ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl53f11 |
|---|---|
| Clone Library Name | barley_pub |
>AP2B1_RAT (P62944) AP-2 complex subunit beta-1 (Adapter-related protein| complex 2 beta-1 subunit) (Beta-adaptin) (Plasma membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin assembly protein complex 2 beta large chain) (AP105B) Length = 937 Score = 147 bits (370), Expect = 2e-35 Identities = 73/87 (83%), Positives = 82/87 (94%) Frame = +3 Query: 195 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 374 DSKYF+T KKGEI ELK ELN++ K+KRK+AVKKVIAAMTVGKDVSSLF DVVNCMQT+N Sbjct: 3 DSKYFTTNKKGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDN 62 Query: 375 LELKKLVYLYLINYAKSQPDLAILAVN 455 LELKKLVYLYL+NYAKSQPD+AI+AVN Sbjct: 63 LELKKLVYLYLMNYAKSQPDMAIMAVN 89
>AP2B1_MOUSE (Q9DBG3) AP-2 complex subunit beta-1 (Adapter-related protein| complex 2 beta-1 subunit) (Beta-adaptin) (Plasma membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin assembly protein complex 2 beta large chain) (AP105B) Length = 937 Score = 147 bits (370), Expect = 2e-35 Identities = 73/87 (83%), Positives = 82/87 (94%) Frame = +3 Query: 195 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 374 DSKYF+T KKGEI ELK ELN++ K+KRK+AVKKVIAAMTVGKDVSSLF DVVNCMQT+N Sbjct: 3 DSKYFTTNKKGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDN 62 Query: 375 LELKKLVYLYLINYAKSQPDLAILAVN 455 LELKKLVYLYL+NYAKSQPD+AI+AVN Sbjct: 63 LELKKLVYLYLMNYAKSQPDMAIMAVN 89
>AP2B1_HUMAN (P63010) AP-2 complex subunit beta-1 (Adapter-related protein| complex 2 beta-1 subunit) (Beta-adaptin) (Plasma membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin assembly protein complex 2 beta large chain) (AP105B) Length = 937 Score = 147 bits (370), Expect = 2e-35 Identities = 73/87 (83%), Positives = 82/87 (94%) Frame = +3 Query: 195 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 374 DSKYF+T KKGEI ELK ELN++ K+KRK+AVKKVIAAMTVGKDVSSLF DVVNCMQT+N Sbjct: 3 DSKYFTTNKKGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDN 62 Query: 375 LELKKLVYLYLINYAKSQPDLAILAVN 455 LELKKLVYLYL+NYAKSQPD+AI+AVN Sbjct: 63 LELKKLVYLYLMNYAKSQPDMAIMAVN 89
>AP1B1_RAT (P52303) AP-1 complex subunit beta-1 (Adapter-related protein| complex 1 beta-1 subunit) (Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1 subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit) (Clathrin assembly protein complex 1 beta large Length = 949 Score = 145 bits (367), Expect = 4e-35 Identities = 72/87 (82%), Positives = 82/87 (94%) Frame = +3 Query: 195 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 374 DSKYF+TTKKGEI ELK ELNS K+K+K+AVKKVIA+MTVGKDVS+LF DVVNCMQT+N Sbjct: 3 DSKYFTTTKKGEIFELKAELNSDKKEKKKEAVKKVIASMTVGKDVSALFPDVVNCMQTDN 62 Query: 375 LELKKLVYLYLINYAKSQPDLAILAVN 455 LELKKLVYLYL+NYAKSQPD+AI+AVN Sbjct: 63 LELKKLVYLYLMNYAKSQPDMAIMAVN 89
>AP1B1_HUMAN (Q10567) AP-1 complex subunit beta-1 (Adapter-related protein| complex 1 beta-1 subunit) (Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1 subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit) (Clathrin assembly protein complex 1 beta larg Length = 949 Score = 145 bits (367), Expect = 4e-35 Identities = 72/87 (82%), Positives = 82/87 (94%) Frame = +3 Query: 195 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 374 DSKYF+TTKKGEI ELK ELNS K+K+K+AVKKVIA+MTVGKDVS+LF DVVNCMQT+N Sbjct: 3 DSKYFTTTKKGEIFELKAELNSDKKEKKKEAVKKVIASMTVGKDVSALFPDVVNCMQTDN 62 Query: 375 LELKKLVYLYLINYAKSQPDLAILAVN 455 LELKKLVYLYL+NYAKSQPD+AI+AVN Sbjct: 63 LELKKLVYLYLMNYAKSQPDMAIMAVN 89
