ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl53g05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_462711.1| Oryza sativa (japonica cultivar-group), predic... 321 1e-84
2emb|AL731614.4|OSJN00260 Oryza sativa genomic DNA, chromosome 4,... 176 4e-41
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 176 4e-41
4gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence 52 0.001
5gb|AF361941.1|AF361941 Brucella melitensis biovar Abortus urease... 52 0.001
6gb|AE009600.1| Brucella melitensis 16M chromosome I, section 157... 52 0.001
7gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 52 0.001
8emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I,... 52 0.001
9gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 48 0.023
10gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 46 0.091
11gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 44 0.36
12gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 44 0.36
13gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 44 0.36
14emb|Z81120.1|CET12D8 Caenorhabditis elegans Cosmid T12D8, comple... 44 0.36
15gb|CP000316.1| Polaromonas sp. JS666, complete genome 44 0.36
16gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 44 0.36
17emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genom... 44 0.36
18ref|NM_067418.2| Caenorhabditis elegans Temporarily Assigned Gen... 44 0.36
19dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.36
20gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 42 1.4
21gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 42 1.4
22gb|CP000133.1| Rhizobium etli CFN 42, complete genome 42 1.4
23gb|CP000249.1| Frankia sp. CcI3, complete genome 42 1.4
24gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 42 1.4
25dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 42 1.4
26gb|AE015451.1| Pseudomonas putida KT2440 complete genome 42 1.4
27dbj|AB023642.1| Streptomyces griseus genes for negative regulato... 42 1.4
28gb|AC165426.3| Mus musculus BAC clone RP23-157G2 from chromosome... 40 5.6
29ref|XM_469164.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.6
30ref|XM_507070.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 5.6
31gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipie... 40 5.6
32ref|NM_001030648.1| Gallus gallus neuroepithelial cell transform... 40 5.6
33gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 5.6
34gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 5.6
35gb|AC186558.1| Gasterosteus aculeatus clone VMRC26-150D01, compl... 40 5.6
36gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 5.6
37gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.6
38gb|AC137991.3| Oryza sativa chromosome 3 BAC OSJNBa0034D21 genom... 40 5.6
39gb|AC145387.2| Oryza sativa chromosome 3 BAC OSJNBb0031A14 genom... 40 5.6
40gb|AC123049.4| Mus musculus BAC clone RP24-360B3 from chromosome... 40 5.6
41emb|AL691429.17| Human DNA sequence from clone RP13-137A17 on ch... 40 5.6
42emb|AL391724.7| Human DNA sequence from clone RP11-350A18 on chr... 40 5.6
43emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 5.6
44gb|DQ108539.1| Corchorus olitorius SSR marker J140-M13F genomic ... 40 5.6
45emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete ... 40 5.6
46emb|AJ720414.1| Gallus gallus mRNA for hypothetical protein, clo... 40 5.6
47gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 5.6
48dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
49emb|BX931815.1| Gallus gallus finished cDNA, clone ChEST800l12 40 5.6
50gb|AE004942.1| Pseudomonas aeruginosa PAO1, section 503 of 529 o... 40 5.6
51gb|U07832.1|PAU07832 Pseudomonas aeruginosa helicase I (helA) ge... 40 5.6
52dbj|AK100794.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
53gb|AC171018.2| Gallus gallus BAC clone CH261-11F14 from chromoso... 40 5.6
54gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 5.6
55gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 5.6 
>ref|XM_462711.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3447

 Score =  321 bits (162), Expect = 1e-84
 Identities = 228/250 (91%)
 Strand = Plus / Plus

                                                                       
Query: 157 ttcgaccgcggctactacctcctcgtgaaggcgatccaggagctgcgcgagcgcaaggat 216
           ||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||| 
Sbjct: 415 ttcgaccgcggcttctacctcctcgtcaaggcgatccaggagctgcgtgagcgcaaggac 474

                                                                       
Query: 217 ggccttgtcgtcaccgtcggcatcggcgggcctaccggctccggcaagaccagcttggcg 276
           ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 475 ggcctcgtcgtcaccgtcggcatcggcgggccaaccggctccggcaagaccagcctggcg 534

                                                                       
Query: 277 gagaaggtggcatcggtgctggggtgcgtcgtggtcgtctccatggagaactaccgtacg 336
           ||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||| |||
Sbjct: 535 gagaaggtggcgtcggtgctggggtgcgtcgtgatcgtctccatggaggactaccgcacg 594

