>PER1_MOUSE (O35973) Period circadian protein 1 (Circadian pacemaker protein|
           Rigui) (mPER) (M-Rigui)
          Length = 1291

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +3

Query: 108 HGPALPGRRPHCLPVLSR-RHH 170
           HGP  PGRR HC     R RHH
Sbjct: 821 HGPIPPGRRHHCRSKAKRSRHH 842

>PER1_HUMAN (O15534) Period circadian protein 1 (Circadian pacemaker protein|
           Rigui) (hPER)
          Length = 1290

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +3

Query: 108 HGPALPGRRPHCLPVLSR-RHH 170
           HGPA P RR HC     R RHH
Sbjct: 824 HGPAPPSRRHHCRSKAKRSRHH 845

>DNBI_HCMVA (P17147) Major DNA-binding protein (MDBP)|
          Length = 1235

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 174 PSDGVWIGRGGNEGGGL-VMRGHGQRNLRASNPKARR 67
           PSDG+  GRGG  GG    M G G R L AS  +  R
Sbjct: 563 PSDGLGGGRGGGGGGDSGGMMGRGGRMLGASVDRTYR 599

>MEFV_HUMAN (O15553) Pyrin (Marenostrin)|
          Length = 781

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -3

Query: 144 GNEGGGLVMRGHGQRNLRASNPKARRQL-RXXXXXXXXAEREGIREQG 4
           GNEG G    G G  +LR S P+A R L R           EG+  QG
Sbjct: 126 GNEGNGPRPYGGGAASLRCSQPEAGRGLSRKPLSKRREKASEGLDAQG 173


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,746,542
Number of Sequences: 219361
Number of extensions: 305325
Number of successful extensions: 1040
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 80,573,946
effective HSP length: 40
effective length of database: 71,799,506
effective search space used: 1723188144
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)