>AP1B1_MOUSE (O35643) AP-1 complex subunit beta-1 (Adapter-related protein| complex 1 beta-1 subunit) (Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1 subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit) (Clathrin assembly protein complex 1 beta larg Length = 943 Score = 145 bits (367), Expect = 4e-35 Identities = 72/87 (82%), Positives = 82/87 (94%) Frame = +3 Query: 195 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 374 DSKYF+TTKKGEI ELK ELNS K+K+K+AVKKVIA+MTVGKDVS+LF DVVNCMQT+N Sbjct: 3 DSKYFTTTKKGEIFELKAELNSDKKEKKKEAVKKVIASMTVGKDVSALFPDVVNCMQTDN 62 Query: 375 LELKKLVYLYLINYAKSQPDLAILAVN 455 LELKKLVYLYL+NYAKSQPD+AI+AVN Sbjct: 63 LELKKLVYLYLMNYAKSQPDMAIMAVN 89
>AP2B1_BOVIN (P63009) AP-2 complex subunit beta-1 (Adapter-related protein| complex 2 beta-1 subunit) (Beta-adaptin) (Plasma membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin assembly protein complex 2 beta large chain) (AP105B) (Fragment) Length = 236 Score = 105 bits (262), Expect = 5e-23 Identities = 52/57 (91%), Positives = 56/57 (98%) Frame = +3 Query: 285 AVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVN 455 AVKKVIAAMTVGKDVSSLF DVVNCMQT+NLELKKLVYLYL+NYAKSQPD+AI+AVN Sbjct: 1 AVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVN 57
>AP1B1_SCHPO (O43079) AP-1 complex subunit beta-1 (Beta(1)-adaptin) (Clathrin| assembly protein large beta-1 chain) (Clathrin assembly protein complex 1 beta-1 large chain) Length = 683 Score = 102 bits (255), Expect = 4e-22 Identities = 55/86 (63%), Positives = 64/86 (74%) Frame = +3 Query: 198 SKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENL 377 S F KK E EL++ L SQY +R DAVK+ IAAMTVGKDVSSLF DV+ + T ++ Sbjct: 8 SSRFKAFKKSETSELQKGLVSQYAYERIDAVKRTIAAMTVGKDVSSLFPDVLKNLATRDI 67 Query: 378 ELKKLVYLYLINYAKSQPDLAILAVN 455 LKKLVYLYLINYAK+ PDL ILAVN Sbjct: 68 TLKKLVYLYLINYAKTHPDLCILAVN 93
>AP1B1_YEAST (P36000) AP-1 complex subunit beta-1 (Beta(1)-adaptin) (Clathrin| assembly protein large beta-1 chain) (Clathrin assembly protein complex 1 beta-1 large chain) Length = 726 Score = 93.6 bits (231), Expect = 2e-19 Identities = 47/78 (60%), Positives = 60/78 (76%) Frame = +3 Query: 222 KGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELKKLVYL 401 KGE+ EL+ L SQY RKDA+KK I MT+GKDVSSLF DV+ + T ++E KKLVYL Sbjct: 25 KGELSELRTGLVSQYPQTRKDAIKKTIQQMTLGKDVSSLFPDVLKNIATIDVEQKKLVYL 84 Query: 402 YLINYAKSQPDLAILAVN 455 Y++NYA++ P+L ILAVN Sbjct: 85 YVMNYAETHPELCILAVN 102
>AP3B1_CANFA (Q7YRF1) AP-3 complex subunit beta-1 (Adapter-related protein| complex 3 beta-1 subunit) (Beta3A-adaptin) (Adaptor protein complex AP-3 beta-1 subunit) (Clathrin assembly protein complex 3 beta-1 large chain) Length = 1091 Score = 73.9 bits (180), Expect = 2e-13 Identities = 42/109 (38%), Positives = 66/109 (60%), Gaps = 1/109 (0%) Frame = +3 Query: 132 AGGGDRCVFGR*ARRG-DMSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAA 308 AGGG+ G+ A SG + S KK E +LK+ L S + DA+K+++ Sbjct: 12 AGGGEATELGQEATSTVSPSGAFGLFSSDLKKNE--DLKQMLESNKDSAKLDAMKRIVGM 69 Query: 309 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVN 455 + GK+ S LF VV + ++N+E+KKLVY+YL+ YA+ Q DLA+L+++ Sbjct: 70 IAKGKNASELFPAVVKNVASKNIEIKKLVYVYLVRYAEEQQDLALLSIS 118
