ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl53e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK122000.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 7e-49
2dbj|AK120169.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 7e-49
3dbj|AK065611.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 7e-49
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 161 3e-36
5dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic D... 161 3e-36
6ref|XM_364735.1| Magnaporthe grisea 70-15 hypothetical protein (... 44 0.41
7emb|Z84469.1|HS390O13 Human DNA sequence from clone RP3-390O13 o... 42 1.6
8emb|CR933736.12| Mouse DNA sequence from clone DN-183N8 on chrom... 42 1.6
9emb|AL592547.9| Mouse DNA sequence from clone RP23-122P1 on chro... 42 1.6
10gb|AC025018.6| Homo sapiens chromosome 18, clone RP11-320C19, co... 42 1.6
11gb|AC154268.2| Mus musculus BAC clone RP24-235B13 from chromosom... 42 1.6
12emb|AL928974.12| Mouse DNA sequence from clone RP23-56C2 on chro... 42 1.6
13emb|AL929254.12| Mouse DNA sequence from clone RP23-456I1 on chr... 42 1.6
14emb|AL691401.1|SPAPB15E9 S.pombe chromosome I cosmid pB15E9 42 1.6
15gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 40 6.4
16emb|CR788254.10| Zebrafish DNA sequence from clone DKEY-82K12 in... 40 6.4
17gb|AC138299.14| Mus musculus chromosome 18, clone RP23-296E4, co... 40 6.4
18gb|AC125069.4| Mus musculus BAC clone RP23-436E5 from chromosome... 40 6.4
19gb|AC097064.2| Homo sapiens chromosome 1 clone RP11-524L19, comp... 40 6.4
20emb|AL356332.1|ATT31P16 Arabidopsis thaliana DNA chromosome 5, B... 40 6.4
21emb|AL807234.6| Mouse DNA sequence from clone RP23-293E12 on chr... 40 6.4
22emb|AL928721.5| Mouse DNA sequence from clone RP23-402N20 on chr... 40 6.4
23emb|AL929024.9| Mouse DNA sequence from clone RP23-480H10 on chr... 40 6.4

>dbj|AK122000.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033110I09, full
           insert sequence
          Length = 882

 Score =  202 bits (102), Expect = 7e-49
 Identities = 207/242 (85%)
 Strand = Plus / Plus

                                                                       
Query: 230 atgggatggggaaccctcatatccaggcgcctcaaagttttttcattggcgttgttcgtc 289
           ||||||||||||| |  | || |||||||||||||||| |||||  |||| |||||  | 
Sbjct: 278 atgggatggggaaacaccttaaccaggcgcctcaaagtcttttccatggccttgtttata 337

                                                                       
Query: 290 tacttggactataaggctgttcagaagagagtgcagtgggttagcgctgttaagaagcac 349
           ||||| ||||||||||| ||||||||||||||  | |||||| |||||| ||| ||| | 
Sbjct: 338 tacttcgactataaggcagttcagaagagagttaaatgggttggcgctggtaaaaaggat 397

                                                                       
Query: 350 gctatatgggcaaagacgcacgagcgcaatgctcgtcgtgttctcaacctgatgatagag 409
           ||||||||| |||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 398 gctatatggacaaaaacacacgagcgaaatgctcgtcgtgttctcaacctgatgatagag 457

                                                                       
Query: 410 ctagaaggtttgtgggtgaagatgggccagtatttgtccaccagagcggacgtgcttcct 469
            |||||||||| |||||||| ||||| || ||||| ||||| ||||| || |||||||||
Sbjct: 458 ttagaaggtttatgggtgaaaatgggacaatatttatccacaagagcagatgtgcttcct 517

             
Query: 470 ga 471
           ||
Sbjct: 518 ga 519



to top

>dbj|AK120169.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031N20, full
           insert sequence
          Length = 1974

 Score =  202 bits (102), Expect = 7e-49
 Identities = 207/242 (85%)
 Strand = Plus / Plus

                                                                       
Query: 230 atgggatggggaaccctcatatccaggcgcctcaaagttttttcattggcgttgttcgtc 289
           ||||||||||||| |  | || |||||||||||||||| |||||  |||| |||||  | 
Sbjct: 277 atgggatggggaaacaccttaaccaggcgcctcaaagtcttttccatggccttgtttata 336

