Clone Information

BLAST Search Result

Clone Name	bastl53f08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	VE2_HPV5B (P26545) Regulatory protein E2	38	0.011
2	SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (S...	34	0.13
3	FILA_HUMAN (P20930) Filaggrin	34	0.16
4	VE2_HPV05 (P06921) Regulatory protein E2	33	0.21
5	RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-ri...	33	0.28
6	RSRC1_HUMAN (Q96IZ7) Arginine/serine-rich coiled coil protein 1	32	0.48
7	CROP_PONPY (Q5R8W6) Cisplatin resistance-associated overexpresse...	32	0.62
8	CROP_MOUSE (Q5SUF2) Cisplatin resistance-associated overexpresse...	32	0.62
9	CROP_HUMAN (O95232) Cisplatin resistance-associated overexpresse...	32	0.62
10	CROP_BOVIN (Q3SX41) Cisplatin resistance-associated overexpresse...	32	0.62
11	RSRC1_RAT (Q5PPJ2) Arginine/serine-rich coiled coil protein 1	32	0.62
12	RSRC1_MOUSE (Q9DBU6) Arginine/serine-rich coiled coil protein 1	32	0.62
13	PININ_PONPY (Q5R5X0) Pinin	32	0.62
14	VE2_HPV14 (P36783) Regulatory protein E2	32	0.81
15	VGLZ_EHV1K (P32515) Glycoprotein precursor	32	0.81
16	CYLC2_BOVIN (Q28092) Cylicin-2 (Cylicin II) (Multiple-band polyp...	32	0.81
17	PININ_HUMAN (Q9H307) Pinin (140 kDa nuclear and cell adhesion-re...	32	0.81
18	SFRS6_RABIT (O18776) Splicing factor, arginine/serine-rich 6 (Pr...	32	0.81
19	NCOR1_MOUSE (Q60974) Nuclear receptor corepressor 1 (N-CoR1) (N-...	31	1.1
20	RAI1_MOUSE (Q61818) Retinoic acid-induced protein 1	31	1.1
21	SEM3D_HUMAN (O95025) Semaphorin-3D precursor	31	1.1
22	NEUM_CARAU (P17691) Neuromodulin (Axonal membrane protein GAP-43...	31	1.4
23	SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pr...	31	1.4
24	NIA_CUCMA (P17569) Nitrate reductase [NADH] (EC 1.7.1.1) (NR)	31	1.4
25	SEM3D_MOUSE (Q8BH34) Semaphorin-3D precursor	31	1.4
26	PININ_CANFA (P79149) Pinin	30	1.8
27	SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (S...	30	1.8
28	CWC25_YARLI (Q6C1V6) Pre-mRNA-splicing factor CWC25	30	1.8
29	SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4	30	2.4
30	SUWA_DROME (P12297) Protein suppressor of white apricot	30	2.4
31	CVCB_PEA (P13919) Convicilin precursor (Fragment)	28	2.6
32	BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)	30	3.1
33	VE2_HPV12 (P36782) Regulatory protein E2	30	3.1
34	FBX41_HUMAN (Q8TF61) F-box only protein 41	30	3.1
35	DDX46_RAT (Q62780) Probable ATP-dependent RNA helicase DDX46 (EC...	29	4.0
36	DDX46_PONPY (Q5R6D8) Probable ATP-dependent RNA helicase DDX46 (...	29	4.0
37	DDX46_MOUSE (Q569Z5) Probable ATP-dependent RNA helicase DDX46 (...	29	4.0
38	DDX46_HUMAN (Q7L014) Probable ATP-dependent RNA helicase DDX46 (...	29	4.0
39	SNIP1_HUMAN (Q8TAD8) Smad nuclear-interacting protein 1	29	4.0
40	OXDA_RHOTO (P80324) D-amino-acid oxidase (EC 1.4.3.3) (DAMOX) (D...	29	4.0
41	SPEN_DROME (Q8SX83) Protein split ends	29	5.3
42	SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pr...	29	5.3
43	TIR1_YEAST (P10863) Cold shock-induced protein TIR1 precursor (S...	28	6.9
44	YXX7_CAEEL (Q18674) Hypothetical protein C47E12.7	28	6.9
45	RL20_UREPA (Q9PQR2) 50S ribosomal protein L20	28	6.9
46	J1L_HCMVA (P17143) Hypothetical protein J1L	28	6.9
47	MDN1_GIALA (Q8T5T1) Midasin (MIDAS-containing protein)	28	6.9
48	CISY2_BACSU (P39120) Citrate synthase 2 (EC 2.3.3.1) (Citrate sy...	28	6.9
49	FBX41_MOUSE (Q6NS60) F-box only protein 41	28	6.9
50	PCDGM_HUMAN (Q9Y5F6) Protocadherin gamma C5 precursor (PCDH-gamm...	28	6.9
51	NCOR1_HUMAN (O75376) Nuclear receptor corepressor 1 (N-CoR1) (N-...	28	6.9
52	HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)	28	6.9
53	PRM2_PIG (P19757) Protamine-2 (Protamine-P2) (Sperm histone P2)	28	6.9
54	NBP1_YEAST (P52919) NAP1-binding protein	28	9.0
55	LYPD4_BOVIN (Q32LD3) Ly6/PLAUR domain-containing protein 4 precu...	28	9.0
56	YGS6_YEAST (P46945) Hypothetical 63.3 kDa protein in MPT5-SAE2 i...	28	9.0
57	HSP1_DROAU (P42132) Sperm protamine P1	28	9.0
58	HSP1_AEPRU (Q9GLP9) Sperm protamine P1	28	9.0
59	VE2_HPV36 (P50809) Regulatory protein E2	28	9.0
60	TOPRS_MOUSE (Q80Z37) Ubiquitin-protein E3 ligase Topors (EC 6.3....	28	9.0
61	PRP5_YARLI (Q6CCZ1) Pre-mRNA-processing ATP-dependent RNA helica...	28	9.0
62	SON_HUMAN (P18583) SON protein (SON3) (Negative regulatory eleme...	28	9.0
63	U2AFM_HUMAN (Q15696) U2 small nuclear ribonucleoprotein auxiliar...	28	9.0
64	SON_MOUSE (Q9QX47) SON protein	28	9.0
65	PININ_MOUSE (O35691) Pinin	28	9.0
66	NIPBL_HUMAN (Q6KC79) Nipped-B-like protein (Delangin) (SCC2 homo...	28	9.0
67	NCOR1_XENLA (Q8QG78) Nuclear receptor corepressor 1 (N-CoR1) (N-...	28	9.0
68	FA61A_PONPY (Q5R4R4) Protein FAM61A	28	9.0
69	FA61A_HUMAN (Q8ND56) Protein FAM61A (Putative alpha synuclein-bi...	28	9.0

>VE2_HPV5B (P26545) Regulatory protein E2|
          Length = 514

 Score = 37.7 bits (86), Expect = 0.011
 Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 6/116 (5%)
 Frame = -1

Query: 379 RTPTSHLPAHQHTQR*RLP------TESRGTRKARGPTETATGSQTESGGSKQAMNSNSR 218
           +TPT+   A   T R          TE+RG R  R P+  +  SQT+   S+    S SR
Sbjct: 218 KTPTTSTTAVDSTSRQLTTSKQPQQTETRGRRYGRRPSSKSRRSQTQQRRSRSRHRSRSR 277

