSYSP 1650

>CAC1B_RABIT (Q05152) Voltage-dependent N-type calcium channel alpha-1B subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.2)
            (Calcium channel, L type, alpha-1 polypeptide isoform 5)
            (Brain calcium channel III) (BIII)
          Length = 2339

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -2

Query: 336  RLGSRERELEHCPFLEARS*CRRDSFAGSAVTIAAGPPVCRR 211
            R   ++R LE  P L A +    DS  G  +    GPP CRR
Sbjct: 2060 RRDRKQRSLEKGPSLSADTDGAPDSTVGPGLPTGEGPPGCRR 2101

>C78A1_MAIZE (P48420) Cytochrome P450 78A1 (EC 1.14.-.-) (CYPLXXVIII)|
          Length = 547

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +1

Query: 334 PCYRAGPMASAP---WDPSRCPTARTVRCSAASARTAPTWSPAPAR 462
           P +  G  ASA    WDP  CP      CSAAS+R     +P P R
Sbjct: 59  PAWTNGRGASASLLSWDPVVCP------CSAASSRCPGAAAPRPRR 98

>RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1853

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +1

Query: 265  ISPALAPSFKEWAVF*LSLSAA*PCYRAGPMASAPWDPSRCPTARTVRCSAAS-ARTAPT 441
            +SP+ +P+   ++    S S   P Y     + +P  PS  PT+ +   ++ S + T+P+
Sbjct: 1612 VSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1671

Query: 442  WSPAPAR 462
            +SP+  R
Sbjct: 1672 YSPSSPR 1678

>SCTM1_HUMAN (Q8WVN6) Secreted and transmembrane protein 1 precursor (Protein|
           K12)
          Length = 248

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +3

Query: 291 QGMGSVXXXXXXXXXXXPSWAYGLGSMGSISVSYGEDGPVFCGLSSDGSHL 443
           Q +G++             W   + + G +SVS+GE+  + C +S+  SH+
Sbjct: 14  QALGTLLFLAASLSAQNEGWDSPICTEGVVSVSWGENTVMSCNISNAFSHV 64

>IE18_PRVKA (P33479) Immediate-early protein IE180|
          Length = 1446

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 20/45 (44%), Positives = 24/45 (53%)
 Frame = +1

Query: 334 PCYRAGPMASAPWDPSRCPTARTVRCSAASARTAPTWSPAPARTP 468
           P  RAGP  S P  P+  P     R SA+SA ++   SPAPA  P
Sbjct: 410 PLARAGPPPSPP-APAAAP-----RPSASSASSSAAASPAPAPEP 448

>LAMP2_CHICK (Q90617) Lysosome-associated membrane glycoprotein 2 precursor|
           (LAMP-2)
          Length = 425

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 337 CYRAGPMASAPWDPSRCPTARTVRCSAASARTAPTWSPAPARTP 468
           CY   P A+    P+  PT   V  ++ +   APT +P PA  P
Sbjct: 189 CYADTPTAA----PTVLPTVANVTTASTTISPAPTTAPKPAENP 228

>DLL3_XENLA (P54655) Homeobox protein DLL-3 (XDLL-3)|
          Length = 289

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +3

Query: 57  SSQPAAPH-PDALRLCSSRGDARSLLLFPAVHSSPHCPPSATTPMSAGIRGKG 212
           SS P A + P +  +   +G +RSL   P VHS P   PS+++P S+ +   G
Sbjct: 209 SSDPMACNSPQSPVVWEPQGSSRSLSHHPHVHSHPQ--PSSSSPASSYLENSG 259

>MTR1L_MOUSE (O88495) Melatonin-related receptor (G protein-coupled receptor 50)|
           (H9)
          Length = 583

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 81  PDALRLCSSRGDARSLLLFPAVHSSPHCPPSATTPMSAGIRGKGDDI 221
           P ++   S  G  +S  ++P   SS HC P++     A +  KGD +
Sbjct: 399 PASIHHKSISGHPKSASVYPKPASSVHCKPASVHFKPASVHFKGDSV 445

>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1852

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +1

Query: 265  ISPALAPSFKEWAVF*LSLSAA*PCYRAGPMASAPWDPSRCPTARTVRCSAAS-ARTAPT 441
            +SP+ +P+   ++    S S   P Y     + +P  PS  PT+ +   S+ S + ++P+
Sbjct: 1608 VSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPS 1667

Query: 442  WSPAPAR 462
            +SP+  R
Sbjct: 1668 YSPSSPR 1674

>RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1) (B220)
          Length = 1733

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +1

Query: 268  SPALAPSFKEWAVF*LSLSAA*PCYRAGPMASAPWDPSRCPTARTVRCSAAS-ARTAPTW 444
            SP+ +P+   ++    S S   P Y     + +P  PS  PT+ +   ++ S + T+P++
Sbjct: 1595 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1654

Query: 445  SP-APARTP 468
            SP +PA +P
Sbjct: 1655 SPTSPAYSP 1663



 Score = 28.5 bits (62), Expect = 8.9
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +1

Query: 268  SPALAPSFKEWAVF*LSLSAA*PCYRAGPMASAPWDPSRCPTARTVRCSAAS-ARTAPTW 444
            SPA +P+   ++    S S   P Y     + +P  PS  PT+ +   ++ S + T+P++
Sbjct: 1553 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1612

Query: 445  SP-APARTP 468
            SP +P+ +P
Sbjct: 1613 SPTSPSYSP 1621

>S6A13_HUMAN (Q9NSD5) Sodium- and chloride-dependent GABA transporter 2|
          Length = 569

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 352 PMASAPWDPSRCPTARTVRCSAASARTAPTWSPAPARTP 468
           P AS   +PSR P+ R    S A  RT P+ +    R P
Sbjct: 519 PGASTDSEPSRAPSERESVSSCAQPRTCPSGTQQDPRLP 557

>DXR_MENPI (Q9XES0) 1-deoxy-D-xylulose 5-phosphate reductoisomerase,|
           chloroplast precursor (EC 1.1.1.267) (DXP
           reductoisomerase) (1-deoxyxylulose-5-phosphate
           reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate
           synthase)
          Length = 475

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
 Frame = +1

Query: 379 SRCPTARTVRCSAASARTAPTWS----PAPAR 462
           SRC  A+ V CSA S    P W     P P R
Sbjct: 42  SRCTAAKRVHCSAQSQSPPPAWPGRAFPEPGR 73


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,135,944
Number of Sequences: 219361
Number of extensions: 1114048
Number of successful extensions: 4729
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 4163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4689
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)