ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl53g08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466019.1| Oryza sativa (japonica cultivar-group), mRNA 252 8e-64
2gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA bindin... 252 8e-64
3dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clon... 252 8e-64
4gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA bindin... 145 1e-31
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 145 1e-31
6dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic D... 145 1e-31
7dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic D... 145 1e-31
8ref|NM_125572.2| Arabidopsis thaliana nuclease/ nucleic acid bin... 74 4e-10
9gb|BT013149.1| Lycopersicon esculentum clone 134149F, mRNA sequence 74 4e-10
10gb|BT002044.1| Arabidopsis thaliana 100 kDa coactivator - like p... 74 4e-10
11dbj|AB010069.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 68 3e-08
12ref|NM_120817.2| Arabidopsis thaliana nuclease/ nucleic acid bin... 66 1e-07
13gb|AC139708.15| Medicago truncatula clone mth2-9f16, complete se... 66 1e-07
14gb|AY064975.1| Arabidopsis thaliana AT5g07350/T2I1_60 mRNA, comp... 66 1e-07
15gb|AY350714.1| Olimarabidopsis pumila clone BAC Op37I22, complet... 60 6e-06
16emb|AL163912.1|ATT2I1 Arabidopsis thaliana DNA chromosome 5, BAC... 60 6e-06
17dbj|AB078603.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor... 58 2e-05
18dbj|AB078602.1| Pisum sativum mRNA for 110kDa protein HMP, parti... 58 2e-05
19dbj|AP004932.1| Lotus japonicus genomic DNA, chromosome 1, clone... 52 0.002
20gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic m... 44 0.37
21emb|Z22179.1|CEF58A4 Caenorhabditis elegans Cosmid F58A4, comple... 42 1.4
22emb|AJ632310.1| Cotesia congregata virus complete genome, segmen... 42 1.4
23ref|NM_066724.2| Caenorhabditis elegans F58A4.5 (F58A4.5) mRNA, ... 42 1.4
24gb|AY651828.1| Cotesia plutellae polydnavirus segment CpBV-S30, ... 42 1.4
25gb|AC097832.7| Rattus norvegicus 11 BAC CH230-68C19 (Children's ... 40 5.7
26gb|AC125265.8| Mus musculus chromosome 6, clone RP24-444K24, com... 40 5.7
27gb|DQ072581.1| Bos taurus pyruvate carboxylase (PC) gene, partia... 40 5.7
28gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide... 40 5.7
29emb|AL359554.7| Human DNA sequence from clone RP4-639P13 on chro... 40 5.7
30gb|AC159505.7| Mus musculus 6 BAC RP23-81D20 (Roswell Park Cance... 40 5.7
31gb|AC093429.2| Homo sapiens chromosome 1 clone RP11-465K1, compl... 40 5.7
32gb|AC098857.3| Homo sapiens BAC clone RP11-115I12 from 2, comple... 40 5.7
33emb|BX649319.8| Zebrafish DNA sequence from clone DKEYP-88E3 in ... 40 5.7
34gb|AC153902.4| Mus musculus 6 BAC RP23-5K15 (Roswell Park Cancer... 40 5.7
35dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 5.7 
>ref|XM_466019.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3549

 Score =  252 bits (127), Expect = 8e-64
 Identities = 195/217 (89%), Gaps = 3/217 (1%)
 Strand = Plus / Plus

                                                                       
Query: 213 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 272
           ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 237 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 296

                                                                       
Query: 273 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 329
           |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 297 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 356

                                                                       
Query: 330 cttatggccccaaggctggctcgtcgtggtggagtcgatgagccatttgcttgggaaagc 389
           || |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct: 357 ctcatggccccaaggctggctcgccgtggtggagtggatgaaccatttgcttgggaaagc 416

                                                
Query: 390 agggagtttctgaggaaactttgcgtaggaaaggagg 426
           ||||||||||| |||||||| ||| ||||||||||||
Sbjct: 417 agggagtttctaaggaaactctgcataggaaaggagg 453
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>gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120
           mRNA, complete cds
          Length = 2961

 Score =  252 bits (127), Expect = 8e-64
 Identities = 195/217 (89%), Gaps = 3/217 (1%)
 Strand = Plus / Plus

                                                                       
Query: 213 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 272
           ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 16  ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 75

