ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl53e10 |
|---|---|
| Clone Library Name | barley_pub |
>UBIB_PASMU (Q9CKD4) Probable ubiquinone biosynthesis protein ubiB| Length = 527 Score = 33.9 bits (76), Expect = 0.22 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 4/78 (5%) Frame = +2 Query: 248 ISRRLKVFSLALFVYLDYKAVQKR-VQWVSAVKKHAIWAKTHERNARRVLNLMIELEGL- 421 IS + L +D Q R + + +K W + ++ L L + L+ L Sbjct: 6 ISHLYNIIKTFLLYGIDEALPQHRYTRAIRCWRKTLFWLRNQHKDKTFGLRLRLALQELG 65 Query: 422 --WVKMGQYLSTRADVLP 469 W+K+GQ LSTR D+ P Sbjct: 66 PVWIKLGQMLSTRRDLFP 83
>CSP_PLACB (P08672) Circumsporozoite protein precursor (CS)| Length = 378 Score = 33.1 bits (74), Expect = 0.37 Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 2/82 (2%) Frame = -2 Query: 259 APGYEGSPSHRRSAGQEERGGMIPA--HAVGSPARGS*QGSKLFFSARASRGGESPKAPP 86 AP +G+P+ R+ GQ GG A G PA G Q + + GG P Sbjct: 183 APAGDGAPAGNRAGGQPAAGGNQAGGNRAGGQPAAGGNQAGGNRAGGQPAAGGNQAGGQP 242 Query: 85 APGXXXXXXXXXXXXXXEQEGG 20 A G Q GG Sbjct: 243 AAGGNQAGAQAGGNQAGAQAGG 264
>NGN2_HUMAN (Q9H2A3) Neurogenin 2| Length = 272 Score = 32.7 bits (73), Expect = 0.49 Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Frame = -2 Query: 349 VLLNSANPLHSLLNSLIVQVDEQRQ*KNFEAPGYEGSPSHRR--SAGQEERGGMIPAHAV 176 VLL SA+P + L L DE+ + E PG G +R AGQ RGG+ Sbjct: 18 VLLGSASPALAALTPLSSSADEEEE----EEPGASGGARRQRGAEAGQGARGGVAAGAEG 73 Query: 175 GSPAR 161 PAR Sbjct: 74 CRPAR 78
>UBIB_PHOPR (Q6LVW8) Probable ubiquinone biosynthesis protein ubiB| Length = 545 Score = 32.7 bits (73), Expect = 0.49 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Frame = +2 Query: 296 DYKAVQKRVQWVSAVKKHAIWAKTHERN---ARRVLNLMIELEGLWVKMGQYLSTRADVL 466 D+ R + +K W K + R+ + EL +W+K GQ +STR D+ Sbjct: 24 DFLPEDPRTKMPKMARKSLFWIKNQHPDKSLGERLRLALQELGPVWIKFGQMMSTRRDLF 83 Query: 467 P 469 P Sbjct: 84 P 84
>ISPDF_LEIXX (Q6ADI0) IspD/ispF bifunctional enzyme [Includes:| 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol synthase) (MEP cytidylyltransferase) (MCT); 2-C-methyl-D-erythritol 2,4-cyclod Length = 386 Score = 32.3 bits (72), Expect = 0.64 Identities = 22/63 (34%), Positives = 26/63 (41%) Frame = +3 Query: 75 IPGAGGAFGDSPPRLARAEKKSLLPC*EPRAGLPTACAGIIPPRSS*PADLRWDGEPSYP 254 IPG AF + P R ++ L PR G T P A LRW+GEP Sbjct: 205 IPGDARAFKITTPWDLRRAEELLAGLAAPRIGFGTDTHAFDPSAELWLAGLRWEGEPGLA 264 Query: 255 GAS 263 G S Sbjct: 265 GHS 267
>CLIC6_RAT (Q811Q2) Chloride intracellular channel 6| Length = 612 Score = 31.6 bits (70), Expect = 1.1 Identities = 21/70 (30%), Positives = 31/70 (44%) Frame = -2 Query: 298 VQVDEQRQ*KNFEAPGYEGSPSHRRSAGQEERGGMIPAHAVGSPARGS*QGSKLFFSARA 119 VQ + R E PG G+P +A + G +IP + G R QG+ A+ Sbjct: 75 VQAQDPRPGPGTETPGTSGAPGEAEAAECDSEGALIP-QSGGGAKRQQVQGTSSGLDAQ- 132 Query: 118 SRGGESPKAP 89 GE+P+ P Sbjct: 133 ---GEAPEVP 139
>Y1261_METTH (O27329) Hypothetical UPF0104 protein MTH1261| Length = 338 Score = 31.6 bits (70), Expect = 1.1 Identities = 18/49 (36%), Positives = 27/49 (55%) Frame = +2 Query: 269 FSLALFVYLDYKAVQKRVQWVSAVKKHAIWAKTHERNARRVLNLMIELE 415 F LAL+V +D A ++ W+ V K + K HER RRV + + E + Sbjct: 165 FFLALYVSVDRDAGERITGWILGVVKR-FYRKNHERLERRVRSALHEFQ 212