                                                                       
Query: 290 tacttggactataaggctgttcagaagagagtgcagtgggttagcgctgttaagaagcac 349
           ||||| ||||||||||| ||||||||||||||  | |||||| |||||| ||| ||| | 
Sbjct: 337 tacttcgactataaggcagttcagaagagagttaaatgggttggcgctggtaaaaaggat 396

                                                                       
Query: 350 gctatatgggcaaagacgcacgagcgcaatgctcgtcgtgttctcaacctgatgatagag 409
           ||||||||| |||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 397 gctatatggacaaaaacacacgagcgaaatgctcgtcgtgttctcaacctgatgatagag 456

                                                                       
Query: 410 ctagaaggtttgtgggtgaagatgggccagtatttgtccaccagagcggacgtgcttcct 469
            |||||||||| |||||||| ||||| || ||||| ||||| ||||| || |||||||||
Sbjct: 457 ttagaaggtttatgggtgaaaatgggacaatatttatccacaagagcagatgtgcttcct 516

             
Query: 470 ga 471
           ||
Sbjct: 517 ga 518



to top

>dbj|AK065611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029I23, full
           insert sequence
          Length = 2957

 Score =  202 bits (102), Expect = 7e-49
 Identities = 207/242 (85%)
 Strand = Plus / Plus

                                                                       
Query: 230 atgggatggggaaccctcatatccaggcgcctcaaagttttttcattggcgttgttcgtc 289
           ||||||||||||| |  | || |||||||||||||||| |||||  |||| |||||  | 
Sbjct: 277 atgggatggggaaacaccttaaccaggcgcctcaaagtcttttccatggccttgtttata 336

                                                                       
Query: 290 tacttggactataaggctgttcagaagagagtgcagtgggttagcgctgttaagaagcac 349
           ||||| ||||||||||| ||||||||||||||  | |||||| |||||| ||| ||| | 
Sbjct: 337 tacttcgactataaggcagttcagaagagagttaaatgggttggcgctggtaaaaaggat 396

                                                                       
Query: 350 gctatatgggcaaagacgcacgagcgcaatgctcgtcgtgttctcaacctgatgatagag 409
           ||||||||| |||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 397 gctatatggacaaaaacacacgagcgaaatgctcgtcgtgttctcaacctgatgatagag 456

                                                                       
Query: 410 ctagaaggtttgtgggtgaagatgggccagtatttgtccaccagagcggacgtgcttcct 469
            |||||||||| |||||||| ||||| || ||||| ||||| ||||| || |||||||||
Sbjct: 457 ttagaaggtttatgggtgaaaatgggacaatatttatccacaagagcagatgtgcttcct 516

             
Query: 470 ga 471
           ||
Sbjct: 517 ga 518



to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  161 bits (81), Expect = 3e-36
 Identities = 147/169 (86%)
 Strand = Plus / Minus

                                                                            
Query: 303      aggctgttcagaagagagtgcagtgggttagcgctgttaagaagcacgctatatgggcaa 362
                |||| ||||||||||||||  | |||||| |||||| ||| ||| | ||||||||| |||
Sbjct: 29006932 aggcagttcagaagagagttaaatgggttggcgctggtaaaaaggatgctatatggacaa 29006873

                                                                            
Query: 363      agacgcacgagcgcaatgctcgtcgtgttctcaacctgatgatagagctagaaggtttgt 422
                | || |||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 29006872 aaacacacgagcgaaatgctcgtcgtgttctcaacctgatgatagagttagaaggtttat 29006813

                                                                 
Query: 423      gggtgaagatgggccagtatttgtccaccagagcggacgtgcttcctga 471
                ||||||| ||||| || ||||| ||||| ||||| || |||||||||||
Sbjct: 29006812 gggtgaaaatgggacaatatttatccacaagagcagatgtgcttcctga 29006764



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                            
Query: 230      atgggatggggaaccctcatatccaggcgcctcaaagttttttcattggcgttgttcgtc 289
                ||||||||||||| |  | || |||||||||||||||| |||||  |||| |||||  | 
Sbjct: 29007103 atgggatggggaaacaccttaaccaggcgcctcaaagtcttttccatggccttgtttata 29007044