Query: 217 AQRDHGAPQWQHSTDQKRKRTAPTGRSKWGKRNRRIRPRETAHVRHCRGTKIKRRA 50
           + R     Q   +    R R+   G+++      R R R  +  R   G   +RR+
Sbjct: 278 S-RSRSKSQTHTTWSTTRSRSTSVGKTRALTSRSRSRGRSPSTCRRGGGRSPRRRS 332

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>SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2) (Clk4-associating SR-related
           protein)
          Length = 653

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 23/113 (20%), Positives = 50/113 (44%)
 Frame = -1

Query: 379 RTPTSHLPAHQHTQR*RLPTESRGTRKARGPTETATGSQTESGGSKQAMNSNSRAQRDHG 200
           R P  H  +H  +     P+ SR   ++   +++ + S+++S    Q+ +S S  +    
Sbjct: 463 RGPRHHSSSHSRSSWSLSPSRSRSVTRSGSRSQSRSRSRSQSHSQSQS-HSPSPPREKLT 521

Query: 199 APQWQHSTDQKRKRTAPTGRSKWGKRNRRIRPRETAHVRHCRGTKIKRRASKR 41
            P    +  +K K+T P    + G    ++ P+E   +R  +    + +A K+
Sbjct: 522 RPAASPAVGEKLKKTEPAAGKETGAAKPKLTPQERLKLRMQKALNRQFKADKK 574

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>FILA_HUMAN (P20930) Filaggrin|
          Length = 4061

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 6/120 (5%)
 Frame = -1

Query: 370 TSHLPAHQHTQR*RLPTESRGTRKARGPTETATGSQTESGGSKQAMNSNSRAQRDHGAPQ 191
           +S +   +H    ++P +   TRK RG     +  +   G S+ +   +  A R+H    
Sbjct: 268 SSQVNRSRHENTSQVPLQESRTRKRRG--SRVSQDRDSEGHSEDSERHSGSASRNHHGSA 325

Query: 190 WQHSTDQKR------KRTAPTGRSKWGKRNRRIRPRETAHVRHCRGTKIKRRASKRDRWG 29
           W+ S D  R      +  A  G S    R    R  ET+       +  + R+S  +R G
Sbjct: 326 WEQSRDGSRHPRSHDEDRASHGHSADSSRQSGTRHAETSSRGQTASSHEQARSSPGERHG 385



 Score = 29.3 bits (64), Expect = 4.0
 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
 Frame = -1

Query: 370  TSHLPAHQHTQR*RLPTESRGTRKARGPTETATGSQTESGGSKQAMNSNSRAQRDH-GAP 194
            ++H    +H+Q   +  +S G+R++R    + +      G S+ +   +  A R+H G+ 
Sbjct: 3186 STHADISRHSQA--VQGQSEGSRRSRRQGSSVSQDSDSEGHSEDSERWSGSASRNHRGSV 3243

Query: 193  QWQHSTDQKRKRTAPTGRSKWGKRNRRIRPRETAHVRHCRG 71
            Q Q     +  R+    R+  G    R R   T H     G
Sbjct: 3244 QEQSRHGSRHPRSHHEDRAGHGHSADRSRQSGTRHAETSSG 3284



 Score = 28.5 bits (62), Expect = 6.9
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 6/103 (5%)
 Frame = -1

Query: 319  ESRGTRKARGPTETATGSQTESGGSKQAMNSNSRAQRDHGAPQWQHSTDQKR------KR 158
            +S G R +R    + +      G S+ +   +  A R+H    W+ S D  R      + 
Sbjct: 1904 QSSGPRTSRNQGSSVSQDSDSQGHSEDSERWSGSASRNHLGSAWEQSRDGSRHPGSHHED 1963

Query: 157  TAPTGRSKWGKRNRRIRPRETAHVRHCRGTKIKRRASKRDRWG 29
             A  G S    R    R  E++       +  + R+S  +R G
Sbjct: 1964 RAGHGHSADSSRQSGTRHTESSSRGQAASSHEQARSSAGERHG 2006



 Score = 28.1 bits (61), Expect = 9.0
 Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
 Frame = -1

Query: 370  TSHLPAHQHTQR*RLPTESRGTRKARGPTETATGSQTESGGSKQAMN-SNSRAQRDHGAP 194
            ++H    +H+Q   +  +S G+R++R    + +      G S+ +   S S ++  HG+ 
Sbjct: 2862 STHADISRHSQA--VQGQSEGSRRSRRQGSSVSQDSDSEGHSEDSERWSGSASRNHHGSA 2919

Query: 193  QWQHSTDQKRKRTAPTGRSKWGKRNRRIRPRETAHVRHCRG 71
            Q Q     +  R+    R+  G      R   T H +   G
Sbjct: 2920 QEQLRDGSRHPRSHQEDRAGHGHSADSSRQSGTRHTQTSSG 2960

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>VE2_HPV05 (P06921) Regulatory protein E2|
          Length = 514

 Score = 33.5 bits (75), Expect = 0.21
 Identities = 25/91 (27%), Positives = 38/91 (41%)
 Frame = -1

Query: 322 TESRGTRKARGPTETATGSQTESGGSKQAMNSNSRAQRDHGAPQWQHSTDQKRKRTAPTG 143
           TE+RG R  R P+  +  SQT+   S+    S SR+ R     Q   +    R R+    
Sbjct: 243 TETRGRRYGRRPSSKSRRSQTQQRRSRSRHRSRSRS-RSRSKSQTHTTRSTTRSRSTSLT 301

Query: 142 RSKWGKRNRRIRPRETAHVRHCRGTKIKRRA 50
           +++      R R R     R   G   +RR+
Sbjct: 302 KTRALTSRSRSRGRSPTTCRRGGGRSPRRRS 332

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>RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-rich 7 (p54)|
          Length = 452

 Score = 33.1 bits (74), Expect = 0.28
 Identities = 24/95 (25%), Positives = 37/95 (38%)
 Frame = -1

Query: 319 ESRGTRKARGPTETATGSQTESGGSKQAMNSNSRAQRDHGAPQWQHSTDQKRKRTAPTGR 140
           + R  R++R P    + S      S+       R +R     +   S D+ R R     R
Sbjct: 268 DDRDRRRSRSPRRRRSPSPRRRRDSRDRDRDRDRDRR-RSRDRRSRSRDRDRDRDRKRSR 326

Query: 139 SKWGKRNRRIRPRETAHVRHCRGTKIKRRASKRDR 35
           S+  KR  R R  +    +  R    +RR+  RDR
Sbjct: 327 SRDRKRRSRSRDNKDRDRKRSRSRDRRRRSKSRDR 361

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>RSRC1_HUMAN (Q96IZ7) Arginine/serine-rich coiled coil protein 1|
          Length = 334

 Score = 32.3 bits (72), Expect = 0.48
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
 Frame = -1

Query: 322 TESRGTRKARGPTETATGSQTESGGSKQAMNSNSRAQRDHGAPQWQHSTDQKRKRTAPTG 143
           ++SR   + +G  ++ + S++ S   +   +S  R +R   +    + + +KR R+   G
Sbjct: 30  SDSRTYSRKKGGRKSRSKSRSWSRDLQPRSHSYDRRRRHRSSSSSSYGSRRKRSRSRSRG 89

Query: 142 R----------SKWGKRNRRIRPRETAHVRHC-RGTKIKRRASKRDR 35
           R          SK   R  R RPR  +H R   R +  + R+  RDR
Sbjct: 90  RGKSYRVQRSRSKSRTRRSRSRPRLRSHSRSSERSSHRRTRSRSRDR 136