>AP3B1_HUMAN (O00203) AP-3 complex subunit beta-1 (Adapter-related protein| complex 3 beta-1 subunit) (Beta3A-adaptin) (Adaptor protein complex AP-3 beta-1 subunit) (Clathrin assembly protein complex 3 beta-1 large chain) Length = 1094 Score = 72.8 bits (177), Expect = 4e-13 Identities = 41/109 (37%), Positives = 66/109 (60%), Gaps = 1/109 (0%) Frame = +3 Query: 132 AGGGDRCVFGR*ARRG-DMSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAA 308 +GGG+ G+ A SG + S KK E +LK+ L S + DA+K+++ Sbjct: 12 SGGGEATELGQEATSTISPSGAFGLFSSDLKKNE--DLKQMLESNKDSAKLDAMKRIVGM 69 Query: 309 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVN 455 + GK+ S LF VV + ++N+E+KKLVY+YL+ YA+ Q DLA+L+++ Sbjct: 70 IAKGKNASELFPAVVKNVASKNIEIKKLVYVYLVRYAEEQQDLALLSIS 118
>AP3B1_MOUSE (Q9Z1T1) AP-3 complex subunit beta-1 (Adapter-related protein| complex 3 beta-1 subunit) (Beta3A-adaptin) (Adaptor protein complex AP-3 beta-1 subunit) (Clathrin assembly protein complex 3 beta-1 large chain) Length = 1105 Score = 72.8 bits (177), Expect = 4e-13 Identities = 41/109 (37%), Positives = 66/109 (60%), Gaps = 1/109 (0%) Frame = +3 Query: 132 AGGGDRCVFGR*ARRG-DMSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAA 308 +GGG+ G+ A SG + S KK E +LK+ L S + DA+K+++ Sbjct: 12 SGGGEAAELGQEATSTISPSGAFGLFSSDWKKNE--DLKQMLESNKDSAKLDAMKRIVGM 69 Query: 309 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVN 455 + GK+ S LF VV + ++N+E+KKLVY+YL+ YA+ Q DLA+L+++ Sbjct: 70 IAKGKNASELFPAVVKNVASKNIEIKKLVYVYLVRYAEEQQDLALLSIS 118
>AP3B2_MOUSE (Q9JME5) AP-3 complex subunit beta-2 (Adapter-related protein| complex 3 beta-2 subunit) (Beta3B-adaptin) (Adaptor protein complex AP-3 beta-2 subunit) (Clathrin assembly protein complex 3 beta-2 large chain) Length = 1082 Score = 66.2 bits (160), Expect = 4e-11 Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 3/92 (3%) Frame = +3 Query: 189 GHDSK---YFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNC 359 GHD FS+ K +LKE L++ + +A+K+++A + GK+ S LF VV Sbjct: 23 GHDPASGGIFSSDYKRH-DDLKEMLDTNKDSLKLEAMKRIVAMIARGKNASDLFPAVVKN 81 Query: 360 MQTENLELKKLVYLYLINYAKSQPDLAILAVN 455 + +N+E+KKLVY+YL+ YA+ Q DLA+L+++ Sbjct: 82 VACKNIEVKKLVYVYLVRYAEEQQDLALLSIS 113
>AP3B2_HUMAN (Q13367) AP-3 complex subunit beta-2 (Adapter-related protein| complex 3 beta-2 subunit) (Beta3B-adaptin) (Adaptor protein complex AP-3 beta-2 subunit) (AP-3 complex beta-2 subunit) (Clathrin assembly protein complex 3 beta-2 large chain) (Neu Length = 1082 Score = 66.2 bits (160), Expect = 4e-11 Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 3/92 (3%) Frame = +3 Query: 189 GHDSK---YFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNC 359 GHD FS+ K +LKE L++ + +A+K+++A + GK+ S LF VV Sbjct: 23 GHDPASGGIFSSDYKRH-DDLKEMLDTNKDSLKLEAMKRIVAMIARGKNASDLFPAVVKN 81 Query: 360 MQTENLELKKLVYLYLINYAKSQPDLAILAVN 455 + +N+E+KKLVY+YL+ YA+ Q DLA+L+++ Sbjct: 82 VACKNIEVKKLVYVYLVRYAEEQQDLALLSIS 113