                                                                       
Query: 273 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 329
           |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 76  atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 135

                                                                       
Query: 330 cttatggccccaaggctggctcgtcgtggtggagtcgatgagccatttgcttgggaaagc 389
           || |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct: 136 ctcatggccccaaggctggctcgccgtggtggagtggatgaaccatttgcttgggaaagc 195

                                                
Query: 390 agggagtttctgaggaaactttgcgtaggaaaggagg 426
           ||||||||||| |||||||| ||| ||||||||||||
Sbjct: 196 agggagtttctaaggaaactctgcataggaaaggagg 232
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>dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J15, full
           insert sequence
          Length = 3547

 Score =  252 bits (127), Expect = 8e-64
 Identities = 195/217 (89%), Gaps = 3/217 (1%)
 Strand = Plus / Plus

                                                                       
Query: 213 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 272
           ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 237 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 296

                                                                       
Query: 273 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 329
           |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 297 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 356

                                                                       
Query: 330 cttatggccccaaggctggctcgtcgtggtggagtcgatgagccatttgcttgggaaagc 389
           || |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct: 357 ctcatggccccaaggctggctcgccgtggtggagtggatgaaccatttgcttgggaaagc 416

                                                
Query: 390 agggagtttctgaggaaactttgcgtaggaaaggagg 426
           ||||||||||| |||||||| ||| ||||||||||||
Sbjct: 417 agggagtttctaaggaaactctgcataggaaaggagg 453
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>gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120
           gene, complete cds
          Length = 5478

 Score =  145 bits (73), Expect = 1e-31
 Identities = 123/139 (88%), Gaps = 3/139 (2%)
 Strand = Plus / Plus

                                                                       
Query: 213 ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 272
           ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 45  ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 104

                                                                       
Query: 273 atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 329
           |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 105 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 164

                              
Query: 330 cttatggccccaaggctgg 348
           || ||||||||||||||||
Sbjct: 165 ctcatggccccaaggctgg 183



 Score =  105 bits (53), Expect = 1e-19
 Identities = 71/77 (92%)
 Strand = Plus / Plus

                                                                       
Query: 347 ggctcgtcgtggtggagtcgatgagccatttgcttgggaaagcagggagtttctgaggaa 406
           |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 541 ggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaa 600

                            
Query: 407 actttgcgtaggaaagg 423
           ||| ||| |||||||||
Sbjct: 601 actctgcataggaaagg 617
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  145 bits (73), Expect = 1e-31
 Identities = 123/139 (88%), Gaps = 3/139 (2%)
 Strand = Plus / Minus

                                                                            
Query: 213      ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 272
                ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 19123886 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 19123827

                                                                            
Query: 273      atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 329
                |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 19123826 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 19123767

                                   
Query: 330      cttatggccccaaggctgg 348
                || ||||||||||||||||
Sbjct: 19123766 ctcatggccccaaggctgg 19123748



 Score =  105 bits (53), Expect = 1e-19
 Identities = 71/77 (92%)
 Strand = Plus / Minus

                                                                            
Query: 347      ggctcgtcgtggtggagtcgatgagccatttgcttgggaaagcagggagtttctgaggaa 406
                |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 19123390 ggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaa 19123331

                                 
Query: 407      actttgcgtaggaaagg 423
                ||| ||| |||||||||
Sbjct: 19123330 actctgcataggaaagg 19123314
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>dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0415B12
          Length = 157419

 Score =  145 bits (73), Expect = 1e-31
 Identities = 123/139 (88%), Gaps = 3/139 (2%)
 Strand = Plus / Minus

                                                                         
Query: 213   ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 272
             ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 22135 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 22076

                                                                         
Query: 273   atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 329
             |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 22075 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 22016

                                
Query: 330   cttatggccccaaggctgg 348
             || ||||||||||||||||
Sbjct: 22015 ctcatggccccaaggctgg 21997



 Score =  105 bits (53), Expect = 1e-19
 Identities = 71/77 (92%)
 Strand = Plus / Minus

                                                                         
Query: 347   ggctcgtcgtggtggagtcgatgagccatttgcttgggaaagcagggagtttctgaggaa 406
             |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 21639 ggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaa 21580

                              
Query: 407   actttgcgtaggaaagg 423
             ||| ||| |||||||||
Sbjct: 21579 actctgcataggaaagg 21563
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>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0047A17
          Length = 149142

