ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl53g05 |
|---|---|
| Clone Library Name | barley_pub |
>UREG_MYCTU (P0A664) Urease accessory protein ureG| Length = 224 Score = 33.5 bits (75), Expect = 0.20 Identities = 14/24 (58%), Positives = 18/24 (75%) Frame = +1 Query: 202 RERKDGLVVTVGIGGPTGSGKTSL 273 R RK G + +G+GGP GSGKT+L Sbjct: 18 RVRKPGEPLRIGVGGPVGSGKTAL 41
>UREG_MYCBO (P0A665) Urease accessory protein ureG| Length = 224 Score = 33.5 bits (75), Expect = 0.20 Identities = 14/24 (58%), Positives = 18/24 (75%) Frame = +1 Query: 202 RERKDGLVVTVGIGGPTGSGKTSL 273 R RK G + +G+GGP GSGKT+L Sbjct: 18 RVRKPGEPLRIGVGGPVGSGKTAL 41
>UREG_BACSB (Q07403) Urease accessory protein ureG| Length = 204 Score = 31.6 bits (70), Expect = 0.78 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = +1 Query: 226 VTVGIGGPTGSGKTSLAEK 282 + +GIGGP G+GKT L EK Sbjct: 4 IRIGIGGPVGAGKTMLVEK 22
>SELU_NITEU (Q82WE9) tRNA 2-selenouridine synthase (EC 2.9.1.-)| (Selenophosphate-dependent tRNA 2-selenouridine synthase) Length = 385 Score = 31.2 bits (69), Expect = 1.0 Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 2/87 (2%) Frame = +1 Query: 157 FDRGYYLLVKAIQELRERKDGLVVTVGIGGPTGSGKTSLAEKXXXXXXXXXXXSMENYRT 336 + R L+ I E + LV+T GPTGSGKT L ++ +R Sbjct: 126 YKRARQFLISTIDRFSEHRKLLVIT----GPTGSGKTRLIHDISNSHPVLDIEALARHRG 181 Query: 337 GA-GADEGSDIDSIDFD-ALACNLQDL 411 A G IDF+ LA NL L Sbjct: 182 SAFGGMSVPQPSQIDFENHLAVNLLKL 208
>URK_BORBU (Q59190) Uridine kinase (EC 2.7.1.48) (Uridine monophosphokinase)| (Cytidine monophosphokinase) Length = 205 Score = 31.2 bits (69), Expect = 1.0 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = +1 Query: 232 VGIGGPTGSGKTSLAEKXXXXXXXXXXXSMENYRTGAGADEGSDIDSIDFD 384 +GI G +GSGKT++ K S +NY G D + ++FD Sbjct: 4 IGISGGSGSGKTTVVSKISEFIPEFVLISQDNYYKSVG-DYEHEFSKVNFD 53
>UREG_STRSL (Q55057) Urease accessory protein ureG| Length = 204 Score = 30.8 bits (68), Expect = 1.3 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = +1 Query: 226 VTVGIGGPTGSGKTSLAEK 282 V +G+GGP GSGKT L E+ Sbjct: 6 VIIGVGGPVGSGKTLLLER 24
>UREG_BORPA (P0A4R8) Urease accessory protein ureG| Length = 214 Score = 30.4 bits (67), Expect = 1.7 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = +1 Query: 232 VGIGGPTGSGKTSLAE 279 VG+GGP GSGKT+L E Sbjct: 19 VGVGGPVGSGKTTLLE 34
>UREG_BORBR (P0A4R7) Urease accessory protein ureG| Length = 214 Score = 30.4 bits (67), Expect = 1.7 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = +1 Query: 232 VGIGGPTGSGKTSLAE 279 VG+GGP GSGKT+L E Sbjct: 19 VGVGGPVGSGKTTLLE 34
>UREG_YEREN (P42871) Urease accessory protein ureG| Length = 221 Score = 30.4 bits (67), Expect = 1.7 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = +1 Query: 223 VVTVGIGGPTGSGKTSLAE 279 + +GIGGP GSGKT++ E Sbjct: 12 ITRIGIGGPVGSGKTAIIE 30
>UREG_KLEAE (P18319) Urease accessory protein ureG| Length = 205 Score = 30.4 bits (67), Expect = 1.7 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = +1 Query: 232 VGIGGPTGSGKTSLAE 279 VG+GGP GSGKT+L E Sbjct: 10 VGVGGPVGSGKTALLE 25
>UREG_YERPS (P69993) Urease accessory protein ureG| Length = 220 Score = 30.4 bits (67), Expect = 1.7 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = +1 Query: 223 VVTVGIGGPTGSGKTSLAE 279 + +GIGGP GSGKT++ E Sbjct: 11 ITRIGIGGPVGSGKTAIIE 29