>AP2B_SCHPO (O43005) AP-2 complex subunit beta (Beta-adaptin) (Clathrin| assembly protein large beta chain) (Clathrin assembly protein complex 2 beta large chain) Length = 677 Score = 64.3 bits (155), Expect = 1e-10 Identities = 36/85 (42%), Positives = 51/85 (60%) Frame = +3 Query: 198 SKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENL 377 S +FS+T + + + +KR A+KK IA ++ G D+SSLF V++ M++ NL Sbjct: 5 SSHFSSTAADLLAVFSSDNKDKSANKRISALKKAIAGISYGYDMSSLFPSVISSMESNNL 64 Query: 378 ELKKLVYLYLINYAKSQPDLAILAV 452 ELKKL YLYL YA +P A AV Sbjct: 65 ELKKLCYLYLKIYASVKPTEAKRAV 89
>AP3B_SCHPO (O13939) AP-3 complex subunit beta (Beta-adaptin) (Adapter-related| protein complex 3 beta subunit) (Clathrin assembly protein large beta chain) (Clathrin assembly protein complex 3 beta large chain) Length = 745 Score = 60.1 bits (144), Expect = 3e-09 Identities = 29/73 (39%), Positives = 49/73 (67%) Frame = +3 Query: 237 ELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINY 416 +L LNS + +A+ ++A M G+++S F DVV + +EN E+++LV++YL+ Y Sbjct: 37 DLLRLLNSNSDAGKLEAINFILAQMMHGENMSLYFPDVVKLVASENPEIRRLVHIYLLQY 96 Query: 417 AKSQPDLAILAVN 455 A+ PDLA+L+VN Sbjct: 97 AEFNPDLALLSVN 109
>AP4B1_HUMAN (Q9Y6B7) AP-4 complex subunit beta-1 (Adapter-related protein| complex 4 beta 1 subunit) (Beta subunit of AP-4) (AP-4 adapter complex beta subunit) Length = 739 Score = 57.8 bits (138), Expect = 1e-08 Identities = 30/79 (37%), Positives = 51/79 (64%), Gaps = 4/79 (5%) Frame = +3 Query: 231 IPELKEELNSQY----KDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELKKLVY 398 + ELK+ L + + + + ++ +++VI MT G D+S +F ++V T ++ KKLVY Sbjct: 10 VKELKKALCNPHIQADRLRYRNVIQRVIRYMTQGLDMSGVFMEMVKASATVDIVQKKLVY 69 Query: 399 LYLINYAKSQPDLAILAVN 455 LY+ YA +PDLA+LA+N Sbjct: 70 LYMCTYAPLKPDLALLAIN 88
>AP4B1_MOUSE (Q9WV76) AP-4 complex subunit beta-1 (Adapter-related protein| complex 4 beta-1 subunit) (Beta subunit of AP-4) (AP-4 adapter complex beta subunit) Length = 739 Score = 56.6 bits (135), Expect = 3e-08 Identities = 30/79 (37%), Positives = 51/79 (64%), Gaps = 4/79 (5%) Frame = +3 Query: 231 IPELKEELNSQY----KDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELKKLVY 398 + ELK+ L + + + + ++ +++VI MT G D+S +F ++V T ++ KKLVY Sbjct: 10 VKELKKALCNPHIQADRLRYRNVIQRVIRHMTQGLDMSDVFMEMVKASATVDIVQKKLVY 69 Query: 399 LYLINYAKSQPDLAILAVN 455 LY+ YA +PDLA+LA+N Sbjct: 70 LYMGTYAPLKPDLALLAIN 88
>AP3B_ASHGO (Q759E2) AP-3 complex subunit beta (Beta-adaptin) (Adapter-related| protein complex 3 beta subunit) (Clathrin assembly protein large beta chain) (Clathrin assembly protein complex 3 beta large chain) Length = 781 Score = 56.6 bits (135), Expect = 3e-08 Identities = 27/90 (30%), Positives = 59/90 (65%), Gaps = 3/90 (3%) Frame = +3 Query: 195 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGK---DVSSLFTDVVNCMQ 365 +S YF +K + L LNS+Y + +D +K+V++ M G ++ + F D+V + Sbjct: 32 ESSYFHYSKSIDSESLPGLLNSRYTREVRDGMKRVMSLMGSGDSSIELETHFADIVKNIG 91 Query: 366 TENLELKKLVYLYLINYAKSQPDLAILAVN 455 +++++++++V +YL+ YA++ P+LA+L++N Sbjct: 92 SDDVKVRRMVSVYLLRYAETNPNLALLSIN 121
