ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl53g08 |
|---|---|
| Clone Library Name | barley_pub |
>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 58.5 bits (140), Expect = 6e-09 Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 9/74 (12%) Frame = +3 Query: 231 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGV---------DEPFAW 383 RG VK V SG +++ G + PPE+ I LS + A LARR V DEP+A+ Sbjct: 21 RGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAVAQPDAKDTPDEPWAF 80 Query: 384 ESREFLRKLCVGKE 425 +REFLRK +GKE Sbjct: 81 PAREFLRKKLIGKE 94 Score = 32.3 bits (72), Expect = 0.48 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 10/73 (13%) Frame = +3 Query: 237 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGVDE----------PFAWE 386 KV V + D +++ K K+I LS + PRL D+ P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401 Query: 387 SREFLRKLCVGKE 425 +REFLRK +GK+ Sbjct: 402 AREFLRKKLIGKK 414
>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 58.2 bits (139), Expect = 8e-09 Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 15/93 (16%) Frame = +3 Query: 192 AIMASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR 353 A A ++G+SG RG VK V SG +++ G + PPE+ I LS + A LAR Sbjct: 2 ASSAQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLAR 61 Query: 354 RGGV---------DEPFAWESREFLRKLCVGKE 425 R DEP+A+ +REFLRK +GKE Sbjct: 62 RAAATQPDGKDTPDEPWAFPAREFLRKKLIGKE 94 Score = 31.6 bits (70), Expect = 0.81 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 10/73 (13%) Frame = +3 Query: 237 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR----------RGGVDEPFAWE 386 KV V + D +++ K K+I LS + PRL R D P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGDNIQDKNKKLRPLYDIPYMFE 401 Query: 387 SREFLRKLCVGKE 425 +REFLRK +GK+ Sbjct: 402 AREFLRKKLIGKK 414
>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (SND p102) (p105 coactivator) Length = 909 Score = 57.8 bits (138), Expect = 1e-08 Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 15/90 (16%) Frame = +3 Query: 201 ASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGG 362 A ++G+SG RG VK V SG +++ G + PPE+ I LS + A LARR Sbjct: 4 AQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAA 63 Query: 363 V---------DEPFAWESREFLRKLCVGKE 425 DEP+A+ +REFLRK +GKE Sbjct: 64 ATQPDGKDTPDEPWAFPAREFLRKKLIGKE 93 Score = 31.6 bits (70), Expect = 0.81 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 10/73 (13%) Frame = +3 Query: 237 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR----------RGGVDEPFAWE 386 KV V + D +++ K K+I LS + PRL R D P+ +E Sbjct: 345 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGDNIQDKNKKLRPLYDIPYMFE 400 Query: 387 SREFLRKLCVGKE 425 +REFLRK +GK+ Sbjct: 401 AREFLRKKLIGKK 413
>SND1_BRARE (Q7ZT42) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (4SNc-Tudor domain protein) Length = 897 Score = 57.4 bits (137), Expect = 1e-08 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 9/86 (10%) Frame = +3 Query: 195 IMASNTGASGWLRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRG----- 359 + +S A RG VK V SG +++ G + PPE+ I LS + A LARR Sbjct: 9 VQSSQASAPQLQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGALARRAIQGQP 68 Query: 360 ----GVDEPFAWESREFLRKLCVGKE 425 DEP+A+++REF+RK +GKE Sbjct: 69 DTKDTPDEPWAFQAREFMRKKVIGKE 94 Score = 31.6 bits (70), Expect = 0.81 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 11/74 (14%) Frame = +3 Query: 237 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR-----------RGGVDEPFAW 383 KV V + D +++ K K+I LS + PRL R D P+ + Sbjct: 347 KVMQVVNADAIVV----KLNSGEYKTIHLSSIRPPRLEGEEKNKDKDKRFRPLYDIPYMF 402 Query: 384 ESREFLRKLCVGKE 425 E+REFLRK +GK+ Sbjct: 403 EAREFLRKKLIGKK 416
>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (EBNA2 coactivator p100) Length = 910 Score = 56.6 bits (135), Expect = 2e-08 Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 9/74 (12%) Frame = +3 Query: 231 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGV---------DEPFAW 383 RG +K V SG +++ G + PPE+ I LS + A LARR DEP+A+ Sbjct: 21 RGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAF 80 Query: 384 ESREFLRKLCVGKE 425 +REFLRK +GKE Sbjct: 81 PAREFLRKKLIGKE 94 Score = 32.3 bits (72), Expect = 0.48 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 10/73 (13%) Frame = +3 Query: 237 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGVDE----------PFAWE 386 KV V + D +++ K K+I LS + PRL D+ P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401 Query: 387 SREFLRKLCVGKE 425 +REFLRK +GK+ Sbjct: 402 AREFLRKKLIGKK 414
>CRTE_RHOCA (P17060) Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)| (GGPP synthetase) (Farnesyltranstransferase) Length = 289 Score = 28.1 bits (61), Expect = 9.0 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = +3 Query: 246 AVTSGDCLLIMG----STKAEIPPEKSITLSYLMAPRLARRGGVDEPFAWES 389 AV +GD LLI G + + P++++ L + RGG+ AWES Sbjct: 106 AVLAGDSLLIRGFEVLADVGAVNPDRALKLISKLGQLSGARGGICAGQAWES 157 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,098,492 Number of Sequences: 219361 Number of extensions: 986280 Number of successful extensions: 2745 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 2683 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2740 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