>UREG_YERPE (P69992) Urease accessory protein ureG| Length = 220 Score = 30.4 bits (67), Expect = 1.7 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = +1 Query: 223 VVTVGIGGPTGSGKTSLAE 279 + +GIGGP GSGKT++ E Sbjct: 11 ITRIGIGGPVGSGKTAIIE 29
>MMAA_MOUSE (Q8C7H1) Methylmalonic aciduria type A homolog, mitochondrial| precursor Length = 415 Score = 30.0 bits (66), Expect = 2.3 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +1 Query: 175 LLVKAIQELRERKDGLVVTVGIGGPTGSGKTSLAE 279 L ++ QELR + L VG+ GP G+GK++ E Sbjct: 124 LALQREQELRNQGKPLTFRVGLSGPPGAGKSTFIE 158
>UREG_PROMI (Q06206) Urease accessory protein ureG| Length = 205 Score = 30.0 bits (66), Expect = 2.3 Identities = 11/16 (68%), Positives = 14/16 (87%) Frame = +1 Query: 232 VGIGGPTGSGKTSLAE 279 +G+GGP GSGKT+L E Sbjct: 10 IGVGGPVGSGKTALLE 25
>UREG_ECOLI (Q03287) Urease accessory protein ureG| Length = 205 Score = 30.0 bits (66), Expect = 2.3 Identities = 11/16 (68%), Positives = 14/16 (87%) Frame = +1 Query: 232 VGIGGPTGSGKTSLAE 279 +G+GGP GSGKT+L E Sbjct: 10 IGVGGPVGSGKTALLE 25
>CLPX_STAAW (Q8NW72) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 420 Score = 29.6 bits (65), Expect = 2.9 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Frame = +1 Query: 184 KAIQELRERKDGLVV---TVGIGGPTGSGKTSLAEKXXXXXXXXXXXSMENYRTGAGADE 354 K IQ+L ++D + + + + GPTGSGKT LA+ + T AG Sbjct: 94 KRIQQLGPKEDDVELQKSNIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGY-V 152 Query: 355 GSDIDSI 375 G D+++I Sbjct: 153 GDDVENI 159
>CLPX_STAAS (Q6G8Q1) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 420 Score = 29.6 bits (65), Expect = 2.9 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Frame = +1 Query: 184 KAIQELRERKDGLVV---TVGIGGPTGSGKTSLAEKXXXXXXXXXXXSMENYRTGAGADE 354 K IQ+L ++D + + + + GPTGSGKT LA+ + T AG Sbjct: 94 KRIQQLGPKEDDVELQKSNIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGY-V 152 Query: 355 GSDIDSI 375 G D+++I Sbjct: 153 GDDVENI 159
>CLPX_STAAR (Q6GG31) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 420 Score = 29.6 bits (65), Expect = 2.9 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Frame = +1 Query: 184 KAIQELRERKDGLVV---TVGIGGPTGSGKTSLAEKXXXXXXXXXXXSMENYRTGAGADE 354 K IQ+L ++D + + + + GPTGSGKT LA+ + T AG Sbjct: 94 KRIQQLGPKEDDVELQKSNIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGY-V 152 Query: 355 GSDIDSI 375 G D+++I Sbjct: 153 GDDVENI 159
>CLPX_STAAN (P63790) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 420 Score = 29.6 bits (65), Expect = 2.9 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Frame = +1 Query: 184 KAIQELRERKDGLVV---TVGIGGPTGSGKTSLAEKXXXXXXXXXXXSMENYRTGAGADE 354 K IQ+L ++D + + + + GPTGSGKT LA+ + T AG Sbjct: 94 KRIQQLGPKEDDVELQKSNIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGY-V 152 Query: 355 GSDIDSI 375 G D+++I Sbjct: 153 GDDVENI 159
>CLPX_STAAM (P63789) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 420 Score = 29.6 bits (65), Expect = 2.9 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Frame = +1 Query: 184 KAIQELRERKDGLVV---TVGIGGPTGSGKTSLAEKXXXXXXXXXXXSMENYRTGAGADE 354 K IQ+L ++D + + + + GPTGSGKT LA+ + T AG Sbjct: 94 KRIQQLGPKEDDVELQKSNIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGY-V 152 Query: 355 GSDIDSI 375 G D+++I Sbjct: 153 GDDVENI 159