>SYK_MYCGA (Q7NC34) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 496 Score = 31.2 bits (69), Expect = 1.4 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = +2 Query: 293 LDYKAVQKRVQWVSAVKKHAIWAKTHERNARRVLNLMIE 409 +D+ V+K Q + KKH + K HE+ ++NL E Sbjct: 331 IDFTQVKKIDQALDLAKKHKVHVKEHEKTIGHIINLFFE 369
>Y095_SYNY3 (Q55884) Hypothetical protein sll0095| Length = 567 Score = 31.2 bits (69), Expect = 1.4 Identities = 14/37 (37%), Positives = 25/37 (67%) Frame = +2 Query: 359 AKTHERNARRVLNLMIELEGLWVKMGQYLSTRADVLP 469 A+ R A+ ++ ++ L ++K+GQ LSTRAD++P Sbjct: 51 AQRRYRRAQWLVQQLLYLGPTFIKIGQSLSTRADIIP 87
>JIP3_DROME (Q9GQF1) JNK-interacting protein 3 (Protein sunday driver)| Length = 1227 Score = 31.2 bits (69), Expect = 1.4 Identities = 22/61 (36%), Positives = 28/61 (45%) Frame = -2 Query: 259 APGYEGSPSHRRSAGQEERGGMIPAHAVGSPARGS*QGSKLFFSARASRGGESPKAPPAP 80 A G G P R + GG PAH+ GSP+RGS G + A G+ P P + Sbjct: 524 ADGLGGGPMFRHT------GGGSPAHSHGSPSRGSGGGD----NRLALTSGQPPVHPASA 573 Query: 79 G 77 G Sbjct: 574 G 574
>UBIB_ERWCT (Q6DAQ5) Probable ubiquinone biosynthesis protein ubiB| Length = 546 Score = 31.2 bits (69), Expect = 1.4 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%) Frame = +2 Query: 356 WAKTHERN---ARRVLNLMIELEGLWVKMGQYLSTRADVLP 469 W RN R+ + EL +W+K GQ +STR D+ P Sbjct: 43 WLPNRHRNMPLGERLRLALQELGPVWIKFGQMMSTRRDLFP 83
>GLGA_FRATT (Q5NHN2) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial| glycogen] synthase) Length = 489 Score = 31.2 bits (69), Expect = 1.4 Identities = 14/41 (34%), Positives = 17/41 (41%) Frame = +1 Query: 49 WLFSRARAGSPAPGGPSAIHPHDWRGQRRKAYCPARSLEQG 171 W+ +R G A P +H HDW AY A L G Sbjct: 119 WVAARISEGLDAKWKPEIVHSHDWHAGLVPAYIKASELASG 159
>Y889_SYNY3 (P73577) Hypothetical protein slr0889| Length = 408 Score = 31.2 bits (69), Expect = 1.4 Identities = 12/24 (50%), Positives = 19/24 (79%) Frame = +2 Query: 398 LMIELEGLWVKMGQYLSTRADVLP 469 +++EL ++K+GQ LSTR D+LP Sbjct: 49 ILVELGPFYIKLGQLLSTRPDLLP 72
>UBIB_VIBVY (Q7MQ31) Probable ubiquinone biosynthesis protein ubiB| Length = 544 Score = 30.8 bits (68), Expect = 1.9 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%) Frame = +2 Query: 338 VKKHAIWAKTHERN---ARRVLNLMIELEGLWVKMGQYLSTRADVLP 469 ++K W K R+ + EL +W+K GQ LSTR D+ P Sbjct: 37 MRKSLFWLKNQHPEKPLGDRLRLALQELGPVWIKFGQMLSTRRDLFP 83
>UBIB_VIBVU (Q8DDQ1) Probable ubiquinone biosynthesis protein ubiB| Length = 544 Score = 30.8 bits (68), Expect = 1.9 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%) Frame = +2 Query: 338 VKKHAIWAKTHERN---ARRVLNLMIELEGLWVKMGQYLSTRADVLP 469 ++K W K R+ + EL +W+K GQ LSTR D+ P Sbjct: 37 MRKSLFWLKNQHPEKPLGDRLRLALQELGPVWIKFGQMLSTRRDLFP 83
>UBIB_VIBPA (Q87TH2) Probable ubiquinone biosynthesis protein ubiB| Length = 544 Score = 30.8 bits (68), Expect = 1.9 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%) Frame = +2 Query: 338 VKKHAIWAKTHERN---ARRVLNLMIELEGLWVKMGQYLSTRADVLP 469 ++K W K R+ + EL +W+K GQ +STR D+ P Sbjct: 37 MRKSLFWIKNQHPEKPLGERLRLALQELGPVWIKFGQMMSTRRDLFP 83