>AP3B_YEAST (P46682) AP-3 complex subunit beta (Beta-adaptin) (Adapter-related| protein complex 3 beta subunit) (Clathrin assembly protein large beta chain) (Clathrin assembly protein complex 3 beta large chain) Length = 809 Score = 52.8 bits (125), Expect = 4e-07 Identities = 28/90 (31%), Positives = 54/90 (60%), Gaps = 3/90 (3%) Frame = +3 Query: 195 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKD---VSSLFTDVVNCMQ 365 +S Y ++ +L LNS+ + +DA+K++I+ M D V F DVV + Sbjct: 32 ESSYTYYSQNINPQQLVTLLNSRNSREVRDAMKRIISIMASDDDSIDVQLYFADVVKNIT 91 Query: 366 TENLELKKLVYLYLINYAKSQPDLAILAVN 455 T + ++K+L++LYL+ +A++ P+L +L++N Sbjct: 92 TNDTKVKRLIHLYLLRFAENDPNLTLLSIN 121
>AP2B_YEAST (P27351) AP-2 complex subunit beta (Beta-adaptin) (Clathrin| assembly protein large beta chain) (Clathrin assembly protein complex 2 beta large chain) Length = 700 Score = 34.3 bits (77), Expect = 0.15 Identities = 24/78 (30%), Positives = 48/78 (61%), Gaps = 7/78 (8%) Frame = +3 Query: 195 DSKYFSTTKKGEI-PELKEELNSQYKD---KRKDAVKKVIAAMTVGK--DVSSLFTDVVN 356 D K F+ K EI +L+ ++K +RK+A++K+IA + +G ++S LF++++ Sbjct: 3 DQKVFARYKANEIVTDLQHFGVKKFKSNITRRKNALRKIIANLVLGNYGEMSVLFSELLK 62 Query: 357 CMQTE-NLELKKLVYLYL 407 Q E +LE+K++ + Y+ Sbjct: 63 FWQIEDDLEVKRICHEYI 80
>AP3D_DROME (P54362) AP-3 complex subunit delta (Delta-adaptin) (Garnet| protein) (Delta adaptin subunit of AP-3) Length = 1034 Score = 33.9 bits (76), Expect = 0.20 Identities = 22/88 (25%), Positives = 40/88 (45%) Frame = +3 Query: 192 HDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTE 371 +++KY ST I E+K+EL + +AV K+ +G D+S +++ M + Sbjct: 32 NEAKYISTC----IEEIKQELRQDNISVKCNAVAKLTYIQMLGYDISWAGFNIIEVMSSS 87 Query: 372 NLELKKLVYLYLINYAKSQPDLAILAVN 455 K++ YL +L +L N Sbjct: 88 RFTCKRIGYLAASQCFHPDSELLMLTTN 115
>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 973 Score = 32.0 bits (71), Expect = 0.76 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = +3 Query: 237 ELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVN-CMQTENLELKKLVYLY 404 + ++ L +++ D +K ++ M G + L ++ M ++N ELKKL+Y Y Sbjct: 27 DFQKALEKGSDEQKIDTMKSILVTMLEGNPMPELLMHIIRFVMPSKNKELKKLLYFY 83
>ATIN_BHV1P (P30020) Alpha trans-inducing protein (Alpha-TIF)| Length = 504 Score = 31.2 bits (69), Expect = 1.3 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = -3 Query: 94 ARGGGRPACLRDGMGLDSARGSQAGVRAC 8 ARGG P+ +R G+GL ARGS AC Sbjct: 439 ARGGPGPSPVRSGLGLSRARGSPGPGPAC 467
>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 940 Score = 30.8 bits (68), Expect = 1.7 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = +3 Query: 231 IPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVN-CMQTENLELKKLVYLY 404 + LK L S+ + A+K ++ + G + S+ V+ M + N ELKKL+Y Y Sbjct: 17 VDALKTSLESKNDYVKISAMKTILRVVINGDSLPSILMHVIRFVMPSRNKELKKLLYYY 75
>AP3D1_HUMAN (O14617) AP-3 complex subunit delta-1 (Adapter-related protein| complex 3 delta-1 subunit) (Delta-adaptin 3) (AP-3 complex delta subunit) (Delta-adaptin) Length = 1153 Score = 30.8 bits (68), Expect = 1.7 Identities = 21/87 (24%), Positives = 37/87 (42%) Frame = +3 Query: 195 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 374 ++KY S I E+K+EL + +AV K+ +G D+S +++ M Sbjct: 32 EAKYISQC----IDEIKQELKQDNIAVKANAVCKLTYLQMLGYDISWAAFNIIEVMSASK 87 Query: 375 LELKKLVYLYLINYAKSQPDLAILAVN 455 K++ YL D+ +L N Sbjct: 88 FTFKRIGYLAASQSFHEGTDVIMLTTN 114