>CLPX_STAAC (Q5HF98) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 420 Score = 29.6 bits (65), Expect = 2.9 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Frame = +1 Query: 184 KAIQELRERKDGLVV---TVGIGGPTGSGKTSLAEKXXXXXXXXXXXSMENYRTGAGADE 354 K IQ+L ++D + + + + GPTGSGKT LA+ + T AG Sbjct: 94 KRIQQLGPKEDDVELQKSNIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGY-V 152 Query: 355 GSDIDSI 375 G D+++I Sbjct: 153 GDDVENI 159
>URK1_YEAST (P27515) Uridine kinase (EC 2.7.1.48) (Uridine monophosphokinase)| Length = 501 Score = 29.6 bits (65), Expect = 2.9 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Frame = +1 Query: 232 VGIGGPTGSGKTSLAEKXXXXXXX--XXXXSMENYRTGAGADEGSDIDSIDFD 384 +GIGG +GSGKTS+A K S++N+ G ++ + ++D Sbjct: 59 IGIGGASGSGKTSVAAKIVSSINVPWTVLISLDNFYNPLGPEDRARAFKNEYD 111
>LON_CAMJE (O69300) ATP-dependent protease La (EC 3.4.21.53)| Length = 791 Score = 29.6 bits (65), Expect = 2.9 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = +1 Query: 172 YLLVKAIQELRE--RKDGLVVTVGIGGPTGSGKTSLA 276 Y V+ + E R+ KDG V + + GP G GKTSLA Sbjct: 338 YFAVRELLEKRKIAEKDGAKVILCLYGPPGVGKTSLA 374
>SEC18_YEAST (P18759) Vesicular-fusion protein SEC18| Length = 758 Score = 29.6 bits (65), Expect = 2.9 Identities = 13/29 (44%), Positives = 21/29 (72%) Frame = +1 Query: 190 IQELRERKDGLVVTVGIGGPTGSGKTSLA 276 ++++RE +V++ I GP GSGKT+LA Sbjct: 546 VRQVRESDKSRLVSLLIHGPAGSGKTALA 574
>UREG_HAEIN (P44396) Urease accessory protein ureG| Length = 225 Score = 29.3 bits (64), Expect = 3.8 Identities = 10/19 (52%), Positives = 15/19 (78%) Frame = +1 Query: 226 VTVGIGGPTGSGKTSLAEK 282 + +G+ GP G+GKT+L EK Sbjct: 19 IKIGVAGPVGAGKTALIEK 37
>CMTA2_HUMAN (O94983) Calmodulin-binding transcription activator 2| Length = 1202 Score = 29.3 bits (64), Expect = 3.8 Identities = 14/49 (28%), Positives = 26/49 (53%) Frame = +1 Query: 130 LQSLPLHVSFDRGYYLLVKAIQELRERKDGLVVTVGIGGPTGSGKTSLA 276 L LPL V+ RG+ L + ++EL+ ++ + + P+ S T L+ Sbjct: 789 LGRLPLSVAHSRGHVRLARCLEELQRQEPSVEPPFALSPPSSSPDTGLS 837
>CLPX_STAES (Q8CNY5) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 420 Score = 28.9 bits (63), Expect = 5.0 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Frame = +1 Query: 184 KAIQELRERKDGLVV---TVGIGGPTGSGKTSLAEKXXXXXXXXXXXSMENYRTGAGADE 354 K IQ+L +D + + + + GPTGSGKT LA+ + T AG Sbjct: 94 KRIQQLGPNEDDVELQKSNIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGY-V 152 Query: 355 GSDIDSI 375 G D+++I Sbjct: 153 GDDVENI 159
>CLPX_STAEQ (Q5HNM9) ATP-dependent Clp protease ATP-binding subunit clpX| Length = 420 Score = 28.9 bits (63), Expect = 5.0 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Frame = +1 Query: 184 KAIQELRERKDGLVV---TVGIGGPTGSGKTSLAEKXXXXXXXXXXXSMENYRTGAGADE 354 K IQ+L +D + + + + GPTGSGKT LA+ + T AG Sbjct: 94 KRIQQLGPNEDDVELQKSNIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGY-V 152 Query: 355 GSDIDSI 375 G D+++I Sbjct: 153 GDDVENI 159
>UREG_UREPA (Q56561) Urease accessory protein ureG| Length = 206 Score = 28.9 bits (63), Expect = 5.0 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = +1 Query: 232 VGIGGPTGSGKTSLAEK 282 +G+GGP G+GKT L E+ Sbjct: 7 IGVGGPVGAGKTMLIER 23