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>CROP_PONPY (Q5R8W6) Cisplatin resistance-associated overexpressed protein|
          Length = 432

 Score = 32.0 bits (71), Expect = 0.62
 Identities = 23/90 (25%), Positives = 37/90 (41%)
 Frame = -1

Query: 304 RKARGPTETATGSQTESGGSKQAMNSNSRAQRDHGAPQWQHSTDQKRKRTAPTGRSKWGK 125
           RK R   E     +      ++   S SR        +   S D KR R+    RS+  +
Sbjct: 270 RKRRREEEEREKERARDRERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRERRRSR-SR 328

Query: 124 RNRRIRPRETAHVRHCRGTKIKRRASKRDR 35
             RR R  + +  +H   ++ +RR+  RDR
Sbjct: 329 DRRRSRSHDRSERKHRSRSRDRRRSKSRDR 358

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>CROP_MOUSE (Q5SUF2) Cisplatin resistance-associated overexpressed protein|
          Length = 432

 Score = 32.0 bits (71), Expect = 0.62
 Identities = 23/90 (25%), Positives = 37/90 (41%)
 Frame = -1

Query: 304 RKARGPTETATGSQTESGGSKQAMNSNSRAQRDHGAPQWQHSTDQKRKRTAPTGRSKWGK 125
           RK R   E     +      ++   S SR        +   S D KR R+    RS+  +
Sbjct: 270 RKRRREEEEREKERARDRERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRDRRRSR-SR 328

Query: 124 RNRRIRPRETAHVRHCRGTKIKRRASKRDR 35
             RR R  + +  +H   ++ +RR+  RDR
Sbjct: 329 DRRRSRSHDRSERKHRSRSRDRRRSKSRDR 358

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>CROP_HUMAN (O95232) Cisplatin resistance-associated overexpressed protein|
           (cAMP regulatory element associated protein 1)
           (CRE-associated protein 1) (CREAP-1) (Luc7A) (Okadaic
           acid-inducible phosphoprotein OA48-18)
          Length = 432

 Score = 32.0 bits (71), Expect = 0.62
 Identities = 23/90 (25%), Positives = 37/90 (41%)
 Frame = -1

Query: 304 RKARGPTETATGSQTESGGSKQAMNSNSRAQRDHGAPQWQHSTDQKRKRTAPTGRSKWGK 125
           RK R   E     +      ++   S SR        +   S D KR R+    RS+  +
Sbjct: 270 RKRRREEEEREKERARDRERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRERRRSR-SR 328

Query: 124 RNRRIRPRETAHVRHCRGTKIKRRASKRDR 35
             RR R  + +  +H   ++ +RR+  RDR
Sbjct: 329 DRRRSRSHDRSERKHRSRSRDRRRSKSRDR 358

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>CROP_BOVIN (Q3SX41) Cisplatin resistance-associated overexpressed protein|
          Length = 432

 Score = 32.0 bits (71), Expect = 0.62
 Identities = 23/90 (25%), Positives = 37/90 (41%)
 Frame = -1

Query: 304 RKARGPTETATGSQTESGGSKQAMNSNSRAQRDHGAPQWQHSTDQKRKRTAPTGRSKWGK 125
           RK R   E     +      ++   S SR        +   S D KR R+    RS+  +
Sbjct: 270 RKRRREEEEREKERARDRERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRERRRSR-SR 328

Query: 124 RNRRIRPRETAHVRHCRGTKIKRRASKRDR 35
             RR R  + +  +H   ++ +RR+  RDR
Sbjct: 329 DRRRSRSHDRSERKHRSRSRDRRRSKSRDR 358

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>RSRC1_RAT (Q5PPJ2) Arginine/serine-rich coiled coil protein 1|
          Length = 334

 Score = 32.0 bits (71), Expect = 0.62
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
 Frame = -1

Query: 322 TESRGTRKARGPTETATGSQTESGGSKQAMNSNSRAQRDHGAPQWQHSTDQKRKRTAPTG 143
           ++SR   + +G     + S++ S   +   +S  R +R   +    + + +KR R+   G
Sbjct: 30  SDSRTYSRKKGGRRPRSESRSWSRDRQPRSHSYERRRRRRSSSSSSYGSRRKRSRSRSRG 89

Query: 142 R----------SKWGKRNRRIRPRETAHVRHC-RGTKIKRRASKRDR 35
           R          SK   R  R RPR  +H R   R +  + R+  RDR
Sbjct: 90  RGKSYRVQRSRSKSRTRRSRSRPRPRSHSRSSERSSHRRTRSRSRDR 136

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>RSRC1_MOUSE (Q9DBU6) Arginine/serine-rich coiled coil protein 1|
          Length = 334

 Score = 32.0 bits (71), Expect = 0.62
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
 Frame = -1

Query: 322 TESRGTRKARGPTETATGSQTESGGSKQAMNSNSRAQRDHGAPQWQHSTDQKRKRTAPTG 143
           ++SR   + +G     + S++ S   +   +S  R +R   +    + + +KR R+   G
Sbjct: 30  SDSRTYSRKKGGRRPRSDSRSWSRDRQLRSHSYERRRRRRSSSSSSYGSRRKRSRSRSRG 89

Query: 142 R----------SKWGKRNRRIRPRETAHVRHC-RGTKIKRRASKRDR 35
           R          SK   R  R RPR  +H R   R +  + R+  RDR
Sbjct: 90  RGKPYRVQRSRSKSRTRRSRSRPRPRSHSRSSERSSHRRTRSRSRDR 136

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>PININ_PONPY (Q5R5X0) Pinin|
          Length = 719

 Score = 32.0 bits (71), Expect = 0.62
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
 Frame = -1

Query: 316 SRGTRKARGPTETATGSQTESGGSKQAMNSNSRAQ-RDHGAPQWQHSTDQKRKRTAPTGR 140
           S  +R +   + + +GS +    S  + +S SR++ R  G     H+ D+K +R+    R
Sbjct: 602 SSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRGRG-----HNRDRKHRRSVDRKR 656

Query: 139 SKWGKRNRRIRPRETAHVRHCRGTKIKRRASKRDR 35
                  R  +  +    R  +G+K K   S R R
Sbjct: 657 GDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKR 691

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>VE2_HPV14 (P36783) Regulatory protein E2|
          Length = 483

 Score = 31.6 bits (70), Expect = 0.81
 Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
 Frame = -1

Query: 343 TQR*RLPTESRGTRKARGPTETATGSQTESGGSKQAMNSNSRAQRDHGAPQWQHSTDQKR 164
           + R R  TE+R  R++R  + + + S++      ++ +S  R++    +   Q    +  
Sbjct: 254 SSRTRRTTETRQRRRSRSKSRSRSRSRSRLRSRSRSQSSERRSRYRSRSRSRQKEVSRIT 313

Query: 163 KRTAPTGR---SKWGKRNRRIRPRETAHVRHCRGTKIKRRASKRDRWGVVGVGERGL 2
             T   GR   S   KR++R R R     R  R +     +SKR R       +RG+
Sbjct: 314 TTTRGRGRGSSSTSSKRSQRARGRGRGGSRGRRSSSTSPTSSKRSRRESESSRQRGI 370

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>VGLZ_EHV1K (P32515) Glycoprotein precursor|
          Length = 383

 Score = 31.6 bits (70), Expect = 0.81
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = -1