>UBIB_PROST (O07443) Probable ubiquinone biosynthesis protein ubiB| (Aminoglycoside acetyltransferase regulator) Length = 544 Score = 30.8 bits (68), Expect = 1.9 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%) Frame = +2 Query: 356 WAKTHERN---ARRVLNLMIELEGLWVKMGQYLSTRADVLP 469 W K + R+ + EL +W+K GQ LSTR D+ P Sbjct: 43 WIKNQHKGKELGERLRLALQELGPVWIKFGQMLSTRRDLFP 83
>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 30.8 bits (68), Expect = 1.9 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 10/70 (14%) Frame = -2 Query: 259 APGYEGSPSHRRSAG----QEERGGMIPAHAVGSPARGS*QGSKLFF------SARASRG 110 APG +G P R +AG + +RG P A GSP + +G A +G Sbjct: 712 APGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGARGLTGPIGPPGPAGAPGDKG 771 Query: 109 GESPKAPPAP 80 P PP P Sbjct: 772 EAGPSGPPGP 781
>CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)| Length = 779 Score = 30.4 bits (67), Expect = 2.4 Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 1/61 (1%) Frame = -2 Query: 259 APGYEGSPSHRRSAGQE-ERGGMIPAHAVGSPARGS*QGSKLFFSARASRGGESPKAPPA 83 APG EGSP S G + +RG PA A G P G RG P P Sbjct: 579 APGAEGSPGRDGSPGAKGDRGETGPAGAPGPPGAPGAPGPVGPAGKSGDRGETGPAGPIG 638 Query: 82 P 80 P Sbjct: 639 P 639
>BRD1_HUMAN (O95696) Bromodomain-containing protein 1 (BR140-like protein)| Length = 1058 Score = 30.4 bits (67), Expect = 2.4 Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 1/88 (1%) Frame = +3 Query: 105 SPPRLARAEKKSLLPC*EPRAGLPTACAGIIPPRSS*PADLRWDGEPSYPGASKFFHWRC 284 S ++ + KK+ EP A LPT CA IPP+ L K F R Sbjct: 422 STSKVRKKAKKAKKALAEPCAVLPTVCAPYIPPQR-----LNRIANQVAIQRKKQFVERA 476 Query: 285 SSTWTI-RLFRRECSGLALLRSTLYGQR 365 S W + RL R L L+S+L QR Sbjct: 477 HSYWLLKRLSRNGAPLLRRLQSSLQSQR 504
>CELR3_MOUSE (Q91ZI0) Cadherin EGF LAG seven-pass G-type receptor 3 precursor| Length = 3301 Score = 30.4 bits (67), Expect = 2.4 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = -1 Query: 461 RPLWWTNTGPSSPTNLLALSS 399 RPLWW GPS+P LL L S Sbjct: 4 RPLWWGLPGPSTPVLLLLLLS 24
>UBIB_PHOLL (Q7MZ83) Probable ubiquinone biosynthesis protein ubiB| Length = 545 Score = 30.4 bits (67), Expect = 2.4 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 5/77 (6%) Frame = +2 Query: 254 RRLKVFSLALFVY-LDYKAVQKRVQWVSAVKKHAI-WAKTHERN---ARRVLNLMIELEG 418 RRL + Y LD + R+ W ++ + W ++ R+ + EL Sbjct: 7 RRLYLIIRVFLSYGLDELIPRIRLTWPLRFGRYLLFWIPNRHKDKSLGERLRLALQELGP 66 Query: 419 LWVKMGQYLSTRADVLP 469 +W+K GQ LSTR D+ P Sbjct: 67 VWIKFGQMLSTRRDLFP 83
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 30.0 bits (66), Expect = 3.2 Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 1/61 (1%) Frame = -2 Query: 259 APGYEGSPSHRRSAGQE-ERGGMIPAHAVGSPARGS*QGSKLFFSARASRGGESPKAPPA 83 APG EGSP S G + +RG PA G+P G RG P P Sbjct: 1017 APGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAG 1076 Query: 82 P 80 P Sbjct: 1077 P 1077 Score = 29.3 bits (64), Expect = 5.4 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 4/64 (6%) Frame = -2 Query: 259 APGYEGSPSHRRSAG----QEERGGMIPAHAVGSPARGS*QGSKLFFSARASRGGESPKA 92 APG +G P R +AG + +RG P A GSP + RG P Sbjct: 723 APGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKD------------GVRGLTGPIG 770 Query: 91 PPAP 80 PP P Sbjct: 771 PPGP 774
