>PPK_MYCLE (O33127) Polyphosphate kinase (EC 2.7.4.1) (Polyphosphoric acid|
           kinase) (ATP-polyphosphate phosphotransferase)
          Length = 739

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = -3

Query: 212 REHRWVLRTVRVLCAAAMSQARLLLREREQGRIESEPEGAVMMRVMRGERDREVDVSVR 36
           RE  W+    RVL  AA +   LL R +      S  +   M+RV   +R  E+D+SVR
Sbjct: 52  RESSWLDFNARVLALAADNSLPLLERAKFLAIFASNLDEFYMVRVAGLKRRDEMDLSVR 110

>FUT4_PANTR (Q659K9) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside|
           3-L-fucosyltransferase) (Fucosyltransferase 4) (FUCT-IV)
           (Fuc-TIV)
          Length = 405

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 14/60 (23%)
 Frame = -2

Query: 408 GRRRWVAGRGTP--------AGTR-----TRPAWVPL-PAPWPCDWPSRLRRRHCWCRPW 271
           GRRRW  GRG P        AG       T   W  L P PW    PSR      W  P+
Sbjct: 14  GRRRWRRGRGLPWTVCVLAAAGLTCTALITYACWGQLPPLPWASPTPSRPVGVLLWWEPF 73

>XLNR_ASPNG (O42804) Transcriptional activator xlnR|
          Length = 875

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 354 PAWVPLPAPWPCDWPS 307
           P W+PLP+P P ++PS
Sbjct: 268 PGWLPLPSPSPANFPS 283

>SYH_SILPO (Q5LVN3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 495

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -3

Query: 149 RLLLREREQGRIESEPEGAVMMRVMRGERDREVD 48
           RLL   RE+GRI +   G V++ VM  +RDR  D
Sbjct: 364 RLLAALREKGRIRTAERGPVVVTVM--DRDRMAD 395

>PELB_COLGL (O59939) Pectate lyase B precursor (EC 4.2.2.2)|
          Length = 331

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -2

Query: 354 PAWVPLPAPWPCDWPSRLRRR 292
           P+W+PLPAP P   PS  RRR
Sbjct: 11  PSWLPLPAP-PPPLPSVTRRR 30

>Y2251_LISIN (Q929M4) Hypothetical UPF0324 membrane protein lin2251|
          Length = 335

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 396 WVAGRGTPAGTRTRPAWVPLPAPW 325
           +V  +   AGT+ R +W  LP PW
Sbjct: 230 FVVAKMVNAGTKNRFSWAELPVPW 253

>Y2179_LISMF (Q71XL9) Hypothetical UPF0324 membrane protein LMOf2365_2179|
          Length = 335

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 396 WVAGRGTPAGTRTRPAWVPLPAPW 325
           +V  +   AGT+ R +W  LP PW
Sbjct: 230 FVVAKMVNAGTKNRFSWAELPVPW 253

>Y2147_LISMO (Q8Y5B8) Hypothetical UPF0324 membrane protein lmo2147|
          Length = 335

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 396 WVAGRGTPAGTRTRPAWVPLPAPW 325
           +V  +   AGT+ R +W  LP PW
Sbjct: 230 FVVAKMVNAGTKNRFSWAELPVPW 253

>SHAN3_RAT (Q9JLU4) SH3 and multiple ankyrin repeat domains 3 (Shank3)|
            (Proline-rich synapse associated protein 2) (ProSAP2)
            (SPANK-2)
          Length = 1815

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 378  TPAGTRTRPAWVPLPAPWPCDWPSRLRRR 292
            +PA +   PAW+P+PA    + P+R  R+
Sbjct: 1235 SPAFSPRSPAWIPVPARREAEKPTREERK 1263

>PO5F1_BOVIN (O97552) POU domain, class 5, transcription factor 1|
           (Octamer-binding transcription factor 3) (Oct-3) (Oct-4)
          Length = 360

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
 Frame = -2

Query: 402 RRWVAGRGTPAGTRTRPAWVPLPAPW---PCDWPSRLRRRHCWCRP 274
           R W++ +G P G+   P  VP    W   PC  P  L     +C P
Sbjct: 33  RTWMSFQGPPGGSGIGPGVVPGAEVWGLPPCPPPYDLCGGMAYCAP 78

>CFAH_BOVIN (Q28085) Complement factor H (H factor 1) (Fragments)|
          Length = 685

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -2

Query: 384 RGTPAGTRTRPAWVPLP-APW-PCDWP 310
           RGT A T TR  WVP+P   W PC +P
Sbjct: 228 RGTDA-TCTRDGWVPVPRCAWKPCSYP 253

>RGMC_HUMAN (Q6ZVN8) Hemojuvelin precursor (Hemochromatosis type 2 protein)|
           (RGM domain family member C)
          Length = 426

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -2

Query: 375 PAGTRTRPAWVPLPAPWPCDWPSRLRRRH 289
           P G     A   LPAP PCD+  R  R H
Sbjct: 130 PRGPALPGAGSGLPAPDPCDYEGRFSRLH 158

>LATS2_HUMAN (Q9NRM7) Serine/threonine-protein kinase LATS2 (EC 2.7.11.1) (Large|
           tumor suppressor homolog 2) (Serine/threonine-protein
           kinase kpm) (Kinase phosphorylated during mitosis
           protein) (Warts-like kinase)
          Length = 1088

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 360 TRPAWVPLPAPWPCDWPS 307
           + PAWVP PAP P   P+
Sbjct: 461 SHPAWVPAPAPAPAPAPA 478


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.124    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,382,214
Number of Sequences: 219361
Number of extensions: 618367
Number of successful extensions: 2345
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2343
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)