>AP3D1_BOVIN (Q865S1) AP-3 complex subunit delta-1 (Adapter-related protein| complex 3 delta-1 subunit) (Delta-adaptin 3) (AP-3 complex delta subunit) (Delta-adaptin) Length = 1207 Score = 30.8 bits (68), Expect = 1.7 Identities = 21/87 (24%), Positives = 37/87 (42%) Frame = +3 Query: 195 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 374 ++KY S I E+K+EL + +AV K+ +G D+S +++ M Sbjct: 32 EAKYISQC----IDEIKQELKQDNIAVKANAVCKLTYLQMLGYDISWAAFNIIEVMSASK 87 Query: 375 LELKKLVYLYLINYAKSQPDLAILAVN 455 K++ YL D+ +L N Sbjct: 88 FTFKRIGYLAASQCFHEGTDVIMLTTN 114
>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 30.8 bits (68), Expect = 1.7 Identities = 15/42 (35%), Positives = 19/42 (45%) Frame = -3 Query: 181 SPRRAYLPNTHRSPPPAAEPGVRDGGLRYARGGGRPACLRDG 56 +PR + N ++P A PG GG R A G P R G Sbjct: 226 TPRPRHSQNAAKTPSAAGSPGPSSGGDRPAAGAATPKSCRSG 267
>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 30.8 bits (68), Expect = 1.7 Identities = 15/42 (35%), Positives = 19/42 (45%) Frame = -3 Query: 181 SPRRAYLPNTHRSPPPAAEPGVRDGGLRYARGGGRPACLRDG 56 +PR + N ++P A PG GG R A G P R G Sbjct: 226 TPRPRHSQNAAKTPSAAGSPGPSSGGDRPAAGAATPKSCRSG 267
>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 30.8 bits (68), Expect = 1.7 Identities = 15/42 (35%), Positives = 19/42 (45%) Frame = -3 Query: 181 SPRRAYLPNTHRSPPPAAEPGVRDGGLRYARGGGRPACLRDG 56 +PR + N ++P A PG GG R A G P R G Sbjct: 226 TPRPRHSQNAAKTPSAAGSPGPSSGGDRPAAGAATPKSCRSG 267
>AP3D1_MOUSE (O54774) AP-3 complex subunit delta-1 (Adapter-related protein| complex 3 delta-1 subunit) (Delta-adaptin 3) (AP-3 complex delta subunit) (Delta-adaptin) (mBLVR1) Length = 1199 Score = 30.4 bits (67), Expect = 2.2 Identities = 21/87 (24%), Positives = 37/87 (42%) Frame = +3 Query: 195 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 374 ++KY S I E+K+EL + +AV K+ +G D+S +++ M Sbjct: 32 EAKYISQC----IDEIKQELKQDNIAVKANAVCKLTYLQMLGYDISWAAFNIIEVMSASK 87 Query: 375 LELKKLVYLYLINYAKSQPDLAILAVN 455 K++ YL D+ +L N Sbjct: 88 FTFKRVGYLAASQCFHEGTDVIMLTTN 114
>RRF_WIGBR (Q8D2G5) Ribosome recycling factor (Ribosome-releasing factor)| (RRF) Length = 185 Score = 29.6 bits (65), Expect = 3.8 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 4/46 (8%) Frame = +3 Query: 276 RKDA---VKKVIAAMTVGKDVSSLFTDVVNCMQTENLE-LKKLVYL 401 R+DA +KK+I A T+GKD F +V+ + +E KK++ L Sbjct: 132 RRDANEKIKKLIKAKTIGKDEDKKFQEVIQNLTNSRIEDTKKILKL 177
>KINH_STRPU (P35978) Kinesin heavy chain| Length = 1031 Score = 29.6 bits (65), Expect = 3.8 Identities = 12/26 (46%), Positives = 13/26 (50%) Frame = -3 Query: 151 HRSPPPAAEPGVRDGGLRYARGGGRP 74 H P P G+R GG RGGG P Sbjct: 925 HPPPSPGGSTGIRGGGYSGIRGGGSP 950
>VCOM_ADEM1 (O10442) Minor core protein (Protein V) (pV)| Length = 228 Score = 29.3 bits (64), Expect = 4.9 Identities = 17/40 (42%), Positives = 20/40 (50%) Frame = +2 Query: 23 RLAPPRRVQSHPIAQTGRPPATARISEASITNPGLRSRRR 142 R PP V+ HP + RPPA A I+ P R RRR Sbjct: 130 RAVPPVGVRYHPSIEVARPPA------ARISPPRRRRRRR 163