>UBIB_RALSO (Q8Y275) Probable ubiquinone biosynthesis protein ubiB| Length = 525 Score = 30.0 bits (66), Expect = 3.2 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%) Frame = +2 Query: 242 TLISRRLKVFSLALFVYLDYKAVQKRVQWVSAVKKHAIWAKTHERNARRV----LNLMIE 409 T + R K+ + L+ LD A+ + S + +W T R R L L +E Sbjct: 2 TRLFRLCKIIFVILYHGLDQLALSG---FKSRRIRALVWVLTLGRRQTRPRGERLRLALE 58 Query: 410 LEG-LWVKMGQYLSTRADVLP 469 G ++VK GQ LSTR D+LP Sbjct: 59 QLGPIFVKFGQVLSTRRDLLP 79
>CELR3_RAT (O88278) Cadherin EGF LAG seven-pass G-type receptor 3 precursor| (Multiple epidermal growth factor-like domains 2) Length = 3313 Score = 30.0 bits (66), Expect = 3.2 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = -1 Query: 461 RPLWWTNTGPSSPTNLLALSS 399 RPLWW GPS+P LL L S Sbjct: 4 RPLWWGLPGPSTPLLLLLLFS 24
>PYGO_DROME (Q9V9W8) Protein pygopus (Protein gammy legs)| Length = 815 Score = 30.0 bits (66), Expect = 3.2 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 3/60 (5%) Frame = +1 Query: 76 SPAPGGPSAIHPHDWRGQRRKA---YCPARSLEQGCPRRVPESSLLAPPDQLTSDGMGNP 246 SP GGP+ +P +G P SL G P P S L PP + G GNP Sbjct: 262 SPMGGGPNGPNPRAMQGSPMGGPGQNSPMNSLPMGSPMGNPIGSPLGPP---SGPGPGNP 318
>UBIB_SHIFL (P0A6A2) Probable ubiquinone biosynthesis protein ubiB| Length = 546 Score = 30.0 bits (66), Expect = 3.2 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +2 Query: 407 ELEGLWVKMGQYLSTRADVLP 469 EL +W+K GQ LSTR D+ P Sbjct: 63 ELGPVWIKFGQMLSTRRDLFP 83
>UBIB_SALTY (P0A197) Probable ubiquinone biosynthesis protein ubiB| Length = 546 Score = 30.0 bits (66), Expect = 3.2 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +2 Query: 407 ELEGLWVKMGQYLSTRADVLP 469 EL +W+K GQ LSTR D+ P Sbjct: 63 ELGPVWIKFGQMLSTRRDLFP 83
>UBIB_SALTI (P0A198) Probable ubiquinone biosynthesis protein ubiB| Length = 546 Score = 30.0 bits (66), Expect = 3.2 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +2 Query: 407 ELEGLWVKMGQYLSTRADVLP 469 EL +W+K GQ LSTR D+ P Sbjct: 63 ELGPVWIKFGQMLSTRRDLFP 83
>UBIB_ECOLI (P0A6A0) Probable ubiquinone biosynthesis protein ubiB| Length = 546 Score = 30.0 bits (66), Expect = 3.2 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +2 Query: 407 ELEGLWVKMGQYLSTRADVLP 469 EL +W+K GQ LSTR D+ P Sbjct: 63 ELGPVWIKFGQMLSTRRDLFP 83
>UBIB_ECOL6 (Q8FBI8) Probable ubiquinone biosynthesis protein ubiB| Length = 546 Score = 30.0 bits (66), Expect = 3.2 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +2 Query: 407 ELEGLWVKMGQYLSTRADVLP 469 EL +W+K GQ LSTR D+ P Sbjct: 63 ELGPVWIKFGQMLSTRRDLFP 83
>UBIB_ECO57 (P0A6A1) Probable ubiquinone biosynthesis protein ubiB| Length = 546 Score = 30.0 bits (66), Expect = 3.2 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +2 Query: 407 ELEGLWVKMGQYLSTRADVLP 469 EL +W+K GQ LSTR D+ P Sbjct: 63 ELGPVWIKFGQMLSTRRDLFP 83
>FOXH1_BRARE (Q9I9E1) Forkhead box protein H1 (Forkhead activin signal| transducer 1) (Fast-1) (Schmalspur protein) Length = 472 Score = 30.0 bits (66), Expect = 3.2 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = +3 Query: 93 AFGDSPPRLARAEKKSLLPC*EPRAGLPTACAGIIPPRSS*PADLRWDGEPSYP 254 A+ DS P ++ K+ P E LPT+ A PP + P +R++G P P Sbjct: 335 AYSDSCPPPNKSSKRGNTPPWE----LPTSYAKYTPPNAVAPPSMRFNGNPFMP 384