Query: 325 PTESRGTRKARGPTETATGSQTESGGSKQAMNSNSRAQRDHGAPQWQHSTDQKRKRTAPT 146
           PT S  T  +  PT T T S + +   K A +   RA    G+PQ    T     R  P+
Sbjct: 53  PTTSPPTTSSSPPTSTHTSSPSTANAQKHAGHHRGRAGGRRGSPQGGSHTTPHPDRLTPS 112

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>CYLC2_BOVIN (Q28092) Cylicin-2 (Cylicin II) (Multiple-band polypeptide II)|
          Length = 488

 Score = 31.6 bits (70), Expect = 0.81
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 17/111 (15%)
 Frame = -1

Query: 319 ESRGTRKARGPTETATGSQTESG-----------GSKQAMNSNSRAQRDHGAPQWQHSTD 173
           + +G + ++   E+AT S+ E G           GSK+   S+S+A+ D G  +     D
Sbjct: 328 DKKGKKGSKKGKESATESEGEKGDAKKDDKKGKKGSKKGKESDSKAEGDKGDAKKDDKKD 387

Query: 172 QKRKR------TAPTGRSKWGKRNRRIRPRETAHVRHCRGTKIKRRASKRD 38
           +K  +      T   G  K  K+++  +   T        +K K+ A K+D
Sbjct: 388 KKGSKKGKESATESEGEKKDSKKDKAGKKDPTKAGEKGDESKDKKDAKKKD 438

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>PININ_HUMAN (Q9H307) Pinin (140 kDa nuclear and cell adhesion-related|
           phosphoprotein) (Domain-rich serine protein)
           (DRS-protein) (DRSP) (Melanoma metastasis clone A
           protein) (Desmosome-associated protein) (SR-like
           protein) (Nuclear protein SDK3)
          Length = 717

 Score = 31.6 bits (70), Expect = 0.81
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
 Frame = -1

Query: 316 SRGTRKARGPTETATGSQTESGGSKQAMNSNSRAQ-RDHGAPQWQHSTDQKRKRTAPTGR 140
           S  +R +   + + +GS +    S  + +S SR++ R  G     H+ D+K +R+    R
Sbjct: 600 SSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRGRG-----HNRDRKHRRSVDRKR 654

Query: 139 SKWGKRNRRIRPRETAHVRHCRGTKIKRRASKRDR 35
                  R  +  +    R  +G+K K   S R R
Sbjct: 655 RDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKR 689

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>SFRS6_RABIT (O18776) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing|
           factor SRP55) (Fragment)
          Length = 81

 Score = 31.6 bits (70), Expect = 0.81
 Identities = 16/66 (24%), Positives = 33/66 (50%)
 Frame = -1

Query: 229 SNSRAQRDHGAPQWQHSTDQKRKRTAPTGRSKWGKRNRRIRPRETAHVRHCRGTKIKRRA 50
           S SR++R   +     S  + R R+   GRS+   + R+ R +  +  +  RG++ + R+
Sbjct: 2   SRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGRKSRSKSKSKPKSDRGSRSRSRS 61

Query: 49  SKRDRW 32
             +D +
Sbjct: 62  RSKDEY 67

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>NCOR1_MOUSE (Q60974) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (Retinoid X|
            receptor-interacting protein 13) (RIP13)
          Length = 2453

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = -3

Query: 401  GDRRTPPPHSYESPACTPTH----AEIAVTYREPGNQESARTDRDRHRQSNRERRQQAS 237
            G + T PP  Y + + +P H    A  A   RE   +     +R+R R+  RER + A+
Sbjct: 1689 GTQVTFPPRPYNAASLSPGHPTHLAAAASAEREREREREKERERERERERERERERIAA 1747

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>RAI1_MOUSE (Q61818) Retinoic acid-induced protein 1|
          Length = 1889

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
 Frame = -1

Query: 295  RGPTETATGSQTESGGSKQAMNSN--SRAQRDHGAPQWQHSTDQKRKRTAPTGRSKWGKR 122
            R  +    G    SGG K+         +Q   G P    +  QK+   A    S + KR
Sbjct: 1449 RASSTQGGGEDNSSGGGKKPKTEELGPASQPPEGRPCQPQTRAQKQPGQA--SYSSYSKR 1506

Query: 121  NRRIRPR-ETAHVRHCRGTKIKRR 53
             R  R R +TAH   C+G   +RR
Sbjct: 1507 KRLSRGRGKTAHASPCKGRATRRR 1530

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>SEM3D_HUMAN (O95025) Semaphorin-3D precursor|
          Length = 777

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 244 KQAMNSNSRAQRDHGAPQWQHSTDQKRKR 158
           +Q  +   R QR+ G P+W+H  + K+KR
Sbjct: 732 EQMWHREKRRQRNKGGPKWKHMQEMKKKR 760

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>NEUM_CARAU (P17691) Neuromodulin (Axonal membrane protein GAP-43)|
           (Growth-associated protein 43)
          Length = 213

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 3/110 (2%)
 Frame = -3

Query: 425 PMEQDLSHGDRRTPPPHSYESPACTPTHAEIAVTYR---EPGNQESARTDRDRHRQSNRE 255
           P EQ  S      P   +  +P+ TPT  E     +   EP   E+     D   Q   E
Sbjct: 98  PAEQPNSPAAEAPPTAATDSAPSDTPTKEEAQEQLQDAEEPKETENTAAADDITTQKEEE 157

Query: 254 RRQQASNXXXXXXXXXXXXXTVAAQHRPEAETHRTDGQEQVGEAKPADPA 105
           + ++                          ET +TD +E + ++KPA+ A
Sbjct: 158 KEEEEEEEEEEEEAKRADVPDDTPAATESQETDQTDKKEALDDSKPAEEA 207

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>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing|
           factor SRP55)
          Length = 344

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 17/72 (23%), Positives = 33/72 (45%)
 Frame = -1

Query: 247 SKQAMNSNSRAQRDHGAPQWQHSTDQKRKRTAPTGRSKWGKRNRRIRPRETAHVRHCRGT 68
           S+    S SR++R   +     S  + R R+   GRS+   + R+ R +  +  +  RG+
Sbjct: 198 SRSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGRKSRSKSKSKPKSDRGS 257

Query: 67  KIKRRASKRDRW 32
               R+  +D +
Sbjct: 258 HSHSRSRSKDEY 269

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>NIA_CUCMA (P17569) Nitrate reductase [NADH] (EC 1.7.1.1) (NR)|
          Length = 918

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = -3

Query: 356 CTPTHAEIAVTYR---EPGNQESARTDRDRHRQSNRERRQ 246
           C P   EI + +    +PGNQ     DR+RH + + E  Q
Sbjct: 489 CKPHKGEIGIVFEHPTQPGNQSGGWMDRERHLEISTESNQ 528

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>SEM3D_MOUSE (Q8BH34) Semaphorin-3D precursor|
          Length = 777

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 244 KQAMNSNSRAQRDHGAPQWQHSTDQKRKR 158
           +Q      R QR+ G+P+W+H  + K+KR
Sbjct: 732 EQMWYKEKRRQRNKGSPKWKHMQEMKKKR 760

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>PININ_CANFA (P79149) Pinin|
          Length = 773

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
 Frame = -1

Query: 316 SRGTRKARGPTETATGSQTESGGSKQAMNSNSRAQ-RDHGAPQWQHSTDQKRKRTAPTGR 140
           S  +R +   + + +GS      S    +S SR++ R  G     H+ D+K +R+    R
Sbjct: 656 SSSSRSSSSSSSSTSGSSRRDSSSSTTSSSESRSRSRGRG-----HNRDRKHRRSVDRKR 710

