ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl53g09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468998.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2706 Score = 117 bits (59), Expect = 3e-23 Identities = 116/135 (85%) Strand = Plus / Plus Query: 335 cttgctaccgagctgggcctatggcctcggctccatgggatccatctcggtgtcctacgg 394 |||||| || || |||||||||||||| || ||||||| |||||| | ||||||||||| Sbjct: 42 cttgctgcccagttgggcctatggccttggatccatggcgtccatcgccgtgtcctacgg 101 Query: 395 cgaggacggtccggtgttctgcggcctcagctcggacggctcccacttggtcgcctgctc 454 ||||||||| || ||||||||||| |||| |||||| || || ||||||||| |||||| Sbjct: 102 cgaggacggccccgtgttctgcgggctcaactcggatggttctcacttggtcacctgctt 161 Query: 455 cggcgcggacgcctc 469 ||||||||| ||||| Sbjct: 162 cggcgcggatgcctc 176
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 117 bits (59), Expect = 3e-23 Identities = 116/135 (85%) Strand = Plus / Plus Query: 335 cttgctaccgagctgggcctatggcctcggctccatgggatccatctcggtgtcctacgg 394 |||||| || || |||||||||||||| || ||||||| |||||| | ||||||||||| Sbjct: 24304453 cttgctgcccagttgggcctatggccttggatccatggcgtccatcgccgtgtcctacgg 24304512 Query: 395 cgaggacggtccggtgttctgcggcctcagctcggacggctcccacttggtcgcctgctc 454 ||||||||| || ||||||||||| |||| |||||| || || ||||||||| |||||| Sbjct: 24304513 cgaggacggccccgtgttctgcgggctcaactcggatggttctcacttggtcacctgctt 24304572 Query: 455 cggcgcggacgcctc 469 ||||||||| ||||| Sbjct: 24304573 cggcgcggatgcctc 24304587
>gb|AC120505.7| Oryza sativa chromosome 3 BAC OSJNBa0066H15 genomic sequence, complete sequence Length = 171664 Score = 117 bits (59), Expect = 3e-23 Identities = 116/135 (85%) Strand = Plus / Minus Query: 335 cttgctaccgagctgggcctatggcctcggctccatgggatccatctcggtgtcctacgg 394 |||||| || || |||||||||||||| || ||||||| |||||| | ||||||||||| Sbjct: 76171 cttgctgcccagttgggcctatggccttggatccatggcgtccatcgccgtgtcctacgg 76112 Query: 395 cgaggacggtccggtgttctgcggcctcagctcggacggctcccacttggtcgcctgctc 454 ||||||||| || ||||||||||| |||| |||||| || || ||||||||| |||||| Sbjct: 76111 cgaggacggccccgtgttctgcgggctcaactcggatggttctcacttggtcacctgctt 76052 Query: 455 cggcgcggacgcctc 469 ||||||||| ||||| Sbjct: 76051 cggcgcggatgcctc 76037
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 117 bits (59), Expect = 3e-23 Identities = 116/135 (85%) Strand = Plus / Plus Query: 335 cttgctaccgagctgggcctatggcctcggctccatgggatccatctcggtgtcctacgg 394 |||||| || || |||||||||||||| || ||||||| |||||| | ||||||||||| Sbjct: 24221922 cttgctgcccagttgggcctatggccttggatccatggcgtccatcgccgtgtcctacgg 24221981 Query: 395 cgaggacggtccggtgttctgcggcctcagctcggacggctcccacttggtcgcctgctc 454 ||||||||| || ||||||||||| |||| |||||| || || ||||||||| |||||| Sbjct: 24221982 cgaggacggccccgtgttctgcgggctcaactcggatggttctcacttggtcacctgctt 24222041 Query: 455 cggcgcggacgcctc 469 ||||||||| ||||| Sbjct: 24222042 cggcgcggatgcctc 24222056
>dbj|AK101339.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034J17, full insert sequence Length = 3772 Score = 117 bits (59), Expect = 3e-23 Identities = 116/135 (85%) Strand = Plus / Plus Query: 335 cttgctaccgagctgggcctatggcctcggctccatgggatccatctcggtgtcctacgg 394 |||||| || || |||||||||||||| || ||||||| |||||| | ||||||||||| Sbjct: 718 cttgctgcccagttgggcctatggccttggatccatggcgtccatcgccgtgtcctacgg 777 Query: 395 cgaggacggtccggtgttctgcggcctcagctcggacggctcccacttggtcgcctgctc 454 ||||||||| || ||||||||||| |||| |||||| || || ||||||||| |||||| Sbjct: 778 cgaggacggccccgtgttctgcgggctcaactcggatggttctcacttggtcacctgctt 837 Query: 455 cggcgcggacgcctc 469 ||||||||| ||||| Sbjct: 838 cggcgcggatgcctc 852
>dbj|AB057787.1| Oryza sativa OsCR4 gene, complete cds Length = 3859 Score = 117 bits (59), Expect = 3e-23 Identities = 116/135 (85%) Strand = Plus / Plus Query: 335 cttgctaccgagctgggcctatggcctcggctccatgggatccatctcggtgtcctacgg 394 |||||| || || |||||||||||||| || ||||||| |||||| | ||||||||||| Sbjct: 846 cttgctgcccagttgggcctatggccttggatccatggcgtccatcgccgtgtcctacgg 905 Query: 395 cgaggacggtccggtgttctgcggcctcagctcggacggctcccacttggtcgcctgctc 454 ||||||||| || ||||||||||| |||| |||||| || || ||||||||| |||||| Sbjct: 906 cgaggacggccccgtgttctgcgggctcaactcggatggttctcacttggtcacctgctt 965 Query: 455 cggcgcggacgcctc 469 ||||||||| ||||| Sbjct: 966 cggcgcggatgcctc 980
>gb|AY110360.1| Zea mays CL2011_1 mRNA sequence Length = 3324 Score = 95.6 bits (48), Expect = 1e-16 Identities = 93/108 (86%) Strand = Plus / Plus Query: 346 gctgggcctatggcctcggctccatgggatccatctcggtgtcctacggcgaggacggtc 405 ||||||||| |||||| ||||||||| ||||| |||||||||| || ||||| |||| Sbjct: 215 gctgggcctgtggccttggctccatgtcgtccattgcggtgtcctatggggaggatggtc 274 Query: 406 cggtgttctgcggcctcagctcggacggctcccacttggtcgcctgct 453 |||||||||| ||||||| ||| |||||||||||| | |||||||||| Sbjct: 275 cggtgttctgtggcctcaactccgacggctcccacctcgtcgcctgct 322
