>SC23A_MOUSE (Q01405) Protein transport protein Sec23A (SEC23-related protein A)|
          Length = 765

 Score = 66.2 bits (160), Expect = 4e-11
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
 Frame = +1

Query: 250 MSEFLEL----EARDGVRMTWNVIPGTKQDAASCVVPVSTMYTPLNPNPAIPVLPYAPLR 417
           M+ +LE     E RDGVR +WNV P ++ +A   VVPV+ ++TPL   P +P + Y P+ 
Sbjct: 1   MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVL 60

Query: 418 C--RICRAILNP 447
           C    CRA+LNP
Sbjct: 61  CSRTTCRAVLNP 72

>SC23A_HUMAN (Q15436) Protein transport protein Sec23A (SEC23-related protein A)|
          Length = 765

 Score = 66.2 bits (160), Expect = 4e-11
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
 Frame = +1

Query: 250 MSEFLEL----EARDGVRMTWNVIPGTKQDAASCVVPVSTMYTPLNPNPAIPVLPYAPLR 417
           M+ +LE     E RDGVR +WNV P ++ +A   VVPV+ ++TPL   P +P + Y P+ 
Sbjct: 1   MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVL 60

Query: 418 C--RICRAILNP 447
           C    CRA+LNP
Sbjct: 61  CSRTTCRAVLNP 72

>SEC23_YEAST (P15303) Protein transport protein SEC23|
          Length = 768

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 32/67 (47%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
 Frame = +1

Query: 256 EFLELEARDGVRMTWNVIPGTKQDAASCVVPVSTMYTPLNPNPAIPVLPYAPLRCR--IC 429
           +F   E  +GVR TWNV P T+ DA S VVPV  +YTPL     + V PY P+ C    C
Sbjct: 2   DFETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPYNPVVCSGPHC 61

Query: 430 RAILNPF 450
           ++ILNP+
Sbjct: 62  KSILNPY 68

>SC23B_MOUSE (Q9D662) Protein transport protein Sec23B (SEC23-related protein B)|
          Length = 767

 Score = 62.0 bits (149), Expect = 7e-10
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
 Frame = +1

Query: 250 MSEFLEL----EARDGVRMTWNVIPGTKQDAASCVVPVSTMYTPLNPNPAIPVLPYAPLR 417
           M+ +LE     E RDGVR +WNV P ++ +A   VVP++ + TPL   P +P + Y P+ 
Sbjct: 1   MATYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPLACLLTPLKERPDLPPVQYEPVL 60

Query: 418 CR--ICRAILNP 447
           C    C+AILNP
Sbjct: 61  CSRPTCKAILNP 72

>SC23B_HUMAN (Q15437) Protein transport protein Sec23B (SEC23-related protein B)|
          Length = 767

 Score = 61.6 bits (148), Expect = 9e-10
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 6/72 (8%)
 Frame = +1

Query: 250 MSEFLEL----EARDGVRMTWNVIPGTKQDAASCVVPVSTMYTPLNPNPAIPVLPYAPLR 417
           M+ +LE     E RDGVR +WNV P ++ +A   VVP++ + TPL   P +P + Y P+ 
Sbjct: 1   MATYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPLACLLTPLKERPDLPPVQYEPVL 60

Query: 418 CR--ICRAILNP 447
           C    C+A+LNP
Sbjct: 61  CSRPTCKAVLNP 72

>SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100|
          Length = 1038

 Score = 35.0 bits (79), Expect = 0.088
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
 Frame = +1

Query: 286 VRMTWNVIPGTKQDAASCVVPVSTMYTPLNPNPA---IPVLPYAP---LRCRICRAILNP 447
           +R+T + IP ++  A+   +P+  +  PL   P    +P++ +     +RCR CR  +NP
Sbjct: 321 LRLTTSAIPNSQSLASRWHLPLGAVVCPLAETPEGEEVPLIDFGSTGIIRCRRCRTYVNP 380

Query: 448 F 450
           F
Sbjct: 381 F 381

>SC24C_HUMAN (P53992) Protein transport protein Sec24C (SEC24-related protein C)|
          Length = 1094

 Score = 33.5 bits (75), Expect = 0.26
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
 Frame = +1

Query: 286 VRMTWNVIPGTKQDAASCVVPVSTMYTPLNPNPAIPVLPYA-------PLRCRICRAILN 444
           +R T   IP T   A    VP++ +  PL   P     PY        PLRC  C+A + 
Sbjct: 374 IRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESGPLRCNRCKAYMC 433

Query: 445 PF 450
           PF
Sbjct: 434 PF 435

>SFB3_YEAST (P38810) SED5-binding protein 3 (SEC24-related protein 3) (Lethal|
           with SEC13 protein 1)
          Length = 929