Query: 139 SKWGKRNRRIRPRETAHVRHCRGTKIKRRASKRDR 35
                  R  +  +    R  +G+K K   S R R
Sbjct: 711 RDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKR 745

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>SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2)
          Length = 659

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 21/95 (22%), Positives = 43/95 (45%)
 Frame = -1

Query: 325 PTESRGTRKARGPTETATGSQTESGGSKQAMNSNSRAQRDHGAPQWQHSTDQKRKRTAPT 146
           P+ SR   ++R  + + + S++ S    Q+  S S A+     P    +  +K K+T P 
Sbjct: 487 PSRSRSLTRSRSHSPSPSQSRSRSRSRSQSP-SPSPAREKLTRPAASPAVGEKLKKTEPA 545

Query: 145 GRSKWGKRNRRIRPRETAHVRHCRGTKIKRRASKR 41
              + G    ++ P+E   +R  +    + +A K+
Sbjct: 546 AGKETGAAKPKLTPQEKLKLRMQKALNRQFKADKK 580

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>CWC25_YARLI (Q6C1V6) Pre-mRNA-splicing factor CWC25|
          Length = 561

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
 Frame = -1

Query: 259 ESGGSKQAMNSNSRAQRDHGAPQWQHSTDQKRKRTAPTGRSKWGKRNRRIRPRETAHVRH 80
           E G + +A  S  R++R+        S +++R+R          +RNRR   RE    R 
Sbjct: 154 ELGYTDEANESERRSRRERS-----RSRERERRRPRRKREDSRDRRNRRDMEREGERRRR 208

Query: 79  CR-GTKIKRRASKRDRWGVVGVGERG 5
            R G + +RR   RD    V   +RG
Sbjct: 209 RRDGERTRRRERNRDPSPSVSDDDRG 234

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>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4|
          Length = 489

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
 Frame = -1

Query: 331 RLPTESRGTRKARGPTETATGSQTESGGSKQAMNSNSRAQRDHGAPQWQHSTDQKRKRTA 152
           RL  +  G+R+ R  + + + S++ S  S+ +  S SR+    G+ +  HS  + R R+ 
Sbjct: 171 RLVEDKPGSRRRRSYSRSRSHSRSRSR-SRHSRKSRSRS----GSSKSSHSKSRSRSRSG 225

Query: 151 PTGRSKWGKRNR-RIRPRETAHVRHCRGTKIKRRASKRDR 35
              RSK   R++ R R ++       +  K + R+   D+
Sbjct: 226 SHSRSKSRSRSQSRSRSKKEKSRSPSKDNKSRSRSRSPDK 265



 Score = 28.9 bits (63), Expect = 5.3
 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
 Frame = -1

Query: 319 ESRGTRKARGPTETATGSQTESG---GSKQAMNSNSRAQRDHGAPQWQHSTDQKRKRTAP 149
           +S G  K+  P+   + S++ S      ++   S SRA+    +   + S  + R R+  
Sbjct: 282 DSAGKAKSHSPSRHDSKSRSRSQERRAEEERRRSVSRARSQEKSRSQEKSLLKSRSRSRS 341

Query: 148 TGRSKW-GKRNRRIRPRETAHVR-HCRGTKIKRRASKRD 38
             RS+   KR  R R R+ +  R   +  + ++ +SKRD
Sbjct: 342 RSRSRSKDKRKGRKRSRDESRSRSRSKSERSRKHSSKRD 380

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>SUWA_DROME (P12297) Protein suppressor of white apricot|
          Length = 963

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 11/126 (8%)
 Frame = -1

Query: 385  LLRTPTSHLPAHQHTQR*RLPTESRGTRKARGPTETATGSQTESGGSKQAMNSNSRAQRD 206
            L+ T ++   + +H +  R    SR   K    ++++  S+  S   +Q  +  SR    
Sbjct: 821  LVATTSTRSSSSRHLKTHR---RSRSRSKNVRSSDSSPSSRESSRRRRQKSSRLSREPSS 877

Query: 205  HGAPQWQHSTDQ------KRKRTAPTGRSKWGKRNRRI-----RPRETAHVRHCRGTKIK 59
            +   + QHS+ Q      KR+R+    RSK  +R+R I       R  +    CR  + +
Sbjct: 878  NPPRKSQHSSTQRKKTPKKRRRSKSRSRSKSIRRSRSISILRNNRRSRSRSPSCRNAEQR 937

Query: 58   RRASKR 41
            R+  +R
Sbjct: 938  RQQDRR 943

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>CVCB_PEA (P13919) Convicilin precursor (Fragment)|
          Length = 386

 Score = 27.7 bits (60), Expect(2) = 2.6
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 13/88 (14%)
 Frame = -1

Query: 259 ESGGSKQAMNSNSRAQRDHGAPQWQHSTDQKRKRTAPTGRSKWGKRN------------- 119
           E    KQ        + +    ++Q+  ++K ++    GR +W +               
Sbjct: 100 EDEEEKQKYRYQREKEDEEEKQKYQYQREKKEQKEVQPGRERWEREEDEEQVDEEWRGSQ 159

Query: 118 RRIRPRETAHVRHCRGTKIKRRASKRDR 35
           RR  P E A +RH      +   +KRDR
Sbjct: 160 RREDPEERARLRH------REERTKRDR 181



 Score = 20.8 bits (42), Expect(2) = 2.6
 Identities = 8/32 (25%), Positives = 15/32 (46%)
 Frame = -3

Query: 344 HAEIAVTYREPGNQESARTDRDRHRQSNRERR 249
           H E   +Y +  ++E  + +R R      E+R
Sbjct: 57  HGEWRPSYEKEEDEEEGQRERGRQEGEKEEKR 88

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>BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)|
          Length = 644

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 21/69 (30%), Positives = 28/69 (40%)
 Frame = +1

Query: 4   SLSPRLRPPPIYLSCSLAA*S*CRGSAVRVPFPLAGSAGFASPTCSCPSVRCVSASGLCC 183
           S+SP + P P     S++A      + +  P   A  A   SPT S PS    SA+    
Sbjct: 154 SVSPSIFPSPAQSFASISASPSTPTTTLAPPTTAAAGALAGSPTSSSPSSSAASAAAAAA 213

Query: 184 AATVVRRGL 210
           AA      L
Sbjct: 214 AAAAAAADL 222

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>VE2_HPV12 (P36782) Regulatory protein E2|
          Length = 494

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
 Frame = -1

Query: 370 TSHLPAHQHTQR*RLPTESRGTRKARGPTETATGSQTESGGSKQAMNSNSRAQRDHGAPQ 191
           +S  P+    +  R  ++SRG       T+T T  +     S      + R +R  G   
Sbjct: 291 SSRSPSVTQIRNRRSRSQSRGRGGRGSSTDTTTKRRRSRSSSSNTRKRSQRGERGRGERG 350

Query: 190 WQHSTDQKRKRTAPT-GRSKWGKRNRRIR 107
            +     +   T+PT  RS+ G R+ R R
Sbjct: 351 GRGKRRDRSSSTSPTPKRSRAGSRSSRQR 379

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>FBX41_HUMAN (Q8TF61) F-box only protein 41|
          Length = 874

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
 Frame = -1

Query: 328 LPTESRGTRKARGPTETATGSQTESGGSKQAMNSNSRAQRDHGAPQWQ-----HSTDQKR 164
           LP    G  +  GP    T +Q  +GGS++     S   R      WQ     HST+ + 
Sbjct: 423 LPRPEEGAPEDSGPGGLGTRAQAANGGSERTQPPRSSGLRRQAIQNWQRRPRRHSTEGEE 482