>RENBP_PIG (P17560) N-acylglucosamine 2-epimerase (EC 5.1.3.8) (GlcNAc| 2-epimerase) (N-acetyl-D-glucosamine 2-epimerase) (AGE) (Renin-binding protein) (RnBP) Length = 402 Score = 29.3 bits (64), Expect = 4.9 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 4/86 (4%) Frame = +2 Query: 17 HTRLAPPRRVQSHPIAQTGRPPATAR--ISEASITNPGLRSRRR*PVCIWQVGSPGRYER 190 H R+APP + + + + GRP R SE T +W+V + RY+ Sbjct: 94 HARVAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNE--------LWRVTAEARYQS 145 Query: 191 ARLQVL--LHHQKGGDPRAQGGAQLP 262 + ++ + H DP G QLP Sbjct: 146 EAVDMMDQIVHWVREDPSGLGRPQLP 171
>RNZ_BRAJA (Q89NF8) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3| endonuclease) Length = 301 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/36 (41%), Positives = 17/36 (47%) Frame = -3 Query: 151 HRSPPPAAEPGVRDGGLRYARGGGRPACLRDGMGLD 44 H P A GV DG LR GRP + DG +D Sbjct: 157 HLLPDRLASLGVPDGPLRGELAQGRPVVIEDGRTID 192
>FEN1A_ORYSA (Q9SXQ6) Flap endonuclease 1a (EC 3.1.-.-) (OsFEN-1a)| Length = 380 Score = 28.9 bits (63), Expect = 6.4 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%) Frame = +3 Query: 225 GEIPELKEELNSQYKDKRKDAVKKVIAAMTVG-KDVSSLFTD-VVNCMQTENLELKKLVY 398 G+ P+LK++ ++ KR+DA K++ A+ G KD F+ V + N E K+L+ Sbjct: 88 GKPPDLKKQELAKRYSKREDATKELTEAVEEGDKDAIEKFSKRTVKVTKQHNEECKRLLR 147 Query: 399 L 401 L Sbjct: 148 L 148
>LEA2_CICAR (O49817) Late embryogenesis abundant protein 2 (CapLEA-2)| Length = 155 Score = 28.5 bits (62), Expect = 8.4 Identities = 15/51 (29%), Positives = 23/51 (45%) Frame = +3 Query: 183 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSS 335 M+ HD Y + KG E ++ +DK + A +K A KD +S Sbjct: 1 MTSHDQSYRAGEAKGRTEEKTNQMIGNIEDKAQAAKEKAQQAAQTAKDKTS 51
>ATRIP_DROME (Q9VVN4) ATR-interacting protein mus304 (Mutagen-sensivite protein| 304) Length = 846 Score = 28.5 bits (62), Expect = 8.4 Identities = 15/64 (23%), Positives = 31/64 (48%) Frame = +3 Query: 195 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 374 DSK + K GE+ L++EL + + ++K+ A +D + + + ++ Sbjct: 201 DSKERNEIKSGEVSLLRDELKHLRQQLQASKMEKLALADETNRDCNKKVAEAAKQIAAKD 260 Query: 375 LELK 386 +ELK Sbjct: 261 IELK 264
>ROCK1_RABIT (O77819) Rho-associated protein kinase 1 (EC 2.7.11.1)| (Rho-associated, coiled-coil-containing protein kinase 1) (p160 ROCK-1) (p160ROCK) (cAMP-dependent protein kinase ROCK-I) (CePKA) (Corneal epithelial Rho-associated-Ser/Thr kinase 1) (HEB Length = 1354 Score = 28.5 bits (62), Expect = 8.4 Identities = 13/33 (39%), Positives = 23/33 (69%) Frame = +3 Query: 201 KYFSTTKKGEIPELKEELNSQYKDKRKDAVKKV 299 +YFST K ++ ELKEE+ ++K ++ +KK+ Sbjct: 850 QYFSTLYKTQVKELKEEI----EEKNRENLKKI 878
>ROCK1_HUMAN (Q13464) Rho-associated protein kinase 1 (EC 2.7.11.1)| (Rho-associated, coiled-coil-containing protein kinase 1) (p160 ROCK-1) (p160ROCK) (NY-REN-35 antigen) Length = 1354 Score = 28.5 bits (62), Expect = 8.4 Identities = 13/33 (39%), Positives = 23/33 (69%) Frame = +3 Query: 201 KYFSTTKKGEIPELKEELNSQYKDKRKDAVKKV 299 +YFST K ++ ELKEE+ ++K ++ +KK+ Sbjct: 850 QYFSTLYKTQVKELKEEI----EEKNRENLKKI 878
>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog| (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) (Homologous to ALR protein) Length = 4911 Score = 28.5 bits (62), Expect = 8.4 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%) Frame = -3 Query: 190 PLISPRRAYLPNTHRSP--PPAAEPGVRDGGLRYARGGG 80 P + PR A P R P P A G+R G R+ GG Sbjct: 2449 PPLGPRYAVFPKDQRGPYPPDVASMGMRPHGFRFGFPGG 2487