 Score = 32.7 bits (73), Expect = 0.44
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
 Frame = +1

Query: 307 IPGTKQDAASCVVPVSTMYTP---LNPNPA-IPVLPY----APLRCRICRAILNP 447
           IP ++   A+  +P+     P   L PN A +P +P      PLRCR CRA  NP
Sbjct: 175 IPESEHLRAATKLPLGLTIQPFSTLTPNDAEVPTIPLPMDGTPLRCRRCRAYANP 229

>SC24B_HUMAN (O95487) Protein transport protein Sec24B (SEC24-related protein B)|
          Length = 1268

 Score = 32.3 bits (72), Expect = 0.57
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +1

Query: 280 DGVRMTWNVIPGTKQDAASCVVPVSTMYTPLNPNPAIPVLPYAPL-RCRICRAILNPF 450
           D  R T   IP T+       +P+  +  P      +PV+    + RCR CR  +NPF
Sbjct: 558 DSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLTQLPVITSNTIVRCRSCRTYINPF 615

>SC24A_HUMAN (O95486) Protein transport protein Sec24A (SEC24-related protein A)|
           (Fragment)
          Length = 1078

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 289 RMTWNVIPGTKQDAASCVVPVSTMYTPLNPNPAIPVLPYAPL-RCRICRAILNPF 450
           R T   IP T+       +P+  +  P      +PV+  + + RCR CR  +NPF
Sbjct: 372 RCTLTSIPQTQALLNKAKLPLGLLLHPFKDLVQLPVVTSSTIVRCRSCRTYINPF 426

>PDZK7_HUMAN (Q9H5P4) PDZ domain-containing protein 7|
          Length = 517

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 261 PGTRGPGWGKDDLECDTGHQAG 326
           PG+RGPGWG+ D    T   AG
Sbjct: 356 PGSRGPGWGRADTAMQTEPDAG 377

>PDZK7_PONPY (Q5RBI7) PDZ domain-containing protein 7|
          Length = 528

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 261 PGTRGPGWGKDDLECDTGHQAG 326
           PG+RGPGWG+ D    T   AG
Sbjct: 356 PGSRGPGWGRADTAMQTEPDAG 377

>SC24A_MOUSE (Q3U2P1) Protein transport protein Sec24A (SEC24-related protein A)|
          Length = 1090

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 289 RMTWNVIPGTKQDAASCVVPVSTMYTPLNPNPAIPVLPYAPL-RCRICRAILNPF 450
           R T   +P T+       +P+  +  P      +PV+  + + RCR CR  +NPF
Sbjct: 384 RCTLTSVPQTQALLNKAKLPLGLLLHPFKDLVQLPVVTSSTIVRCRSCRTYINPF 438

>FRS3_RAT (Q52RG8) Fibroblast growth factor receptor substrate 3 (FGFR|
           substrate 3) (Suc1-associated neurotrophic factor target
           2) (SNT-2) (FGFR signalling adaptor SNT2)
          Length = 491

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = -2

Query: 313 PVSHSRSSLPHPGPRVPGTQTLILCDQVAQT*FLG*TLGPRD-----SIRPPPEAR 161
           P   S SSL HP P    TQTLI  D+ + T ++    G  D      ++P PE R
Sbjct: 162 PRRPSTSSLRHPSPGEESTQTLIASDEQSHT-YVNTPTGEEDRRSRHCLQPLPEGR 216

>HXABA_BRARE (Q9DDU0) Homeobox protein Hox-A11a|
          Length = 284

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 66  SSPAPAPEKRSTGQASPHPPKPRHLQGEDQQLRASGGGLILSRGPR 203
           S+PAPAPE++  G+  P    P    G +++ + SG     + GPR
Sbjct: 171 STPAPAPEQQPEGKERPETSSPESSSGNNEE-KTSGA----NSGPR 211

>YNB3_SCHPO (Q9USS7) Hypothetical protein C4.03c in chromosome II|
          Length = 891

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
 Frame = +1

Query: 286 VRMTWNVIPGTKQDAASCVVPVSTMYTP---LNPNPA-IPVLPYA---PLRCRICRAILN 444
           V+ T   IP T     +  +P+  +  P   L P+ A +PV+      P RC+ CR  +N
Sbjct: 165 VQFTSYAIPATNDVCNASGIPLGMIVQPFAELRPDEAPVPVVDNTNSNPPRCKKCRGYIN 224

Query: 445 PF 450
           PF
Sbjct: 225 PF 226

>PER2_ARAHY (P22196) Cationic peroxidase 2 precursor (EC 1.11.1.7) (PNPC2)|
          Length = 330