 Score =  145 bits (73), Expect = 1e-31
 Identities = 123/139 (88%), Gaps = 3/139 (2%)
 Strand = Plus / Minus

                                                                          
Query: 213    ggagcttcaggatggctaaggggcaaggtgaaggctgtgacttctggggactgccttctc 272
              ||||| || |||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 129407 ggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctc 129348

                                                                          
Query: 273    atcatggggagcaccaaggcagagatc---ccgccagagaagtccatcactctgtcatac 329
              |||||||||||||||||||| ||  ||   ||||| |||||||| || ||||||||||||
Sbjct: 129347 atcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatac 129288

                                 
Query: 330    cttatggccccaaggctgg 348
              || ||||||||||||||||
Sbjct: 129287 ctcatggccccaaggctgg 129269



 Score =  105 bits (53), Expect = 1e-19
 Identities = 71/77 (92%)
 Strand = Plus / Minus

                                                                          
Query: 347    ggctcgtcgtggtggagtcgatgagccatttgcttgggaaagcagggagtttctgaggaa 406
              |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 128911 ggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaa 128852

                               
Query: 407    actttgcgtaggaaagg 423
              ||| ||| |||||||||
Sbjct: 128851 actctgcataggaaagg 128835
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>ref|NM_125572.2| Arabidopsis thaliana nuclease/ nucleic acid binding AT5G61780 mRNA,
           complete cds
          Length = 3552

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                       
Query: 366 gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaaggag 425
           |||||||| ||||| |||||||||||||||||||| ||||| |||||| | |||||||||
Sbjct: 444 gatgagccttttgcatgggaaagcagggagtttctaaggaagctttgcattggaaaggag 503

            
Query: 426 g 426
           |
Sbjct: 504 g 504
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>gb|BT013149.1| Lycopersicon esculentum clone 134149F, mRNA sequence
          Length = 3381

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 70/81 (86%)
 Strand = Plus / Plus

                                                                       
Query: 346 tggctcgtcgtggtggagtcgatgagccatttgcttgggaaagcagggagtttctgagga 405
           |||| |||||||||||||| |||||||||||||| ||| ||||||| || ||  ||||||
Sbjct: 319 tggcacgtcgtggtggagtggatgagccatttgcatggcaaagcagagacttcttgagga 378

                                
Query: 406 aactttgcgtaggaaaggagg 426
           | |||||| | ||||||||||
Sbjct: 379 agctttgcattggaaaggagg 399
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>gb|BT002044.1| Arabidopsis thaliana 100 kDa coactivator - like protein (At5g61780)
           mRNA, complete cds
          Length = 3538

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                       
Query: 366 gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaaggag 425
           |||||||| ||||| |||||||||||||||||||| ||||| |||||| | |||||||||
Sbjct: 445 gatgagccttttgcatgggaaagcagggagtttctaaggaagctttgcattggaaaggag 504

            
Query: 426 g 426
           |
Sbjct: 505 g 505
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>dbj|AB010069.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAC9
          Length = 57246

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                       
Query: 366   gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaagg 423
             |||||||| ||||| |||||||||||||||||||| ||||| |||||| | |||||||
Sbjct: 27733 gatgagccttttgcatgggaaagcagggagtttctaaggaagctttgcattggaaagg 27790
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>ref|NM_120817.2| Arabidopsis thaliana nuclease/ nucleic acid binding AT5G07350 mRNA,
           complete cds
          Length = 3397

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                       
Query: 366 gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaaggag 425
           |||||||| ||||| ||||||||||  || ||| |||||||||||||| |||||||||||
Sbjct: 330 gatgagccttttgcatgggaaagcaaagaatttttgaggaaactttgcataggaaaggag 389

            
Query: 426 g 426
           |
Sbjct: 390 g 390
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>gb|AC139708.15| Medicago truncatula clone mth2-9f16, complete sequence
          Length = 117358

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                          
Query: 347    ggctcgtcgtggtggagtcgatgagccatttgcttgggaaagcagggagtttctgaggaa 406
              ||||||| | ||||| |||||||| |||||||| |||||||| || ||||||||||||||
Sbjct: 103351 ggctcgtagaggtggtgtcgatgaaccatttgcatgggaaagtagagagtttctgaggaa 103292