                                                                       
Query: 337 ggggcaggggctgacgaggggagcgacatcgactccatcgacttcgacgccctcgcgtgc 396
           | ||| ||||| ||||| || |||||| | ||| ||||||||||||||||||||||  | 
Sbjct: 595 gtggccggggccgacgacggcagcgacgttgacgccatcgacttcgacgccctcgctcgt 654

                     
Query: 397 aacctccagg 406
           ||||||||||
Sbjct: 655 aacctccagg 664
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>emb|AL731614.4|OSJN00260 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079F16,
             complete sequence
          Length = 157801

 Score =  176 bits (89), Expect = 4e-41
 Identities = 107/113 (94%)
 Strand = Plus / Plus

                                                                         
Query: 157   ttcgaccgcggctactacctcctcgtgaaggcgatccaggagctgcgcgagcgcaaggat 216
             ||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||| 
Sbjct: 90507 ttcgaccgcggcttctacctcctcgtcaaggcgatccaggagctgcgtgagcgcaaggac 90566

                                                                  
Query: 217   ggccttgtcgtcaccgtcggcatcggcgggcctaccggctccggcaagaccag 269
             ||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 90567 ggcctcgtcgtcaccgtcggcatcggcgggccaaccggctccggcaagaccag 90619



 Score =  151 bits (76), Expect = 2e-33
 Identities = 124/140 (88%)
 Strand = Plus / Plus

                                                                         
Query: 267   cagcttggcggagaaggtggcatcggtgctggggtgcgtcgtggtcgtctccatggagaa 326
             |||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
Sbjct: 90705 cagcctggcggagaaggtggcgtcggtgctggggtgcgtcgtgatcgtctccatggagga 90764

                                                                         
Query: 327   ctaccgtacgggggcaggggctgacgaggggagcgacatcgactccatcgacttcgacgc 386
             |||||| |||| ||| ||||| ||||| || |||||| | ||| ||||||||||||||||
Sbjct: 90765 ctaccgcacggtggccggggccgacgacggcagcgacgttgacgccatcgacttcgacgc 90824

                                 
Query: 387   cctcgcgtgcaacctccagg 406
             ||||||  | ||||||||||
Sbjct: 90825 cctcgctcgtaacctccagg 90844



 Score =  105 bits (53), Expect = 1e-19
 Identities = 93/105 (88%), Gaps = 1/105 (0%)
 Strand = Plus / Plus

                                                                         
Query: 1     atggatgcagacctcctgcagcgctgcctcgaggccggcggccgcgacttcctcctccac 60
             ||||| || |||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 90270 atggacgccgacctcgtgcagcgctgcctcgag-ccggcggccgcgacctcctcctccac 90328

                                                          
Query: 61    catccttcgtcccctccttcccccacatccgcctctgccgccgcc 105
             || || || |||||||| |||||||| |||||||| ||| |||||
Sbjct: 90329 cacccctcctcccctccctcccccacctccgcctccgcctccgcc 90373
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  176 bits (89), Expect = 4e-41
 Identities = 107/113 (94%)
 Strand = Plus / Plus

                                                                            
Query: 157      ttcgaccgcggctactacctcctcgtgaaggcgatccaggagctgcgcgagcgcaaggat 216
                ||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||| 
Sbjct: 11921912 ttcgaccgcggcttctacctcctcgtcaaggcgatccaggagctgcgtgagcgcaaggac 11921971

                                                                     
Query: 217      ggccttgtcgtcaccgtcggcatcggcgggcctaccggctccggcaagaccag 269
                ||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 11921972 ggcctcgtcgtcaccgtcggcatcggcgggccaaccggctccggcaagaccag 11922024



 Score =  151 bits (76), Expect = 2e-33
 Identities = 124/140 (88%)
 Strand = Plus / Plus

                                                                            
Query: 267      cagcttggcggagaaggtggcatcggtgctggggtgcgtcgtggtcgtctccatggagaa 326
                |||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
Sbjct: 11922110 cagcctggcggagaaggtggcgtcggtgctggggtgcgtcgtgatcgtctccatggagga 11922169

                                                                            
Query: 327      ctaccgtacgggggcaggggctgacgaggggagcgacatcgactccatcgacttcgacgc 386
                |||||| |||| ||| ||||| ||||| || |||||| | ||| ||||||||||||||||
Sbjct: 11922170 ctaccgcacggtggccggggccgacgacggcagcgacgttgacgccatcgacttcgacgc 11922229