>gb|U67422.1|ZMU67422 Zea mays CRINKLY4 precursor (cr4) mRNA, complete cds Length = 3346 Score = 95.6 bits (48), Expect = 1e-16 Identities = 93/108 (86%) Strand = Plus / Plus Query: 346 gctgggcctatggcctcggctccatgggatccatctcggtgtcctacggcgaggacggtc 405 ||||||||| |||||| ||||||||| ||||| |||||||||| || ||||| |||| Sbjct: 215 gctgggcctgtggccttggctccatgtcgtccattgcggtgtcctatggggaggatggtc 274 Query: 406 cggtgttctgcggcctcagctcggacggctcccacttggtcgcctgct 453 |||||||||| ||||||| ||| |||||||||||| | |||||||||| Sbjct: 275 cggtgttctgtggcctcaactccgacggctcccacctcgtcgcctgct 322
>ref|XM_468447.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1719 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 cctcgccgcctccgccgcgct 53 ||||||||||||||||||||| Sbjct: 546 cctcgccgcctccgccgcgct 566
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 cctcgccgcctccgccgcgct 53 ||||||||||||||||||||| Sbjct: 4550220 cctcgccgcctccgccgcgct 4550240
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 cctcgccgcctccgccgcgct 53 ||||||||||||||||||||| Sbjct: 35286777 cctcgccgcctccgccgcgct 35286797
>dbj|AP004020.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1119_A01 Length = 108727 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 cctcgccgcctccgccgcgct 53 ||||||||||||||||||||| Sbjct: 37111 cctcgccgcctccgccgcgct 37131
>dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0474F11 Length = 139544 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 cctcgccgcctccgccgcgct 53 ||||||||||||||||||||| Sbjct: 98827 cctcgccgcctccgccgcgct 98847
>dbj|AK109819.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-A04, full insert sequence Length = 1928 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 cctcgccgcctccgccgcgct 53 ||||||||||||||||||||| Sbjct: 119 cctcgccgcctccgccgcgct 139
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 cctcgccgcctccgccgcgct 53 ||||||||||||||||||||| Sbjct: 4550201 cctcgccgcctccgccgcgct 4550221
>emb|AL928749.4|CNS08CBM Oryza sativa chromosome 12, . BAC OSJNBa0002O20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 129155 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 cctcgccgcctccgccgcgct 53 ||||||||||||||||||||| Sbjct: 54558 cctcgccgcctccgccgcgct 54538
>gb|BT013231.1| Lycopersicon esculentum clone 134477R, mRNA sequence Length = 1652 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 44 ccgccgcgcttgttcctcccaacc 67 |||||||||| ||||||||||||| Sbjct: 677 ccgccgcgctagttcctcccaacc 654
>ref|XM_747609.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g13320) partial mRNA Length = 1131 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 tatggcctcggctccatggg 373 |||||||||||||||||||| Sbjct: 199 tatggcctcggctccatggg 218
>gb|AC091744.5| Homo sapiens BAC clone RP11-372I24 from 7, complete sequence Length = 23032 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 ctcctctccgcactgccctc 168 |||||||||||||||||||| Sbjct: 10046 ctcctctccgcactgccctc 10027
>emb|BX649606.1| Aspergillus fumigatus BAC pilot project supercontig; segment 2/3 Length = 348551 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 tatggcctcggctccatggg 373 |||||||||||||||||||| Sbjct: 243684 tatggcctcggctccatggg 243665
>gb|AC026583.10| Homo sapiens chromosome 15, clone RP11-20C17, complete sequence Length = 175472 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 150 tcctctccgcactgccctccctcg 173 |||||||| ||||||||||||||| Sbjct: 157553 tcctctcctcactgccctccctcg 157576
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 tacctcgccgcctccgccgc 50 |||||||||||||||||||| Sbjct: 2515241 tacctcgccgcctccgccgc 2515222
>gb|AC011648.12| Homo sapiens chromosome 15, clone RP11-15F13, complete sequence Length = 107336 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 150 tcctctccgcactgccctccctcg 173 |||||||| ||||||||||||||| Sbjct: 98945 tcctctcctcactgccctccctcg 98922
>emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right terminal inverted repeat Length = 243019 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 386 gtcctacggcgaggacggtccggt 409 ||||| |||||||||||||||||| Sbjct: 27812 gtccttcggcgaggacggtccggt 27835
>emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left terminal inverted repeat Length = 273746 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 386 gtcctacggcgaggacggtccggt 409 ||||| |||||||||||||||||| Sbjct: 27812 gtccttcggcgaggacggtccggt 27835 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,399,187 Number of Sequences: 3902068 Number of extensions: 2399187 Number of successful extensions: 52249 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51821 Number of HSP's gapped (non-prelim): 428 length of query: 469 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 447 effective length of database: 17,147,199,772 effective search space: 7664798298084 effective search space used: 7664798298084 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