>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 30.0 bits (66), Expect = 3.2 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Frame = -2 Query: 259 APGYEGSPSHRRSAGQE-ERGGMIPAHAVGSPARGS*QGSKLFFSARASRGGESPKAPPA 83 APG EG+P +AG + +RG PA G+P G RG P P Sbjct: 1006 APGAEGAPGRDGAAGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNGDRGETGPAGPAG 1065 Query: 82 P 80 P Sbjct: 1066 P 1066
>BTBD2_HUMAN (Q9BX70) BTB/POZ domain-containing protein 2| Length = 525 Score = 29.6 bits (65), Expect = 4.1 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = -2 Query: 187 AHAVGSPARGS*QGSKLFFSARASRGGESPKAPPAPG 77 A+A +PA G+ + +A A+ G +P APP PG Sbjct: 30 ANAAATPAPGNAAAAAAAAAAAAAAPGPTPPAPPGPG 66
>PKAA_STRCO (P54739) Serine/threonine protein kinase pkaA (EC 2.7.11.1)| Length = 543 Score = 29.6 bits (65), Expect = 4.1 Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 16/82 (19%) Frame = +1 Query: 73 GSPAPGGPSAIHPHDWRGQRRKAYCPARSLE-------QGCPRRVPESSLLAPPDQ---- 219 G+P GGP PH W+ Q R A + Q RR P+ + PP Q Sbjct: 362 GAPGQGGPE--DPHPWQNQLRAARDRNEQTQVQYLDPNQDPLRRRPQRQVSRPPQQPRQA 419 Query: 220 -----LTSDGMGNPHIQAPQSF 270 G G P Q PQ + Sbjct: 420 PQGPPPQQPGYGYPQQQQPQRY 441
>PDE3B_HUMAN (Q13370) cGMP-inhibited 3',5'-cyclic phosphodiesterase B (EC| 3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase B) (CGI-PDE B) (CGIPDE1) (CGIP1) Length = 1112 Score = 29.6 bits (65), Expect = 4.1 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +3 Query: 27 SCSLFFLLAILSRTRRIPGAGGAFG 101 +C+ FFL L+RT+R PG G + G Sbjct: 126 ACAFFFLTCFLTRTKRGPGPGRSCG 150
>TTBK1_HUMAN (Q5TCY1) Tau-tubulin kinase 1 (EC 2.7.11.1) (Brain-derived tau| kinase) Length = 1321 Score = 29.6 bits (65), Expect = 4.1 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Frame = +3 Query: 63 RTRRIPGAGGAFGD---SPPRLARAEKKSLLPC*EPRAGLPTACAGIIPPRSS*PADLRW 233 R+ R+P + A + SP + + ++S P + R G+P PPR PA + Sbjct: 1231 RSPRLPASTSAARNASASPRSQSLSRRESPSPSHQARPGVP-------PPRGVPPARAQP 1283 Query: 234 DGEPSYPGASK 266 DG PS PG SK Sbjct: 1284 DGTPS-PGGSK 1293
>ADA15_MOUSE (O88839) ADAM 15 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 15) (Metalloproteinase-like, disintegrin-like, and cysteine-rich protein 15) (MDC-15) (Metalloprotease RGD disintegrin protein) (Metargidin) (AD56) Length = 864 Score = 29.6 bits (65), Expect = 4.1 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Frame = +3 Query: 171 LPTACAGIIPPRSS*PADLRW-DGEPSYPGASKFFHWRCSSTWTIRLFRRECSGL 332 LP C G S P+D+R DGEP G + H RC+S + R+C L Sbjct: 490 LPEFCPG---DSSQCPSDIRLGDGEPCASGEAVCMHGRCAS------YARQCQSL 535
>PLIN_HUMAN (O60240) Perilipin (PERI) (Lipid droplet-associated protein)| Length = 522 Score = 29.6 bits (65), Expect = 4.1 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = -2 Query: 181 AVGSPARGS*QGSKLFFSARASRGGESPKAPPAPG 77 A G+P+ G +L R+ R +SP APP PG Sbjct: 435 ASGAPSAGPEPAPRLAQPRRSLRSAQSPGAPPGPG 469