                                    
Query: 387      cctcgcgtgcaacctccagg 406
                ||||||  | ||||||||||
Sbjct: 11922230 cctcgctcgtaacctccagg 11922249



 Score =  105 bits (53), Expect = 1e-19
 Identities = 93/105 (88%), Gaps = 1/105 (0%)
 Strand = Plus / Plus

                                                                            
Query: 1        atggatgcagacctcctgcagcgctgcctcgaggccggcggccgcgacttcctcctccac 60
                ||||| || |||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 11921675 atggacgccgacctcgtgcagcgctgcctcgag-ccggcggccgcgacctcctcctccac 11921733

                                                             
Query: 61       catccttcgtcccctccttcccccacatccgcctctgccgccgcc 105
                || || || |||||||| |||||||| |||||||| ||| |||||
Sbjct: 11921734 cacccctcctcccctccctcccccacctccgcctccgcctccgcc 11921778
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>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence
          Length = 2107794

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                    
Query: 231    cgtcggcatcggcgggcctaccggctccggcaagacca 268
              |||||||||||| ||||||  |||||||||||||||||
Sbjct: 278700 cgtcggcatcggtgggcctgtcggctccggcaagacca 278737
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>gb|AF361941.1|AF361941 Brucella melitensis biovar Abortus urease accessory protein UreD
            (ureD), urease gamma subunit UreA (ureA), urease beta
            subunit UreB (ureB), urease alpha subunit UreC (ureC),
            urease accessory protein UreE (ureE), urease accessory
            protein UreF (ureF), and urease accessory protein UreG
            (ureG) genes, complete cds; and tRNA-Arg gene, complete
            sequence
          Length = 5702

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                  
Query: 231  cgtcggcatcggcgggcctaccggctccggcaagacca 268
            |||||||||||| ||||||  |||||||||||||||||
Sbjct: 4907 cgtcggcatcggtgggcctgtcggctccggcaagacca 4944
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>gb|AE009600.1| Brucella melitensis 16M chromosome I, section 157 of 195 of the
             complete sequence
          Length = 13556

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 231   cgtcggcatcggcgggcctaccggctccggcaagacca 268
             |||||||||||| ||||||  |||||||||||||||||
Sbjct: 10195 cgtcggcatcggtgggcctgtcggctccggcaagacca 10158
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>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence
          Length = 2124241

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                    
Query: 231    cgtcggcatcggcgggcctaccggctccggcaagacca 268
              |||||||||||| ||||||  |||||||||||||||||
Sbjct: 300694 cgtcggcatcggtgggcctgtcggctccggcaagacca 300731
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>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence,
              strain 2308
          Length = 2121359

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                    
Query: 231    cgtcggcatcggcgggcctaccggctccggcaagacca 268
              |||||||||||| ||||||  |||||||||||||||||
Sbjct: 297061 cgtcggcatcggtgggcctgtcggctccggcaagacca 297098
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                   
Query: 231     cgtcggcatcggcgggcctaccggctccggcaagac 266
               ||||||||||||||| |||  |||||||||||||||
Sbjct: 1693603 cgtcggcatcggcggccctgtcggctccggcaagac 1693568
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 26     gcctcgaggccggcggccgcgac 48
              |||||||||||||||||||||||
Sbjct: 895997 gcctcgaggccggcggccgcgac 895975
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 231    cgtcggcatcggcgggcctaccggctccggcaagacca 268
              ||||||||||||||| ||   |||||||||||||||||
Sbjct: 930305 cgtcggcatcggcggccccgtcggctccggcaagacca 930268
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 243    cgggcctaccggctccggcaagacca 268
              ||||||| ||||||||||||||||||
Sbjct: 617665 cgggccttccggctccggcaagacca 617690
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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 243     cgggcctaccggctccggcaagacca 268
               |||||| |||||||||||||||||||
Sbjct: 3557447 cgggccgaccggctccggcaagacca 3557422
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>emb|Z81120.1|CET12D8 Caenorhabditis elegans Cosmid T12D8, complete sequence
          Length = 37353