>KR105_HUMAN (P60370) Keratin-associated protein 10-5 (Keratin-associated| protein 10.5) (High sulfur keratin-associated protein 10.5) (Keratin-associated protein 18-5) (Keratin-associated protein 18.5) Length = 271 Score = 28.5 bits (62), Expect = 8.4 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 6/63 (9%) Frame = +2 Query: 284 CCQESDC------SNDCWKRCLIIVYGCCELYAD*ELGAEKTSILISHQLC*KSTRPSDT 445 CCQ+S C S+ C + C + V CC+ +E +S H C + S Sbjct: 110 CCQQSSCQPTCCASSSCQQSCCVPV--CCKPVCCVPTCSEDSSSCCQHSSCQPTCCTSSP 167 Query: 446 CRE 454 C++ Sbjct: 168 CQQ 170
>NOLA1_HUMAN (Q9NY12) H/ACA ribonucleoprotein complex subunit 1 (Nucleolar| protein family A member 1) (snoRNP protein GAR1) Length = 217 Score = 28.5 bits (62), Expect = 8.4 Identities = 19/48 (39%), Positives = 20/48 (41%) Frame = -3 Query: 163 LPNTHRSPPPAAEPGVRDGGLRYARGGGRPACLRDGMGLDSARGSQAG 20 LP P P E G GG R RGGGR R G RG + G Sbjct: 152 LPLQRFLPRPPGEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGG 199
>ROCK1_BOVIN (Q8MIT6) Rho-associated protein kinase 1 (EC 2.7.11.1)| (Rho-associated, coiled-coil-containing protein kinase 1) (p160 ROCK-1) (p160ROCK) (Fragment) Length = 441 Score = 28.5 bits (62), Expect = 8.4 Identities = 13/33 (39%), Positives = 23/33 (69%) Frame = +3 Query: 201 KYFSTTKKGEIPELKEELNSQYKDKRKDAVKKV 299 +YFST K ++ ELKEE+ ++K ++ +KK+ Sbjct: 257 QYFSTLYKTQVKELKEEI----EEKNRENLKKI 285
>ROCK1_PANTR (P61584) Rho-associated protein kinase 1 (EC 2.7.11.1)| (Rho-associated, coiled-coil-containing protein kinase 1) (p160 ROCK-1) (p160ROCK) (Fragment) Length = 1003 Score = 28.5 bits (62), Expect = 8.4 Identities = 13/33 (39%), Positives = 23/33 (69%) Frame = +3 Query: 201 KYFSTTKKGEIPELKEELNSQYKDKRKDAVKKV 299 +YFST K ++ ELKEE+ ++K ++ +KK+ Sbjct: 499 QYFSTLYKTQVKELKEEI----EEKNRENLKKI 527
>TARSH_HUMAN (Q7Z7G0) Target of Nesh-SH3 precursor (Tarsh) (Nesh-binding| protein) (NeshBP) (ABI gene family member 3-binding protein) Length = 1075 Score = 28.5 bits (62), Expect = 8.4 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = +2 Query: 35 PRRVQSHPIAQTGRPPATARISEASITNPGLRSRRR 142 PRR P TG+P + IS IT P LRS R Sbjct: 716 PRRKPLPPNNVTGKPGSAGIISSGPITTPPLRSTPR 751
>NELFA_HUMAN (Q9H3P2) Negative elongation factor A (NELF-A) (Wolf-Hirschhorn| syndrome candidate 2 protein) Length = 549 Score = 28.5 bits (62), Expect = 8.4 Identities = 12/38 (31%), Positives = 19/38 (50%) Frame = -3 Query: 226 PFLVVEKYLESCPLISPRRAYLPNTHRSPPPAAEPGVR 113 P L YL S P + P +Y+P++ P P++ R Sbjct: 338 PALPSTSYLPSTPSVVPASSYIPSSETPPAPSSREASR 375
>DPOLA_ORYSA (O48653) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)| Length = 1534 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = -3 Query: 223 FLVVEKYLESCPLISPRRAYLPNTHRSPPPAAEPGVRDGGLRYARG 86 F+V +K+ S S +R P+T + P A+P + D G +G Sbjct: 852 FIVPDKFARSKEFNSTKRKMNPDTEAARPDEADPSIDDEGHHVDQG 897 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,170,364 Number of Sequences: 219361 Number of extensions: 1045552 Number of successful extensions: 4230 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 3970 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4223 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