                   
Query: 407    acttt 411
               ||||
Sbjct: 103291 gcttt 103287
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>gb|AY064975.1| Arabidopsis thaliana AT5g07350/T2I1_60 mRNA, complete cds
          Length = 3397

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                       
Query: 366 gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaaggag 425
           |||||||| ||||| ||||||||||  || ||| |||||||||||||| |||||||||||
Sbjct: 330 gatgagccttttgcatgggaaagcaaagaatttttgaggaaactttgcataggaaaggag 389

            
Query: 426 g 426
           |
Sbjct: 390 g 390
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>gb|AY350714.1| Olimarabidopsis pumila clone BAC Op37I22, complete sequence
          Length = 84869

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                      
Query: 366  gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaagg 423
            |||||||| ||||| |||||||||| ||| ||| |||||||||||||| | |||||||
Sbjct: 8643 gatgagccttttgcatgggaaagcaaggaatttttgaggaaactttgcattggaaagg 8586
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>emb|AL163912.1|ATT2I1 Arabidopsis thaliana DNA chromosome 5, BAC clone T2I1 (ESSA project)
          Length = 116763

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                       
Query: 366   gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaagg 423
             |||||||| ||||| ||||||||||  || ||| |||||||||||||| |||||||||
Sbjct: 39695 gatgagccttttgcatgggaaagcaaagaatttttgaggaaactttgcataggaaagg 39638
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>dbj|AB078603.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor domain protein,
           complete cds
          Length = 3379

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                    
Query: 357 ggtggagtcgatgagccatttgcttgggaaagcagggagtttctgaggaaactttgc 413
           ||||| || |||||| ||||||| |||||||| || |||||||||||||| ||||||
Sbjct: 366 ggtggtgttgatgaggcatttgcatgggaaagtagagagtttctgaggaagctttgc 422



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 237 aaggtgaaggctgtgacttctggggactgc 266
           |||||||||||||| |||||||||||||||
Sbjct: 237 aaggtgaaggctgttacttctggggactgc 266
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>dbj|AB078602.1| Pisum sativum mRNA for 110kDa protein HMP, partial cds
          Length = 1339

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                    
Query: 357 ggtggagtcgatgagccatttgcttgggaaagcagggagtttctgaggaaactttgc 413
           ||||| || |||||| ||||||| |||||||| || |||||||||||||| ||||||
Sbjct: 366 ggtggtgttgatgaggcatttgcatgggaaagtagagagtttctgaggaagctttgc 422



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 237 aaggtgaaggctgtgacttctggggactgc 266
           |||||||||||||| |||||||||||||||
Sbjct: 237 aaggtgaaggctgttacttctggggactgc 266
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>dbj|AP004932.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT10J03, TM0094a,
             complete sequence
          Length = 65557

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 366   gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaagg 423
             ||||| |||||||| ||||||||||| |||| ||||||||| || ||| |||| ||||
Sbjct: 54104 gatgaaccatttgcatgggaaagcagagagtatctgaggaagctctgcatagggaagg 54047



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 366   gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaagg 423
             ||||| |||||||| ||||||||||| |||| ||||||||| || ||| |||| ||||
Sbjct: 38111 gatgaaccatttgcatgggaaagcagagagtatctgaggaagctctgcatagggaagg 38054



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 366   gatgagccatttgcttgggaaagcagggagtttctgaggaaactttgcgtaggaaagg 423
             ||||| |||||||| ||||||||||| |||| ||||||||| || ||| |||| ||||
Sbjct: 25201 gatgaaccatttgcatgggaaagcagagagtatctgaggaagctctgcatagggaagg 25144
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>gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic monensin biosynthesis
             gene cluster, partial sequence
          Length = 103450

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 98    aggcggaggccgctcgccgccg 119
             ||||||||||||||||||||||
Sbjct: 60057 aggcggaggccgctcgccgccg 60036
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>emb|Z22179.1|CEF58A4 Caenorhabditis elegans Cosmid F58A4, complete sequence
          Length = 38000

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 176  tcgcttcctcgccggtgctatcatggcat 204
            ||||||| ||||||||||| |||||||||
Sbjct: 9623 tcgcttcttcgccggtgctctcatggcat 9651
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>emb|AJ632310.1| Cotesia congregata virus complete genome, segment Circle7
          Length = 24748