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 36    cggcggccgcgacttcctcctc 57
             ||||||||||||||||||||||
Sbjct: 34310 cggcggccgcgacttcctcctc 34289
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 243     cgggcctaccggctccggcaagacca 268
               |||||| |||||||||||||||||||
Sbjct: 4075390 cgggccgaccggctccggcaagacca 4075365
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                     
Query: 231     cgtcggcatcggcgggcctaccggctccggcaagacca 268
               ||||||| ||||||| |||  |||||||||||||||||
Sbjct: 1085644 cgtcggcgtcggcggacctgtcggctccggcaagacca 1085681
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>emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genome; segment 8/16
          Length = 349640

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 231   cgtcggcatcggcgggcctaccggctccggcaagacca 268
             ||||||||||| |||||| | |||| ||||||||||||
Sbjct: 21894 cgtcggcatcgtcgggccgaacggcgccggcaagacca 21857
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>ref|NM_067418.2| Caenorhabditis elegans Temporarily Assigned Gene name family member
            (tag-350) (tag-350) mRNA, complete cds
          Length = 7967

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 36   cggcggccgcgacttcctcctc 57
            ||||||||||||||||||||||
Sbjct: 5602 cggcggccgcgacttcctcctc 5581
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 173     acctcctcgtgaaggcgatccaggagctgc 202
               ||||| ||||||||||||||| ||||||||
Sbjct: 2712245 acctcgtcgtgaaggcgatccgggagctgc 2712274
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 34      gccggcggccgcgacttcctc 54
               |||||||||||||||||||||
Sbjct: 3485213 gccggcggccgcgacttcctc 3485233
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 251     ccggctccggcaagaccagcttggc 275
               |||||||||||||||||||| ||||
Sbjct: 3637095 ccggctccggcaagaccagcctggc 3637071



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 243     cgggcctaccggctccggcaagaccagc 270
               |||||| |||||||| ||||||||||||
Sbjct: 6759236 cgggcccaccggctcgggcaagaccagc 6759263
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                    
Query: 231     cgtcggcatcggcgggcctaccggctccggcaagacc 267
               ||||||||||||||||||   |||||| |||||||||
Sbjct: 3466057 cgtcggcatcggcgggccggtcggctcgggcaagacc 3466021
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                       
Query: 228    caccgtcggcatcggcgggcctaccggctccggcaagacca 268
              ||||||||  |||| |||||| |||||| ||||||||||||
Sbjct: 450023 caccgtcgcgatcgtcgggccgaccggcgccggcaagacca 450063
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 243     cgggcctaccggctccggcaagacc 267
               |||||| ||||||||||||||||||
Sbjct: 2444754 cgggccgaccggctccggcaagacc 2444730



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 27      cctcgaggccggcggccgcg 46
               ||||||||||||||||||||
Sbjct: 2070500 cctcgaggccggcggccgcg 2070481
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 250    accggctccggcaagaccagc 270
              |||||||||||||||||||||
Sbjct: 978561 accggctccggcaagaccagc 978541
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 250     accggctccggcaagaccagc 270
               |||||||||||||||||||||
Sbjct: 5920432 accggctccggcaagaccagc 5920452
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>dbj|AB023642.1| Streptomyces griseus genes for negative regulator in initiation of
           differentiation, sigma factor of sigB family,
           DNA-binding protein, complete cds
          Length = 3613

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 330 ccgtacgggggcaggggctgacgag 354
           |||||||||||||||||||| ||||
Sbjct: 334 ccgtacgggggcaggggctggcgag 310
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>gb|AC165426.3| Mus musculus BAC clone RP23-157G2 from chromosome 5, complete
            sequence
          Length = 245594

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   cccctccttcccccacatcc 90
            ||||||||||||||||||||
Sbjct: 1392 cccctccttcccccacatcc 1411
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>ref|XM_469164.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1483

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 27  cctcgaggccggcggccgcgacttcctc 54
           |||||| ||| |||||||||||||||||
Sbjct: 481 cctcgacgcccgcggccgcgacttcctc 508
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>ref|XM_507070.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0034D21.3
           mRNA
          Length = 1521

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 27  cctcgaggccggcggccgcgacttcctc 54
           |||||| ||| |||||||||||||||||
Sbjct: 466 cctcgacgcccgcggccgcgacttcctc 493
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>gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940117D9, complete sequence
          Length = 143368

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   tcgtcaccgtcggcatcggc 243
             ||||||||||||||||||||
Sbjct: 45282 tcgtcaccgtcggcatcggc 45301
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>ref|NM_001030648.1| Gallus gallus neuroepithelial cell transforming gene 1 (NET1), mRNA
          Length = 3087