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 24/78 (30%), Positives = 36/78 (46%)
 Frame = -1

Query: 398 RTGMAGLGFRGVYMVETGTTQLAASCLVPGITFQVILTPSRASSSRNSDIDSL*SGCSNL 219
           +T  A LG RG  +++   TQL A+C  PG+   V      A ++R+S +       S  
Sbjct: 92  KTAFANLGLRGYEIIDDAKTQLEAAC--PGV---VSCADILALAARDSVV------LSGG 140

Query: 218 ISWIDPRSSRQYQASTRS 165
           +SW  P   R  + S  S
Sbjct: 141 LSWQVPTGRRDGRVSQAS 158

>IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B (eIF-4B)|
          Length = 611

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 72  PAPAPEKRSTGQASPHPPKPRHLQGEDQQLRASGGGLILSRGP 200
           PAP P++ +  + S +PP        +QQ   SGGG +    P
Sbjct: 475 PAPPPKENAWVKRSSNPPARSQSSDTEQQSPTSGGGKVAPAQP 517

>FXL19_HUMAN (Q6PCT2) F-box/LRR-repeat protein 19 (F-box and leucine-rich repeat|
           protein 19)
          Length = 674

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +3

Query: 78  PAPEKRSTGQASPHPPKPRH--LQGEDQQLRASGGGLILSRG 197
           P P KR   +A   PP PR     G ++ L+  GG   L RG
Sbjct: 189 PGPPKRKEREAGNEPPTPRKKVKGGRERHLKKVGGDACLLRG 230

>YIY8_SCHPO (Q9UUI5) Hypothetical protein C22F8.08 in chromosome I|
          Length = 926

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +1

Query: 286 VRMTWNVIPGTKQDAASCVVPVSTMYTP----LNPNPAIPVLPYAPL-RCRICRAILNPF 450
           VR T N +P T        +P + +  P    +  +  +PV+    + RCR CR  +NPF
Sbjct: 207 VRSTINCVPTTNSLLKKSKIPFALVIRPYTSLVEEDDPVPVVTDTIISRCRRCRMYINPF 266

>IL6RB_MOUSE (Q00560) Interleukin-6 receptor beta chain precursor (IL-6R-beta)|
           (Interleukin 6 signal transducer) (Membrane glycoprotein
           130) (gp130) (CD130 antigen)
          Length = 917

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 54  RKHLSSPAPAPEKRSTGQASPHPPKPRHLQGEDQQLRASG 173
           +KH+    P P K    Q SPH P PRH      Q+ + G
Sbjct: 646 KKHIWPNVPDPSKSHIAQWSPHTP-PRHNFNSKDQMYSDG 684

>IL6RB_HUMAN (P40189) Interleukin-6 receptor beta chain precursor (IL-6R-beta)|
           (Interleukin 6 signal transducer) (Membrane glycoprotein
           130) (gp130) (Oncostatin M receptor) (CD130 antigen)
           (CDw130)
          Length = 918

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 54  RKHLSSPAPAPEKRSTGQASPHPPKPRHLQGEDQQLRASG 173
           +KH+    P P K    Q SPH P PRH      Q+ + G
Sbjct: 648 KKHIWPNVPDPSKSHIAQWSPHTP-PRHNFNSKDQMYSDG 686

>ZN692_MOUSE (Q3U381) Zinc finger protein 692|
          Length = 531

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = +3

Query: 258 VPGTRGPGWGKDDL--ECDTGH 317
           VPG RGPG G+ +L  EC  GH
Sbjct: 96  VPGLRGPGGGEGELVWECSAGH 117

>HIS8_SYNY3 (P73807) Histidinol-phosphate aminotransferase (EC 2.6.1.9)|
           (Imidazole acetol-phosphate transaminase)
          Length = 349

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 63  LSSPAPAPEKRSTGQASPHPPKPRHLQGE 149
           L+ P   PE +    ASP+PPK +HL  E
Sbjct: 134 LTGPVICPEAKLIFLASPNPPKGKHLNRE 162

>Y1599_METJA (Q58994) Hypothetical protein MJ1599|
          Length = 277

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 324 LLGARYHIPGHPYPIPGLEFQELRH*FSVIRLLKP 220
           LLG +Y I GH  P      +E++    +IRLL P
Sbjct: 153 LLGLKYIITGHELPFGHSAIREMKEGIKMIRLLAP 187

>FGD1_MOUSE (P52734) FYVE, RhoGEF and PH domain-containing protein 1|
           (Faciogenital dysplasia 1 protein homolog) (Zinc finger
           FYVE domain-containing protein 3) (Rho/Rac guanine
           nucleotide exchange factor FGD1) (Rho/Rac GEF)
          Length = 960