                                
Query: 290      tacttggactataagg 305
                ||||| ||||||||||
Sbjct: 29007043 tacttcgactataagg 29007028



to top

>dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0596H10
          Length = 166570

 Score =  161 bits (81), Expect = 3e-36
 Identities = 147/169 (86%)
 Strand = Plus / Minus

                                                                         
Query: 303   aggctgttcagaagagagtgcagtgggttagcgctgttaagaagcacgctatatgggcaa 362
             |||| ||||||||||||||  | |||||| |||||| ||| ||| | ||||||||| |||
Sbjct: 21919 aggcagttcagaagagagttaaatgggttggcgctggtaaaaaggatgctatatggacaa 21860

                                                                         
Query: 363   agacgcacgagcgcaatgctcgtcgtgttctcaacctgatgatagagctagaaggtttgt 422
             | || |||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 21859 aaacacacgagcgaaatgctcgtcgtgttctcaacctgatgatagagttagaaggtttat 21800

                                                              
Query: 423   gggtgaagatgggccagtatttgtccaccagagcggacgtgcttcctga 471
             ||||||| ||||| || ||||| ||||| ||||| || |||||||||||
Sbjct: 21799 gggtgaaaatgggacaatatttatccacaagagcagatgtgcttcctga 21751



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                         
Query: 230   atgggatggggaaccctcatatccaggcgcctcaaagttttttcattggcgttgttcgtc 289
             ||||||||||||| |  | || |||||||||||||||| |||||  |||| |||||  | 
Sbjct: 22090 atgggatggggaaacaccttaaccaggcgcctcaaagtcttttccatggccttgtttata 22031

                             
Query: 290   tacttggactataagg 305
             ||||| ||||||||||
Sbjct: 22030 tacttcgactataagg 22015



to top

>ref|XM_364735.1| Magnaporthe grisea 70-15 hypothetical protein (MG09580.4) partial
           mRNA
          Length = 1335

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 119 ggcgcgggcagagaagaaaagc 140
           ||||||||||||||||||||||
Sbjct: 63  ggcgcgggcagagaagaaaagc 84



to top

>emb|Z84469.1|HS390O13 Human DNA sequence from clone RP3-390O13 on chromosome Xp11 Contains
             the 5' end of a novel gene, the 3' end of the PRKWNK3 for
             lysine deficient protein kinase 3, a ribosomal protein L7A
             (RPL7A) pseudogene and two CpG islands, complete sequence
          Length = 144676

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 125   ggcagagaagaaaagcttact 145
             |||||||||||||||||||||
Sbjct: 92118 ggcagagaagaaaagcttact 92138



to top

>emb|CR933736.12| Mouse DNA sequence from clone DN-183N8 on chromosome 11, complete
              sequence
          Length = 194230

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 26     ttcctgctctctcttttttct 46
              |||||||||||||||||||||
Sbjct: 154219 ttcctgctctctcttttttct 154199



to top

>emb|AL592547.9| Mouse DNA sequence from clone RP23-122P1 on chromosome 11 Contains
            two novel genes, the Chrne gene for cholinergic receptor
            nicotinic epsilon polypeptide, genes 4930544D05Rik,
            C730027E14Rik and LOC327956, the gene for
            mitogen-activated protein kinase kinase kinase kinase 6
            (Map4k6-pending), the Pld2 gene for phospholipase D2, the
            Psmb6 gene for proteasome (prosome, macropain) subunit
            beta type 6, a ribosomal protein L34 pseudogene, the 3'
            end of gene 2010003F10Rik and three CpG islands, complete
            sequence
          Length = 123943

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 26   ttcctgctctctcttttttct 46
            |||||||||||||||||||||
Sbjct: 3377 ttcctgctctctcttttttct 3397



to top

>gb|AC025018.6| Homo sapiens chromosome 18, clone RP11-320C19, complete sequence
          Length = 159942