Query: 163 KRTAPTG 143
              +  G
Sbjct: 483 GDVSDVG 489

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>DDX46_RAT (Q62780) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46) (Helicase of 117.4 kDa)
          Length = 1032

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
 Frame = -1

Query: 319 ESRGTRK---ARGPTETATGSQTESGGSKQAMNSNSRAQRDHGAPQWQHSTDQKRKRTAP 149
           ESR  RK   +RG   + + S++ S   K++   + R  R     + +  +  + KR + 
Sbjct: 4   ESRHYRKRSASRG--RSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRS- 60

Query: 148 TGRSKWGKRNRRIRPRETAHVRHCRGTKIKRRASKRDR 35
             RS+  KR RR R RE    R       +RR+  RDR
Sbjct: 61  --RSRDRKRLRRSRSRERDRSRE------RRRSRSRDR 90

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>DDX46_PONPY (Q5R6D8) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46)
          Length = 1032

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
 Frame = -1

Query: 319 ESRGTRK---ARGPTETATGSQTESGGSKQAMNSNSRAQRDHGAPQWQHSTDQKRKRTAP 149
           ESR  RK   +RG   + + S++ S   K++   + R  R     + +  +  + KR + 
Sbjct: 4   ESRHYRKRSASRG--RSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRS- 60

Query: 148 TGRSKWGKRNRRIRPRETAHVRHCRGTKIKRRASKRDR 35
             RS+  KR RR R RE    R       +RR+  RDR
Sbjct: 61  --RSRDRKRLRRSRSRERDRSRE------RRRSRSRDR 90

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>DDX46_MOUSE (Q569Z5) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46)
          Length = 1032

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
 Frame = -1

Query: 319 ESRGTRK---ARGPTETATGSQTESGGSKQAMNSNSRAQRDHGAPQWQHSTDQKRKRTAP 149
           ESR  RK   +RG   + + S++ S   K++   + R  R     + +  +  + KR + 
Sbjct: 4   ESRHYRKRSASRG--RSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRS- 60

Query: 148 TGRSKWGKRNRRIRPRETAHVRHCRGTKIKRRASKRDR 35
             RS+  KR RR R RE    R       +RR+  RDR
Sbjct: 61  --RSRDRKRLRRSRSRERDRSRE------RRRSRSRDR 90

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>DDX46_HUMAN (Q7L014) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46) (PRP5 homolog)
          Length = 1032

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
 Frame = -1

Query: 319 ESRGTRK---ARGPTETATGSQTESGGSKQAMNSNSRAQRDHGAPQWQHSTDQKRKRTAP 149
           ESR  RK   +RG   + + S++ S   K++   + R  R     + +  +  + KR + 
Sbjct: 4   ESRHYRKRSASRG--RSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRS- 60

Query: 148 TGRSKWGKRNRRIRPRETAHVRHCRGTKIKRRASKRDR 35
             RS+  KR RR R RE    R       +RR+  RDR
Sbjct: 61  --RSRDRKRLRRSRSRERDRSRE------RRRSRSRDR 90

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>SNIP1_HUMAN (Q8TAD8) Smad nuclear-interacting protein 1|
          Length = 396

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -3

Query: 323 YREPGNQESAR---TDRDRHRQSNRERR 249
           +REP  QE  R   +DRDRHR  + +RR
Sbjct: 124 HREPSEQEHRRARNSDRDRHRGHSHQRR 151

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>OXDA_RHOTO (P80324) D-amino-acid oxidase (EC 1.4.3.3) (DAMOX) (DAO) (DAAO)|
          Length = 368

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 193 QWQHSTDQKRKRTAPTGRSKWGKRNRRIRPRETAHVRH 80
           +W+ ST +K     PTG + W K  RR    E   + H
Sbjct: 69  KWEESTFKKWVELVPTGHAMWLKGTRRFAQNEDGLLGH 106

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>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 17/61 (27%)
 Frame = -3

Query: 374  SYESPACTPT----HAEIAVTYREP-------------GNQESARTDRDRHRQSNRERRQ 246
            +Y+    TP      A I +T  EP             G+  S+  DR+RHR+  RE+++
Sbjct: 2878 TYKQEPSTPNSKNEEAHIQLTVHEPEQQQQLERSRLSGGSSSSSHADRERHRREKREKKR 2937

Query: 245  Q 243
            +
Sbjct: 2938 R 2938

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>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing|
           factor SRP75) (SRP001LB)
          Length = 494

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 20/72 (27%), Positives = 37/72 (51%)
 Frame = -1

Query: 331 RLPTESRGTRKARGPTETATGSQTESGGSKQAMNSNSRAQRDHGAPQWQHSTDQKRKRTA 152
           RL  +  G+R+ R  + + + S++ S  S+ +  S SR+    G+ +  HS  + R R+ 
Sbjct: 171 RLVEDKPGSRRRRSYSRSRSHSRSRSR-SRHSRKSRSRS----GSSKSSHSKSRSRSRSG 225

Query: 151 PTGRSKWGKRNR 116
              RSK   R++
Sbjct: 226 SRSRSKSRSRSQ 237

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>TIR1_YEAST (P10863) Cold shock-induced protein TIR1 precursor (Serine-rich|
           protein 1)
          Length = 254

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = -1

Query: 325 PTESRGTRKARGPTETATGSQTESGGSKQAMNSNSRAQRDHGAPQWQHSTDQKRKRTAPT 146
           PT S     +  PT +A  S +E+  S  A  S+S A+    AP    S++ K    AP+
Sbjct: 125 PTSSAAPSSSAAPTSSAASSSSEA-KSSSAAPSSSEAKSSSAAPS---SSEAKSSSAAPS 180

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>YXX7_CAEEL (Q18674) Hypothetical protein C47E12.7|
          Length = 397

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 176 RPEAETHRTDGQEQVGEAKPADPAKGNGTRTALPR 72
           R  AE  R +  + V + + A+  KGNG +TA+P+
Sbjct: 333 REAAEAARQENGDDVPDDEIAEVKKGNGKKTAVPK 367

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>RL20_UREPA (Q9PQR2) 50S ribosomal protein L20|
          Length = 120

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 16/47 (34%), Positives = 18/47 (38%)
 Frame = -1

Query: 178 TDQKRKRTAPTGRSKWGKRNRRIRPRETAHVRHCRGTKIKRRASKRD 38
           T Q+RKR        WG RN   R      +R        RR  KRD
Sbjct: 9   TRQRRKRWLEKAEGSWGTRNTSYRIARQTVIRAAEYAYRDRRNKKRD 55

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>J1L_HCMVA (P17143) Hypothetical protein J1L|
          Length = 309

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
 Frame = -3

Query: 419 EQDLSHGDRRTPPPHSYESPACTPTHA-EIAVTYREPGNQESARTDRDRHRQSNRERRQQ 243
           +++L +  R  P P    SPA TP+    ++ T R     E ++T   R  ++ + R  +
Sbjct: 17  QRNLPYAARTAPAPAQPPSPAPTPSRTPPVSATPRHRRRPERSKTPDKRSAETTQARTVE 76

Query: 242 ASNXXXXXXXXXXXXXTVAAQHRPEA 165
            +                A +HRPEA
Sbjct: 77  RTGS--------------APKHRPEA 88

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>MDN1_GIALA (Q8T5T1) Midasin (MIDAS-containing protein)|
          Length = 4835