>UBIB_VIBCH (Q9KVQ4) Probable ubiquinone biosynthesis protein ubiB| Length = 544 Score = 29.3 bits (64), Expect = 5.4 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +2 Query: 407 ELEGLWVKMGQYLSTRADVLP 469 EL +W+K GQ +STR D+ P Sbjct: 63 ELGPVWIKFGQMMSTRRDLFP 83
>MYOD_DICDI (P34109) Myosin ID heavy chain| Length = 1109 Score = 29.3 bits (64), Expect = 5.4 Identities = 22/58 (37%), Positives = 27/58 (46%) Frame = -2 Query: 253 GYEGSPSHRRSAGQEERGGMIPAHAVGSPARGS*QGSKLFFSARASRGGESPKAPPAP 80 G +PS R +A RGGM P GS A S +G A RGG +P+ AP Sbjct: 1052 GPSTAPSGRGAAPPSSRGGMAPRG--GSVAPPSSRGGIAPRGGIAPRGGMAPRGGMAP 1107
>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor| Length = 1460 Score = 29.3 bits (64), Expect = 5.4 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 4/64 (6%) Frame = -2 Query: 259 APGYEGSPSHRRSAG----QEERGGMIPAHAVGSPARGS*QGSKLFFSARASRGGESPKA 92 APG +G P R +AG + +RG P A GSP + RG P Sbjct: 719 APGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKD------------GVRGLTGPIG 766 Query: 91 PPAP 80 PP P Sbjct: 767 PPGP 770
>UBIB_YERPS (Q66FS8) Probable ubiquinone biosynthesis protein ubiB| Length = 543 Score = 29.3 bits (64), Expect = 5.4 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +2 Query: 407 ELEGLWVKMGQYLSTRADVLP 469 EL +W+K GQ +STR D+ P Sbjct: 63 ELGPVWIKFGQMMSTRRDLFP 83
>UBIB_YERPE (Q8ZAM1) Probable ubiquinone biosynthesis protein ubiB| Length = 543 Score = 29.3 bits (64), Expect = 5.4 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +2 Query: 407 ELEGLWVKMGQYLSTRADVLP 469 EL +W+K GQ +STR D+ P Sbjct: 63 ELGPVWIKFGQMMSTRRDLFP 83
>CLIC6_MOUSE (Q8BHB9) Chloride intracellular channel 6| Length = 596 Score = 29.3 bits (64), Expect = 5.4 Identities = 26/96 (27%), Positives = 36/96 (37%) Frame = -2 Query: 295 QVDEQRQ*KNFEAPGYEGSPSHRRSAGQEERGGMIPAHAVGSPARGS*QGSKLFFSARAS 116 Q + R E PG G+P +A ++ G IP A +P+ QG S S Sbjct: 76 QAQDPRTGPEAETPGASGAPGEAEAAERDPEGA-IPQGAEEAPSAQQVQGMS---SGLDS 131 Query: 115 RGGESPKAPPAPGXXXXXXXXXXXXXXEQEGGLGQE 8 +G +AP PG +E GQE Sbjct: 132 QG----EAPEVPGDSRREPEDPTASEAGEEAESGQE 163
>UBIB_PSESM (Q87UZ0) Probable ubiquinone biosynthesis protein ubiB| Length = 539 Score = 29.3 bits (64), Expect = 5.4 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%) Frame = +2 Query: 326 WVSAVKKHAIWAKTHERNAR-----RVLNLMIELEGLWVKMGQYLSTRADVLPE 472 W+ AV+ W R + R + +L +++K GQ LSTR D+LPE Sbjct: 33 WMLAVRFVLPWRWLPRRKSELSRGVRFRLALQDLGPIFIKFGQLLSTRRDLLPE 86
>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 29.3 bits (64), Expect = 5.4 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 4/64 (6%) Frame = -2 Query: 259 APGYEGSPSHRRSAG----QEERGGMIPAHAVGSPARGS*QGSKLFFSARASRGGESPKA 92 APG +G P R +AG + +RG P A GSP + RG P Sbjct: 712 APGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKD------------GVRGLTGPIG 759 Query: 91 PPAP 80 PP P Sbjct: 760 PPGP 763
>TAF10_HUMAN (Q12962) Transcription initiation factor TFIID subunit 10| (Transcription initiation factor TFIID 30 kDa subunit) (TAF(II)30) (TAFII-30) (TAFII30) (STAF28) Length = 218 Score = 28.9 bits (63), Expect = 7.1 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = +3 Query: 78 PGAGGAFGDSPPRLARAEKKSLLPC*EPRAGLPTACAGIIPPRSS 212 PGAG A G + P ARA + + E R P + G PP + Sbjct: 52 PGAGAAAGGTGPLAARAGEPA-----ERRGAAPVSAGGAAPPEGA 91