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 32     ctctctcttttttcttctggctatt 56
              ||||||||||||| |||||||||||
Sbjct: 103884 ctctctcttttttattctggctatt 103860



to top

>gb|AC154268.2| Mus musculus BAC clone RP24-235B13 from chromosome 13, complete
             sequence
          Length = 157088

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 38    cttttttcttctggctattct 58
             |||||||||||||||||||||
Sbjct: 82276 cttttttcttctggctattct 82256



to top

>emb|AL928974.12| Mouse DNA sequence from clone RP23-56C2 on chromosome 2, complete
              sequence
          Length = 195442

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 422    tgggtgaagatgggccagtatttgt 446
              |||| ||||||||||||||||||||
Sbjct: 171149 tgggggaagatgggccagtatttgt 171173



to top

>emb|AL929254.12| Mouse DNA sequence from clone RP23-456I1 on chromosome 2, complete
             sequence
          Length = 222104

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 422   tgggtgaagatgggccagtatttgt 446
             |||| ||||||||||||||||||||
Sbjct: 20321 tgggggaagatgggccagtatttgt 20345



to top

>emb|AL691401.1|SPAPB15E9 S.pombe chromosome I cosmid pB15E9
          Length = 12573

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 32   ctctctcttttttcttctggctattctct 60
            |||||||||||||||| ||||||| ||||
Sbjct: 6000 ctctctcttttttcttgtggctatcctct 6028



to top

>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     attctctcgcgcacgcgccg 73
              ||||||||||||||||||||
Sbjct: 407474 attctctcgcgcacgcgccg 407455



to top

>emb|CR788254.10| Zebrafish DNA sequence from clone DKEY-82K12 in linkage group 2,
             complete sequence
          Length = 227206

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    ctgctctctcttttttcttc 48
             ||||||||||||||||||||
Sbjct: 63084 ctgctctctcttttttcttc 63103



to top

>gb|AC138299.14| Mus musculus chromosome 18, clone RP23-296E4, complete sequence
          Length = 257153

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     cttcctgctctctctttttt 44
              ||||||||||||||||||||
Sbjct: 132413 cttcctgctctctctttttt 132432



to top

>gb|AC125069.4| Mus musculus BAC clone RP23-436E5 from chromosome 2, complete sequence
          Length = 199446

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    ctgctctctcttttttcttc 48
             ||||||||||||||||||||
Sbjct: 87173 ctgctctctcttttttcttc 87154



to top

>gb|AC097064.2| Homo sapiens chromosome 1 clone RP11-524L19, complete sequence
          Length = 183425

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 25    cttcctgctctctcttttttcttc 48
             |||||| |||||||||||||||||
Sbjct: 44650 cttccttctctctcttttttcttc 44673



to top

>emb|AL356332.1|ATT31P16 Arabidopsis thaliana DNA chromosome 5, BAC clone T31P16 (ESSA project)
          Length = 80088

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 33    tctctcttttttcttctggctatt 56
             ||||||||||||||| ||||||||
Sbjct: 20874 tctctcttttttcttatggctatt 20897



to top

>emb|AL807234.6| Mouse DNA sequence from clone RP23-293E12 on chromosome 4, complete
              sequence
          Length = 226546

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     ctgctctctcttttttcttc 48
              ||||||||||||||||||||
Sbjct: 166166 ctgctctctcttttttcttc 166147



to top

>emb|AL928721.5| Mouse DNA sequence from clone RP23-402N20 on chromosome 2, complete
            sequence
          Length = 79405

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 29   ctgctctctcttttttcttc 48
            ||||||||||||||||||||
Sbjct: 8007 ctgctctctcttttttcttc 7988



to top

>emb|AL929024.9| Mouse DNA sequence from clone RP23-480H10 on chromosome 2, complete
             sequence
          Length = 159617

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 140   cttactgccctgctaggagc 159
             ||||||||||||||||||||
Sbjct: 72606 cttactgccctgctaggagc 72587


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,722,608
Number of Sequences: 3902068
Number of extensions: 4722608
Number of successful extensions: 77093
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77011
Number of HSP's gapped (non-prelim): 82
length of query: 473
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 451
effective length of database: 17,147,199,772
effective search space: 7733387097172
effective search space used: 7733387097172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top