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 14  tcctgcagcgctgcctcgag 33
           ||||||||||||||||||||
Sbjct: 759 tcctgcagcgctgcctcgag 778
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                   
Query: 231     cgtcggcatcggcgggcctaccggctccggcaagac 266
               ||||||||||||||| ||   |||||||||||||||
Sbjct: 2270147 cgtcggcatcggcggcccggtcggctccggcaagac 2270182
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 224    tcgtcaccgtcggcatcggc 243
              ||||||||||||||||||||
Sbjct: 793768 tcgtcaccgtcggcatcggc 793787
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>gb|AC186558.1| Gasterosteus aculeatus clone VMRC26-150D01, complete sequence
          Length = 166468

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     tcctgcagcgctgcctcgag 33
              ||||||||||||||||||||
Sbjct: 154426 tcctgcagcgctgcctcgag 154445
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                   
Query: 231     cgtcggcatcggcgggcctaccggctccggcaagac 266
               ||||||||||||||| ||   |||||||||||||||
Sbjct: 3443718 cgtcggcatcggcggcccggtcggctccggcaagac 3443753
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 27       cctcgaggccggcggccgcgacttcctc 54
                |||||| ||| |||||||||||||||||
Sbjct: 25832839 cctcgacgcccgcggccgcgacttcctc 25832812
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>gb|AC137991.3| Oryza sativa chromosome 3 BAC OSJNBa0034D21 genomic sequence, complete
             sequence
          Length = 190834

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 27    cctcgaggccggcggccgcgacttcctc 54
             |||||| ||| |||||||||||||||||
Sbjct: 12057 cctcgacgcccgcggccgcgacttcctc 12084
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>gb|AC145387.2| Oryza sativa chromosome 3 BAC OSJNBb0031A14 genomic sequence,
            complete sequence
          Length = 44761

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 27   cctcgaggccggcggccgcgacttcctc 54
            |||||| ||| |||||||||||||||||
Sbjct: 3782 cctcgacgcccgcggccgcgacttcctc 3755
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>gb|AC123049.4| Mus musculus BAC clone RP24-360B3 from chromosome 5, complete sequence
          Length = 166292

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     cccctccttcccccacatcc 90
              ||||||||||||||||||||
Sbjct: 108142 cccctccttcccccacatcc 108161
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>emb|AL691429.17| Human DNA sequence from clone RP13-137A17 on chromosome 10 Contains the
             5' end of a novel gene, four novel genes and nine CpG
             islands, complete sequence
          Length = 136299

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 287   catcggtgctggggtgcgtcgtgg 310
             ||||||||||| ||||||||||||
Sbjct: 34861 catcggtgctgaggtgcgtcgtgg 34838



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 287   catcggtgctggggtgcgtcgtgg 310
             ||||||||||| ||||||||||||
Sbjct: 34826 catcggtgctgaggtgcgtcgtgg 34803



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 287   catcggtgctggggtgcgtcgtgg 310
             ||||||||||| ||||||||||||
Sbjct: 34791 catcggtgctgaggtgcgtcgtgg 34768



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 287   catcggtgctggggtgcgtcgtgg 310
             ||||||||||| ||||||||||||
Sbjct: 34756 catcggtgctgaggtgcgtcgtgg 34733



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 287   catcggtgctggggtgcgtcgtgg 310
             ||||||||||| ||||||||||||
Sbjct: 34721 catcggtgctgaggtgcgtcgtgg 34698



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 287   catcggtgctggggtgcgtcgtgg 310
             ||||||||||| ||||||||||||
Sbjct: 34686 catcggtgctgaggtgcgtcgtgg 34663



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 287   catcggtgctggggtgcgtcgtgg 310
             ||||||||||| ||||||||||||
Sbjct: 34651 catcggtgctgaggtgcgtcgtgg 34628



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 287   catcggtgctggggtgcgtcgtgg 310
             ||||||||||| ||||||||||||
Sbjct: 34616 catcggtgctgaggtgcgtcgtgg 34593



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 287   catcggtgctggggtgcgtcgtgg 310
             ||||||||||| ||||||||||||
Sbjct: 34581 catcggtgctgaggtgcgtcgtgg 34558



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 287   catcggtgctggggtgcgtcgtgg 310
             ||||||||||| ||||||||||||
Sbjct: 34546 catcggtgctgaggtgcgtcgtgg 34523