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 21/98 (21%), Positives = 35/98 (35%)
 Frame = -3

Query: 419  EQDLSHGDRRTPPPHSYESPACTPTHAEIAVTYREPGNQESARTDRDRHRQSNRERRQQA 240
            ++DL   D        +E+P        + +   E  +++S   D DR    N   +QQA
Sbjct: 4262 DRDLPSSDENAEEHDEHEAP--------VDIDDNEASDEQSTYNDNDRDDAINISAQQQA 4313

Query: 239  SNXXXXXXXXXXXXXTVAAQHRPEAETHRTDGQEQVGE 126
            +N                    P+A    T+ Q+Q  E
Sbjct: 4314 TNDEEEMQKDTEYDQENITDSNPDANEVGTNDQKQTHE 4351

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>CISY2_BACSU (P39120) Citrate synthase 2 (EC 2.3.3.1) (Citrate synthase II)|
          Length = 372

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 205 HGAPQWQHSTDQKRKRTAPTGRSKWGKRNRRI 110
           HG P+ +H  +  ++ T  TG SKW + + RI
Sbjct: 262 HGDPRAKHLKEMSKRLTNLTGESKWYEMSIRI 293

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>FBX41_MOUSE (Q6NS60) F-box only protein 41|
          Length = 872

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
 Frame = -1

Query: 328 LPTESRGTRKARGPTETATGSQTESGGSKQAMNSNSRAQRDHGAPQWQ-----HSTDQKR 164
           LP    G  +  GP    + +Q  +GGS+++    S   R      WQ     HST+ + 
Sbjct: 421 LPRPEEGPSEDSGPGGLGSRAQATNGGSERSQAPRSSGLRRQAIQNWQRRPRRHSTEGEE 480

Query: 163 KRTAPTG 143
              +  G
Sbjct: 481 GDVSDVG 487

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>PCDGM_HUMAN (Q9Y5F6) Protocadherin gamma C5 precursor (PCDH-gamma-C5)|
          Length = 944

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 205 HGAPQWQHSTDQKRKRTAPTG 143
           H  P W+HS  Q+  R+AP G
Sbjct: 566 HPRPDWEHSAPQRLPRSAPPG 586

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>NCOR1_HUMAN (O75376) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR)|
          Length = 2440

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -3

Query: 401  GDRRTPPPHSYESPACTPTHAEIAVTYREPGNQESARTDRDRHRQSNRERRQQAS 237
            G + T PP  Y S + +P H              SA  +R+R R+  RER + A+
Sbjct: 1683 GTQITFPPRPYNSASMSPGHPTHLAA------AASAEREREREREKERERERIAA 1731

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>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)|
          Length = 1518

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -3

Query: 386 PPPHSYESPACTPTHAEIAVTYREPGNQESARTDRDRHRQSNRERRQQASN 234
           PPP S  S + T    E     RE   +     +R+R R   RER Q  S+
Sbjct: 388 PPPASPSSTSSTQRERE-----RERDRERDRERERERDRDREREREQSISS 433

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>PRM2_PIG (P19757) Protamine-2 (Protamine-P2) (Sperm histone P2)|
          Length = 92

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
 Frame = -1

Query: 301 KARGPTETAT-GSQTESGGSKQAMNSNSRAQ------RDH-GAPQWQHSTDQKRKRTAPT 146
           + R P+E+   GS  +    +Q  +   R +      R H G   ++H +  +R+R+   
Sbjct: 5   RVRSPSESPQQGSGQQRENERQDQDQELRPEDVPVYGRTHRGRYHYRHRSHTRRRRSC-- 62

Query: 145 GRSKWGKRNRRIRPRETAHVRHCRGTKIKRRASKR 41
                 +R RR   R   H R CR  + +RR  +R
Sbjct: 63  ------RRRRRRACRHRRHRRGCRRIRRRRRCRRR 91

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>NBP1_YEAST (P52919) NAP1-binding protein|
          Length = 319

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 10/66 (15%)
 Frame = -1

Query: 211 RDHGAPQWQHSTDQKRKRTA---------PTGRSKWGKRNRRIRPRETAH-VRHCRGTKI 62
           RD G  +   S D+ RKR+A         PTG+S   KR R++  R+T   +R  R    
Sbjct: 16  RDDGRKREYGSLDEVRKRSALRSRRKQMRPTGKSVL-KRPRKVTDRKTEEKIRTNRRKTP 74

Query: 61  KRRASK 44
           KRR +K
Sbjct: 75  KRRLTK 80

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>LYPD4_BOVIN (Q32LD3) Ly6/PLAUR domain-containing protein 4 precursor|
          Length = 246

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 14  PDSDHPPSISLARSPLNLSAAAVPYVCR 97
           P S +PP +S   SP  LS A+   VCR
Sbjct: 84  PASSYPPQVSYLVSPPGLSIASYSRVCR 111

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>YGS6_YEAST (P46945) Hypothetical 63.3 kDa protein in MPT5-SAE2 intergenic|
           region
          Length = 554

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 216 HRETTAHHSGSTAQTRSGNAPHR 148
           H  T  HHS S+A  +S N PHR
Sbjct: 98  HSLTEGHHSHSSANVKSLNFPHR 120

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>HSP1_DROAU (P42132) Sperm protamine P1|
          Length = 63

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 166 RKRTAPTGRSKWGKRNRR-IRPRETAHVRHCRGTKIKRRASKR 41
           R+ +    RS++ +R RR +R R   + R  RG + +RR S+R
Sbjct: 4   RRHSRSRSRSRYRRRRRRRLRNRRRRYRRSRRGRRRRRRGSRR 46

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>HSP1_AEPRU (Q9GLP9) Sperm protamine P1|
          Length = 60

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -1

Query: 193 QWQHSTDQKRKRTAPTGRSKWGKRNRRIRPRETAHVRHCRGTKIKRRASKRDRWG 29
           +++HS  + R R          +R RR R R  +  R  RG++ +RR+ +R R G
Sbjct: 2   RYRHSRSRSRSRY---------RRRRRRRSRYRSRRRRYRGSRRRRRSRRRRRRG 47

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>VE2_HPV36 (P50809) Regulatory protein E2|
          Length = 509

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
 Frame = -1

Query: 379 RTPTSHLPAHQHTQR*RLPTESRGTRKARGPTETATGSQTESGGSKQAMNSNS------R 218
           R+P++        +R R+  E+ G+R ARG      G++  SGG ++   S+S      +
Sbjct: 329 RSPSTSSSTTTTNKRSRVRAETTGSRGARG----GRGARGGSGGGRRRGRSSSSTSPAHK 384

Query: 217 AQRDHGAPQWQHSTDQKRKRTAPTGRSKWGKRNR 116
             R+H       S DQ  K          G+  R
Sbjct: 385 RSREHSVRSRGVSPDQVGKSLRSVSSKHTGRLGR 418

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>TOPRS_MOUSE (Q80Z37) Ubiquitin-protein E3 ligase Topors (EC 6.3.2.-)|
           (SUMO1-protein E3 ligase Topors) (Topoisomerase
           I-binding RING finger protein) (Topoisomerase I-binding
           arginine/serine-rich protein) (Tumor suppressor
           p53-binding protein 3) (p53-bindi
          Length = 1033

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 30/112 (26%)
 Frame = -1

Query: 304 RKARGPTETATGSQTESG---------GSKQAMNSNSRAQRDHGAPQWQHSTDQKRKRT- 155
           RK      + + SQ+ SG         G K+  N  SR++     P+ +   D+KR RT 
Sbjct: 592 RKGGRSRSSDSRSQSRSGHDPRNHRKHGKKRLRNKRSRSRESSSRPRARK--DKKRSRTR 649