>CMTA2_MOUSE (Q80Y50) Calmodulin-binding transcription activator 2| Length = 1208 Score = 28.5 bits (62), Expect = 6.6 Identities = 14/49 (28%), Positives = 27/49 (55%) Frame = +1 Query: 130 LQSLPLHVSFDRGYYLLVKAIQELRERKDGLVVTVGIGGPTGSGKTSLA 276 L LPL V+ RG+ L + ++EL+ ++ + + + P+ S T L+ Sbjct: 796 LGRLPLSVAHSRGHVRLARCLEELQRQELSVEHPLALSPPSSSPDTGLS 844
>YC5D_CAEEL (Q22111) Hypothetical protein T02G5.13 in chromosome II| Length = 399 Score = 28.5 bits (62), Expect = 6.6 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%) Frame = +1 Query: 163 RGYYLLVKAIQELRER-----KDGLVVTVGIGGPTGSGKTSLAE 279 +G LL + E RE+ +D ++ VGI G G GK+S E Sbjct: 99 QGNMLLKMVLDEEREKYKKFGRDSMIFRVGISGSPGVGKSSFIE 142
>MPGP_AERPE (Q9YDM7) Mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70)| (MPGP) Length = 281 Score = 28.5 bits (62), Expect = 6.6 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Frame = -2 Query: 390 EGVEVDGVDVAPLVSPCPRTVVLHGD-DHDAP 298 +G+ +D PL+ PC + VV GD HD P Sbjct: 198 KGMAIDAALQEPLLRPCAKVVVTAGDSSHDIP 229
>UREG_STAXY (P42877) Urease accessory protein ureG| Length = 204 Score = 28.5 bits (62), Expect = 6.6 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = +1 Query: 226 VTVGIGGPTGSGKTSLAEK 282 + +G+GGP G+GK L EK Sbjct: 5 IKIGVGGPVGAGKHELIEK 23
>VA57_VACCC (P21074) Guanylate kinase homolog| Length = 193 Score = 28.5 bits (62), Expect = 6.6 Identities = 10/22 (45%), Positives = 19/22 (86%) Frame = +1 Query: 217 GLVVTVGIGGPTGSGKTSLAEK 282 G+V ++ + GP+GSGKT++A++ Sbjct: 3 GIVKSIILSGPSGSGKTAIAKR 24
>SELU_BDEBA (Q6MK43) tRNA 2-selenouridine synthase (EC 2.9.1.-)| (Selenophosphate-dependent tRNA 2-selenouridine synthase) Length = 379 Score = 28.1 bits (61), Expect = 8.6 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +1 Query: 178 LVKAIQELRERKDGLVVTVGIGGPTGSGKT 267 L+K I+E R++ + + GPTGSGKT Sbjct: 133 LIKQIEEFSVRQE----LISVSGPTGSGKT 158
>UREG_ACTPL (O54424) Urease accessory protein ureG| Length = 211 Score = 28.1 bits (61), Expect = 8.6 Identities = 9/19 (47%), Positives = 15/19 (78%) Frame = +1 Query: 226 VTVGIGGPTGSGKTSLAEK 282 + +G+ GP G+GKT+L E+ Sbjct: 5 IKIGVAGPVGAGKTALIER 23
>RNH2_BARQU (Q6G0E6) Ribonuclease HII (EC 3.1.26.4) (RNase HII)| Length = 223 Score = 28.1 bits (61), Expect = 8.6 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -2 Query: 378 VDGVDVAPLVSPCPRTVVLHGDDH 307 +DG D+ P PCP T ++ GD H Sbjct: 129 IDGRDI-PFQLPCPATALIKGDQH 151
>UREG_SYNY3 (P72955) Urease accessory protein ureG| Length = 206 Score = 28.1 bits (61), Expect = 8.6 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = +1 Query: 232 VGIGGPTGSGKTSLAE 279 +GI GP GSGKT+L E Sbjct: 8 IGIAGPVGSGKTALLE 23
>UREG_HELPY (Q09066) Urease accessory protein ureG| Length = 199 Score = 28.1 bits (61), Expect = 8.6 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = +1 Query: 223 VVTVGIGGPTGSGKTSLAE 279 +V +G+ GP GSGKT+L E Sbjct: 1 MVKIGVCGPVGSGKTALIE 19
>UREG_HELPJ (Q9ZMZ7) Urease accessory protein ureG| Length = 199 Score = 28.1 bits (61), Expect = 8.6 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = +1 Query: 223 VVTVGIGGPTGSGKTSLAE 279 +V +G+ GP GSGKT+L E Sbjct: 1 MVKIGVCGPVGSGKTALIE 19 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,500,472 Number of Sequences: 219361 Number of extensions: 417963 Number of successful extensions: 4609 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 4386 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4599 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