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 345   ctggctcgtcgtggtggagtc 365
             |||||||||||||||||||||
Sbjct: 16499 ctggctcgtcgtggtggagtc 16519
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>ref|NM_066724.2| Caenorhabditis elegans F58A4.5 (F58A4.5) mRNA, complete cds
          Length = 2449

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 176 tcgcttcctcgccggtgctatcatggcat 204
           ||||||| ||||||||||| |||||||||
Sbjct: 531 tcgcttcttcgccggtgctctcatggcat 503
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>gb|AY651828.1| Cotesia plutellae polydnavirus segment CpBV-S30, complete sequence
          Length = 23535

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 345   ctggctcgtcgtggtggagtc 365
             |||||||||||||||||||||
Sbjct: 14723 ctggctcgtcgtggtggagtc 14703
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>gb|AC097832.7| Rattus norvegicus 11 BAC CH230-68C19 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 262323

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 393   gagtttctgaggaaactttg 412
             ||||||||||||||||||||
Sbjct: 97730 gagtttctgaggaaactttg 97749
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>gb|AC125265.8| Mus musculus chromosome 6, clone RP24-444K24, complete sequence
          Length = 156056

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 303    ccagagaagtccatcactct 322
              ||||||||||||||||||||
Sbjct: 148918 ccagagaagtccatcactct 148937
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>gb|DQ072581.1| Bos taurus pyruvate carboxylase (PC) gene, partial sequence
          Length = 8390

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 373  catttgcttgggaaagcagg 392
            ||||||||||||||||||||
Sbjct: 7409 catttgcttgggaaagcagg 7428
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>gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide antibiotic A54145
             biosynthetic gene cluster, complete sequence
          Length = 126933

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    ggcggaggccgctcgccgcc 118
             ||||||||||||||||||||
Sbjct: 32744 ggcggaggccgctcgccgcc 32763
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>emb|AL359554.7| Human DNA sequence from clone RP4-639P13 on chromosome 1p21.3-22.3
             Contains ESTs, STSs, GSSs and a CpG island. Contains part
             of a novel gene for a protein similar to rat
             transporter-like protein (CTL1) and the CNN3 gene for two
             isoforms of acidic calponin 3, complete sequence
          Length = 106277

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 385   aaagcagggagtttctgaggaaac 408
             |||||||| |||||||||||||||
Sbjct: 27652 aaagcaggcagtttctgaggaaac 27629
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>gb|AC159505.7| Mus musculus 6 BAC RP23-81D20 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 254457

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 303   ccagagaagtccatcactct 322
             ||||||||||||||||||||
Sbjct: 18393 ccagagaagtccatcactct 18374
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>gb|AC093429.2| Homo sapiens chromosome 1 clone RP11-465K1, complete sequence
          Length = 182165

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 385   aaagcagggagtttctgaggaaac 408
             |||||||| |||||||||||||||
Sbjct: 56221 aaagcaggcagtttctgaggaaac 56244
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>gb|AC098857.3| Homo sapiens BAC clone RP11-115I12 from 2, complete sequence
          Length = 80506

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 394   agtttctgaggaaactttgc 413
             ||||||||||||||||||||
Sbjct: 33555 agtttctgaggaaactttgc 33536
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>emb|BX649319.8| Zebrafish DNA sequence from clone DKEYP-88E3 in linkage group 20,
           complete sequence
          Length = 108164

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 385 aaagcagggagtttctgagg 404
           ||||||||||||||||||||
Sbjct: 303 aaagcagggagtttctgagg 284
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>gb|AC153902.4| Mus musculus 6 BAC RP23-5K15 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 208717

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 303   ccagagaagtccatcactct 322
             ||||||||||||||||||||
Sbjct: 66033 ccagagaagtccatcactct 66052
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 134     gagaccgcccgccgccggcg 153
               ||||||||||||||||||||
Sbjct: 2633891 gagaccgcccgccgccggcg 2633872


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,740,741
Number of Sequences: 3902068
Number of extensions: 3740741
Number of successful extensions: 78610
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78410
Number of HSP's gapped (non-prelim): 196
length of query: 426
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 404
effective length of database: 17,147,199,772
effective search space: 6927468707888
effective search space used: 6927468707888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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