Query: 154 ---------------APTGRSK-----WGKRNRRIRPRETAHVRHCRGTKIK 59
                            T RS+      GKR  R R R+  ++R+  G+K K
Sbjct: 650 DSSWSRRSQTLSLSSGSTSRSRSRSSDHGKRRSRSRNRDRYYLRNNYGSKYK 701

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>PRP5_YARLI (Q6CCZ1) Pre-mRNA-processing ATP-dependent RNA helicase PRP5 (EC|
           3.6.1.-)
          Length = 974

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 20/73 (27%), Positives = 28/73 (38%)
 Frame = -1

Query: 253 GGSKQAMNSNSRAQRDHGAPQWQHSTDQKRKRTAPTGRSKWGKRNRRIRPRETAHVRHCR 74
           GG +      SR +RD          D+ R R    G  +   R+RR   R     R   
Sbjct: 19  GGGRYGYRDRSRDERDRFRDVRDRDRDRDRDRERDRGGYRQDPRDRRY-SRSRERERRGS 77

Query: 73  GTKIKRRASKRDR 35
           G++ + R   RDR
Sbjct: 78  GSRDRSRDRSRDR 90

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>SON_HUMAN (P18583) SON protein (SON3) (Negative regulatory element-binding|
            protein) (NRE-binding protein) (DBP-5) (Bax antagonist
            selected in saccharomyces 1) (BASS1)
          Length = 2426

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
 Frame = -1

Query: 382  LRTPTSHLPAHQHTQR*RLPTESRGTRKARGPTETATGSQTESGGSKQAMNSNSRAQR-- 209
            ++   +H  + ++  R +   E +     R  ++ +  S+ +S   K+   S SRA++  
Sbjct: 1794 VKVKDTHEKSKKNKNRDKGEKEKKRDSSLRSRSKRSKSSEHKS--RKRTSESRSRARKRS 1851

Query: 208  ----DHGAPQWQHSTDQKRKRTAPTGRSKWGKR--NRRIRPRETAHVRHCRGTKIKRRAS 47
                 H +     S  ++R+R++ +     G+R  ++  R R   H    R  K KR +S
Sbjct: 1852 SKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSS 1911

Query: 46   KRDR 35
            + +R
Sbjct: 1912 RDNR 1915

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>U2AFM_HUMAN (Q15696) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa|
           subunit related-protein 2 (U2(RNU2) small nuclear RNA
           auxillary factor 1-like 2) (NY-REN-20 antigen)
          Length = 482

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 20/83 (24%), Positives = 34/83 (40%)
 Frame = -1

Query: 355 AHQHTQR*RLPTESRGTRKARGPTETATGSQTESGGSKQAMNSNSRAQRDHGAPQWQHST 176
           +H+ T + R     R   ++RG     +  ++   GS+    S SR  R         S 
Sbjct: 407 SHKRTSKSR----ERHNSRSRGRNRDRSRDRSRGRGSRSRSRSRSRRSR--------RSR 454

Query: 175 DQKRKRTAPTGRSKWGKRNRRIR 107
            Q   R+   GR + G R+R ++
Sbjct: 455 SQSSSRSRSRGRRRSGNRDRTVQ 477

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>SON_MOUSE (Q9QX47) SON protein|
          Length = 2404

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
 Frame = -1

Query: 382  LRTPTSHLPAHQHTQR*RLPTESRGTRKARGPTETATGSQTESGGSKQAMNSNSRAQR-- 209
            ++   +H  + ++  R +   E +     R  ++ +  S+ +S   K+   S SRA++  
Sbjct: 1779 VKVKDTHEKSKKNKNRDKGEKEKKRDSSLRSRSKRSKSSEHKS--RKRTSESRSRARKRS 1836

Query: 208  ----DHGAPQWQHSTDQKRKRTAPTGRSKWGKR--NRRIRPRETAHVRHCRGTKIKRRAS 47
                 H +     S  ++R+R++ +     G+R  ++  R R   H    R  K KR +S
Sbjct: 1837 SKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSS 1896

Query: 46   KRDR 35
            + +R
Sbjct: 1897 RDNR 1900

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>PININ_MOUSE (O35691) Pinin|
          Length = 725

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
 Frame = -1

Query: 316 SRGTRKARGPTETATGSQTESGGSKQAMNSNSRAQ-RDHGAPQWQHSTDQKRKRTAPTGR 140
           S  +R +   + + +GS +    S  + +S SR++ R  G     H+ D+K +R+    R
Sbjct: 608 SSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRGRG-----HNRDRKHRRSMDRKR 662

Query: 139 SKWGKRNRRIRPRETAHVRHCRGTKIKRRASKRDR 35
                  R  +  +    R  +G+K K     R R
Sbjct: 663 RDTSGLERSHKSSKGGSSRDRKGSKDKSSRPDRKR 697

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>NIPBL_HUMAN (Q6KC79) Nipped-B-like protein (Delangin) (SCC2 homolog)|
          Length = 2804

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 6/122 (4%)
 Frame = -3

Query: 416 QDLSHGDRRTPPPHSYESPACTPTHAEIAVTYREPGN--QESARTDRDRHRQSNRERRQQ 243
           ++L   + RT      ES    P   E  ++  +P +  Q + R++  + R    +++ +
Sbjct: 649 EELKQNESRTTECKQNESTIVEPKQNENRLSDTKPNDNKQNNGRSETTKSRPETPKQKGE 708

Query: 242 ASNXXXXXXXXXXXXXTVAAQHRPEAETHRTDGQ----EQVGEAKPADPAKGNGTRTALP 75
           +                  +   PE    + DG+    +Q GE++P  P + N  R   P
Sbjct: 709 SRPETPKQK----------SDGHPETPKQKGDGRPETPKQKGESRPETPKQKNEGRPETP 758

Query: 74  RH 69
           +H
Sbjct: 759 KH 760

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>NCOR1_XENLA (Q8QG78) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (xN-CoR)|
          Length = 2498

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = -3

Query: 383  PPHSYESPACTPTH-AEIAVTYREPGNQESARTDRDRHRQSNRERRQQASNXXXXXXXXX 207
            PP  Y   + +P H A +A +      +E  R +R+R R+  +E+R++ S+         
Sbjct: 1744 PPRPYNPASMSPGHPAHLANSVSAERERERER-ERERDREREKEQRERESDRERERDRLA 1802

Query: 206  XXXXTVAAQHRP 171
                  AA   P
Sbjct: 1803 HAAAAAAAASAP 1814

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>FA61A_PONPY (Q5R4R4) Protein FAM61A|
          Length = 463

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 176 RPEAETHRTDGQEQVGEAKPADPAKGNG 93
           RPE E  R D + QV    P+ P +G G
Sbjct: 246 RPENEQLRNDNKRQVAPGAPSAPRRGRG 273

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>FA61A_HUMAN (Q8ND56) Protein FAM61A (Putative alpha synuclein-binding protein)|
           (AlphaSNBP)
          Length = 463

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 176 RPEAETHRTDGQEQVGEAKPADPAKGNG 93
           RPE E  R D + QV    P+ P +G G
Sbjct: 246 RPENEQLRNDNKRQVAPGAPSAPRRGRG 273


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,798,874
Number of Sequences: 219361
Number of extensions: 1030160
Number of successful extensions: 4569
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 4101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4498
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result