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 63  LSSPAPAPEKRSTGQASPHPPKPRHLQ 143
           +  P P+P KR+ G     PPKP +LQ
Sbjct: 143 IPGPRPSPLKRAPGPKPQVPPKPSYLQ 169

>LCR72_ARATH (Q9ZUL8) Low-molecular-weight cysteine-rich protein LCR72 precursor|
          Length = 73

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = -2

Query: 175 PPEARSC*SSPWRWRGF----GGCGEACPVLLFSGAGAGEERCF 56
           P EAR+C S   +++G       C +ACP   FSG      RC+
Sbjct: 25  PVEARTCESPSNKFQGVCLNSQSCAKACPSEGFSGGRCSSLRCY 68

>VG03_ICHV1 (Q00115) Hypothetical gene 3 protein|
          Length = 302

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = +1

Query: 268 LEARDGVRMTWNVIPGTKQDAASCVVPV---STMYTPLNPNPAIPVLPYAPLRCRICRAI 438
           L  + G    WN  P +  D  +C +P    S + +P+NP P    +  APL       +
Sbjct: 170 LPPKSGSPTYWNPPPPSPSDDTTCEIPSLPSSLVSSPVNPAPMYSPVSDAPLNTPSPNMM 229

Query: 439 LNP 447
           + P
Sbjct: 230 ITP 232

>MAGI2_RAT (O88382) Membrane-associated guanylate kinase, WW and PDZ|
            domain-containing protein 2 (Membrane-associated
            guanylate kinase inverted 2) (MAGI-2)
            (Atrophin-1-interacting protein 1) (Synaptic scaffolding
            molecule) (S-SCAM)
          Length = 1277

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 54   RKHLSSPAPAPEKRSTGQASPHPPKPRHLQGEDQQLRA 167
            ++H     P+P   ++  A P PP+P  LQG +   R+
Sbjct: 1036 QQHSPLAQPSPATPNSPVAQPAPPQPLQLQGHENSYRS 1073

>HIS4_SYMTH (Q67KH9) 1-(5-phosphoribosyl)-5-[(5-|
           phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase (EC 5.3.1.16)
           (Phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase)
          Length = 249

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -3

Query: 201 SVLATVSGLHQKHGAVDLRLGGGAASADAGRPALCXXXXXXXXARRGVSGQV 46
           +V A V  L Q+H  V ++LGGG  + +A   AL             + G V
Sbjct: 67  AVRAIVEALRQRHPGVRVQLGGGLRTLEALEAALALGVSRAIIGTSALEGDV 118

>SEC24_YEAST (P40482) Protein transport protein Sec24 (Abnormal nuclear|
           morphology 1)
          Length = 926

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
 Frame = +1

Query: 232 PDHRESMSEFLELEARDGVRMTWNVIPG-------TKQDAASCVVPVSTMYTPLNPNPAI 390
           P  R  +   L   + D +R T N +P        +K      + P   +Y  ++P P  
Sbjct: 164 PPERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLN 223

Query: 391 PVLPYAPLRCRICRAILNPF 450
                  +RCR CR+ +NPF
Sbjct: 224 E--DGLIVRCRRCRSYMNPF 241

>RF1_SALTY (P0A287) Peptide chain release factor 1 (RF-1)|
          Length = 360

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 207 RPSVLATVSGLHQKHGAVDLRLGGGAASADAGR 109
           +PS++A +  LH++H  V   LG     AD  R
Sbjct: 2   KPSIVAKLEALHERHEEVQALLGDAGIIADQDR 34

>RF1_SALTI (P0A288) Peptide chain release factor 1 (RF-1)|
          Length = 360

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 207 RPSVLATVSGLHQKHGAVDLRLGGGAASADAGR 109
           +PS++A +  LH++H  V   LG     AD  R
Sbjct: 2   KPSIVAKLEALHERHEEVQALLGDAGIIADQDR 34

>IL6RB_RAT (P40190) Interleukin-6 receptor beta chain precursor (IL-6R-beta)|
           (Interleukin 6 signal transducer) (Membrane glycoprotein
           130) (gp130) (CD130 antigen)
          Length = 918

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 54  RKHLSSPAPAPEKRSTGQASPHPPKPRHLQGEDQ 155
           +KH+    P P K    Q SPH P   +   +DQ
Sbjct: 647 KKHIWPNVPDPSKSHIAQWSPHTPPRHNFNSKDQ 680


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,808,155
Number of Sequences: 219361
Number of extensions: 1304665
Number of successful extensions: 5569
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 5000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5547
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)