>ADA15_RAT (Q9QYV0) ADAM 15 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 15) (Metalloproteinase-like, disintegrin-like, and cysteine-rich protein 15) (MDC-15) (Metalloprotease RGD disintegrin protein) (Metargidin) (CRII-7) Length = 816 Score = 28.9 bits (63), Expect = 7.1 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Frame = +3 Query: 171 LPTACAGIIPPRSS*PADLRW-DGEPSYPGASKFFHWRCSSTWTIRLFRRECSGL 332 LP C G S P D+R DGEP G + H RC+S + R+C L Sbjct: 491 LPEFCLG---DSSQCPPDIRLGDGEPCASGEAVCMHGRCAS------YTRQCQSL 536
>LMA1L_HUMAN (Q9HAT1) ERGIC-53-like protein precursor (ERGIC53-like protein)| (Lectin, mannose-binding 1-like) (LMAN1-like protein) Length = 526 Score = 28.9 bits (63), Expect = 7.1 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = +2 Query: 392 LNLMIELEGLWVKMGQYLSTRADVLPE 472 L L +LEGLW ++G L TR DV P+ Sbjct: 270 LRLARQLEGLWARLG--LGTREDVTPK 294
>SEM6C_HUMAN (Q9H3T2) Semaphorin-6C precursor (Semaphorin Y) (Sema Y)| Length = 930 Score = 28.9 bits (63), Expect = 7.1 Identities = 31/84 (36%), Positives = 34/84 (40%), Gaps = 19/84 (22%) Frame = +1 Query: 52 LFSRARAGSPAP---GGPSAIHPHDWRG--------QRRKAYCPARS--------LEQGC 174 L SRA PAP GGPS PH+ + R A PAR L G Sbjct: 790 LTSRALPPEPAPALLGGPSP-RPHECASPLRLDVPPEGRCASAPARPALSAPAPRLGVGG 848 Query: 175 PRRVPESSLLAPPDQLTSDGMGNP 246 RR+P S APP LT G P Sbjct: 849 GRRLPFSGHRAPPALLTRVPSGGP 872
>41_DROME (Q9V8R9) Protein 4.1 homolog (Protein coracle)| Length = 1698 Score = 28.9 bits (63), Expect = 7.1 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%) Frame = +3 Query: 54 ILSRTRRIPGAGGAFGDSPPRLARAEKKSLLPC*EPRAGLPTACAGIIPPRSS*PADL-- 227 +LS T R G A + L+ ++K+S P P+ G + G P S AD Sbjct: 657 LLSPTTRAKLQGSAVDAAAVPLSDSQKRSYSPTKGPQ-GYSSGAPGSYKPISDPTADFLE 715 Query: 228 --RWDGEPSYPGASK 266 R++ EP Y G SK Sbjct: 716 SQRYNKEPGYVGPSK 730
>CO4A2_HUMAN (P08572) Collagen alpha-2(IV) chain precursor| Length = 1712 Score = 28.9 bits (63), Expect = 7.1 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 6/55 (10%) Frame = +1 Query: 1 RKTPAPNRLPAL----SFFFWLF-SRARAGSPA-PGGPSAIHPHDWRGQRRKAYC 147 R P P LP F F L ++ RAG P PG P A P W+G + C Sbjct: 431 RGPPGPPGLPGPPGPDGFLFGLKGAKGRAGFPGLPGSPGARGPKGWKGDAGECRC 485
>UBIB_PSEAE (Q9HUB8) Probable ubiquinone biosynthesis protein ubiB| Length = 533 Score = 28.9 bits (63), Expect = 7.1 Identities = 16/33 (48%), Positives = 22/33 (66%) Frame = +2 Query: 374 RNARRVLNLMIELEGLWVKMGQYLSTRADVLPE 472 R AR L L +L +++K GQ LSTR D+LP+ Sbjct: 56 RGARLRLALQ-DLGPIFIKFGQILSTRRDLLPD 87
>COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor| Length = 1806 Score = 28.5 bits (62), Expect = 9.2 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 7/65 (10%) Frame = -2 Query: 253 GYEGSPSHRRSAGQEERGGMI-------PAHAVGSPARGS*QGSKLFFSARASRGGESPK 95 G +G+P + G R G+ PA GSP +G + S+GG+ Sbjct: 1087 GEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGGKGEN 1146 Query: 94 APPAP 80 PP P Sbjct: 1147 GPPGP 1151