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 287   catcggtgctggggtgcgtcgtgg 310
             ||||||||||| ||||||||||||
Sbjct: 34511 catcggtgctgaggtgcgtcgtgg 34488



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 287   catcggtgctggggtgcgtcgtgg 310
             ||||||||||| ||||||||||||
Sbjct: 34476 catcggtgctgaggtgcgtcgtgg 34453



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 287   catcggtgctggggtgcgtcgtgg 310
             ||||||||||| ||||||||||||
Sbjct: 34441 catcggtgctgaggtgcgtcgtgg 34418
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>emb|AL391724.7| Human DNA sequence from clone RP11-350A18 on chromosome 13 Contains a
              novel gene, complete sequence
          Length = 141628

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     ccgcgacttcctcctccacc 61
              ||||||||||||||||||||
Sbjct: 114328 ccgcgacttcctcctccacc 114347
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                   
Query: 231     cgtcggcatcggcgggcctaccggctccggcaagac 266
               ||||||||||||||| ||   |||||||||||||||
Sbjct: 3184843 cgtcggcatcggcggcccggtcggctccggcaagac 3184878
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>gb|DQ108539.1| Corchorus olitorius SSR marker J140-M13F genomic sequence
          Length = 825

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 30  cgaggccggcggccgcgact 49
           ||||||||||||||||||||
Sbjct: 494 cgaggccggcggccgcgact 475
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>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 179   tcgtgaaggcgatccaggagctgc 202
             ||||||||||||||| ||||||||
Sbjct: 32308 tcgtgaaggcgatccgggagctgc 32285
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>emb|AJ720414.1| Gallus gallus mRNA for hypothetical protein, clone 17c24
          Length = 3087

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 14  tcctgcagcgctgcctcgag 33
           ||||||||||||||||||||
Sbjct: 759 tcctgcagcgctgcctcgag 778
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 209     gcaaggatggccttgtcgtcaccg 232
               ||||||||||| ||||||||||||
Sbjct: 1998231 gcaaggatggcgttgtcgtcaccg 1998254
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 27       cctcgaggccggcggccgcgacttcctc 54
                |||||| ||| |||||||||||||||||
Sbjct: 25924148 cctcgacgcccgcggccgcgacttcctc 25924121
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>emb|BX931815.1| Gallus gallus finished cDNA, clone ChEST800l12
          Length = 1098

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 14  tcctgcagcgctgcctcgag 33
           ||||||||||||||||||||
Sbjct: 936 tcctgcagcgctgcctcgag 955
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>gb|AE004942.1| Pseudomonas aeruginosa PAO1, section 503 of 529 of the complete
            genome
          Length = 10977

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 251  ccggctccggcaagaccagc 270
            ||||||||||||||||||||
Sbjct: 4487 ccggctccggcaagaccagc 4506
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>gb|U07832.1|PAU07832 Pseudomonas aeruginosa helicase I (helA) gene, partial cds
          Length = 2122

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 251 ccggctccggcaagaccagc 270
           ||||||||||||||||||||
Sbjct: 701 ccggctccggcaagaccagc 720
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>dbj|AK100794.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121E24, full
           insert sequence
          Length = 1485

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 27  cctcgaggccggcggccgcgacttcctc 54
           |||||| ||| |||||||||||||||||
Sbjct: 483 cctcgacgcccgcggccgcgacttcctc 510
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>gb|AC171018.2| Gallus gallus BAC clone CH261-11F14 from chromosome ul, complete sequence
          Length = 216886

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     tcctgcagcgctgcctcgag 33
              ||||||||||||||||||||
Sbjct: 101431 tcctgcagcgctgcctcgag 101412
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 18      gcagcgctgcctcgaggccggcgg 41
               ||||||||| ||||||||||||||
Sbjct: 3981889 gcagcgctggctcgaggccggcgg 3981912
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 230     ccgtcggcatcggcgggcct 249
               ||||||||||||||||||||
Sbjct: 1449601 ccgtcggcatcggcgggcct 1449620


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,781,882
Number of Sequences: 3902068
Number of extensions: 2781882
Number of successful extensions: 74995
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72560
Number of HSP's gapped (non-prelim): 2433
length of query: 418
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 396
effective length of database: 17,147,199,772
effective search space: 6790291109712
effective search space used: 6790291109712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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