>SYI_ACIAD (Q6FG02) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 945 Score = 28.5 bits (62), Expect = 9.2 Identities = 14/46 (30%), Positives = 26/46 (56%) Frame = -2 Query: 400 QVENTTSIALVRLCPYSVLLNSANPLHSLLNSLIVQVDEQRQ*KNF 263 +V++ T I + P+++ N A LH+ ++ +VQV R +NF Sbjct: 238 EVQDPTDIVIWTTTPWTLPANQAVALHAEIDYQLVQVQSDRGTQNF 283
>ADCY5_RABIT (P40144) Adenylate cyclase type 5 (EC 4.6.1.1) (Adenylate cyclase| type V) (ATP pyrophosphate-lyase 5) (Adenylyl cyclase 5) Length = 1264 Score = 28.5 bits (62), Expect = 9.2 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = -2 Query: 259 APGYEGSPSHRRSAGQEERGGMIPAHAVGSPARGS 155 AP G P HR + G+ + HA G ARGS Sbjct: 19 APASRGGPEHRSAWGEADSRANGYPHAPGGSARGS 53
>TTDN1_MOUSE (Q9D011) TTD nonphotosensitive 1 protein homolog| Length = 178 Score = 28.5 bits (62), Expect = 9.2 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Frame = +1 Query: 55 FSRARAGSPAPGG-PSAIHPHDWRGQRRKAYCPA--RSLEQGCPR 180 FS AR GSP+PGG P + Q + Y P ++ QG PR Sbjct: 72 FSGARFGSPSPGGYPGSYSRSPAGSQHQFGYSPGQQQTYPQGSPR 116
>Y1770_SYNY3 (P73627) Hypothetical protein sll1770| Length = 585 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/76 (19%), Positives = 36/76 (47%) Frame = +2 Query: 242 TLISRRLKVFSLALFVYLDYKAVQKRVQWVSAVKKHAIWAKTHERNARRVLNLMIELEGL 421 ++ RR+ ++ L + + K+ + + + + R A+ + ++ L Sbjct: 40 SITRRRIDIWGFVLTLLYQFWLNGKKWSYAGGYTEEKLQQR-RRRQAKWIRENLLSLGPT 98 Query: 422 WVKMGQYLSTRADVLP 469 ++K+GQ STR+D+ P Sbjct: 99 FIKVGQLFSTRSDLFP 114
>PCGF2_HUMAN (P35227) Polycomb group RING finger protein 2 (DNA-binding protein| Mel-18) (RING finger protein 110) (Zinc finger protein 144) Length = 344 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = +1 Query: 4 KTPAPNRLPALSFFFWLFSRARAGSPAPGGPSAIHP 111 K P+P LPA S + GSP+ GP A HP Sbjct: 262 KAPSPATLPATSSSLPSPATPSHGSPSSHGPPATHP 297
>SYI_THEFY (Q47QV9) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 1060 Score = 28.5 bits (62), Expect = 9.2 Identities = 18/39 (46%), Positives = 19/39 (48%) Frame = -1 Query: 212 GGARRDDSGTRRGQPCSRLLAGQ*AFLLCPRQSWG*IAE 96 G A R DSG R QP +R L G F P Q IAE Sbjct: 829 GRAARVDSGQRVRQPLARALVGAPGFAELPEQLRAQIAE 867
>RASL1_MOUSE (Q9Z268) RasGAP-activating-like protein 1| Length = 799 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/44 (34%), Positives = 19/44 (43%) Frame = +1 Query: 49 WLFSRARAGSPAPGGPSAIHPHDWRGQRRKAYCPARSLEQGCPR 180 WL + +A +P PG A HP +R R A GC R Sbjct: 663 WLSALRKASAPNPGKLVACHPGAFRSGRWTCCLQAERSAAGCSR 706
>PCGF2_MOUSE (P23798) Polycomb group RING finger protein 2 (DNA-binding protein| Mel-18) (RING finger protein 110) (Zinc finger protein 144) (Zfp-144) Length = 342 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = +1 Query: 4 KTPAPNRLPALSFFFWLFSRARAGSPAPGGPSAIHP 111 K P+P LPA S + GSP+ GP A HP Sbjct: 262 KAPSPATLPATSSSLPSPATPSHGSPSSHGPPATHP 297 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,632,852 Number of Sequences: 219361 Number of extensions: 1709436 Number of successful extensions: 5626 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 5227 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5624 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
