ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl53e04 |
|---|---|
| Clone Library Name | barley_pub |
>MQO1_STAAW (P65423) Probable malate:quinone oxidoreductase 1 (EC 1.1.99.16)| (Malate dehydrogenase [acceptor] 1) (MQO 1) Length = 492 Score = 28.9 bits (63), Expect = 5.7 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Frame = -2 Query: 194 GLLTSRSSQQGWTRGRAMDEGESAIDLPPLLCSTLVSASLGGKGSRSSWPFL---PSFLH 24 GL ++Q+ R A G++A+ PP+ L + + GK S PF P FL Sbjct: 269 GLFLRCTNQEVIDRHHAKVYGKAAVGAPPMSVPHLDTRFVDGKRSLLFGPFAGFSPKFLK 328 Query: 23 TGAVLPL 3 TG+ + L Sbjct: 329 TGSHMDL 335
>MQO1_STAAS (Q6G6V5) Probable malate:quinone oxidoreductase 1 (EC 1.1.99.16)| (Malate dehydrogenase [acceptor] 1) (MQO 1) Length = 492 Score = 28.9 bits (63), Expect = 5.7 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Frame = -2 Query: 194 GLLTSRSSQQGWTRGRAMDEGESAIDLPPLLCSTLVSASLGGKGSRSSWPFL---PSFLH 24 GL ++Q+ R A G++A+ PP+ L + + GK S PF P FL Sbjct: 269 GLFLRCTNQEVIDRHHAKVYGKAAVGAPPMSVPHLDTRFVDGKRSLLFGPFAGFSPKFLK 328 Query: 23 TGAVLPL 3 TG+ + L Sbjct: 329 TGSHMDL 335
>MQO1_STAAR (Q6GE66) Probable malate:quinone oxidoreductase 1 (EC 1.1.99.16)| (Malate dehydrogenase [acceptor] 1) (MQO 1) Length = 492 Score = 28.9 bits (63), Expect = 5.7 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Frame = -2 Query: 194 GLLTSRSSQQGWTRGRAMDEGESAIDLPPLLCSTLVSASLGGKGSRSSWPFL---PSFLH 24 GL ++Q+ R A G++A+ PP+ L + + GK S PF P FL Sbjct: 269 GLFLRCTNQEVIDRHHAKVYGKAAVGAPPMSVPHLDTRFVDGKRSLLFGPFAGFSPKFLK 328 Query: 23 TGAVLPL 3 TG+ + L Sbjct: 329 TGSHMDL 335
>MQO1_STAAN (P65422) Probable malate:quinone oxidoreductase 1 (EC 1.1.99.16)| (Malate dehydrogenase [acceptor] 1) (MQO 1) Length = 492 Score = 28.9 bits (63), Expect = 5.7 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Frame = -2 Query: 194 GLLTSRSSQQGWTRGRAMDEGESAIDLPPLLCSTLVSASLGGKGSRSSWPFL---PSFLH 24 GL ++Q+ R A G++A+ PP+ L + + GK S PF P FL Sbjct: 269 GLFLRCTNQEVIDRHHAKVYGKAAVGAPPMSVPHLDTRFVDGKRSLLFGPFAGFSPKFLK 328 Query: 23 TGAVLPL 3 TG+ + L Sbjct: 329 TGSHMDL 335
>MQO1_STAAM (P65421) Probable malate:quinone oxidoreductase 1 (EC 1.1.99.16)| (Malate dehydrogenase [acceptor] 1) (MQO 1) Length = 492 Score = 28.9 bits (63), Expect = 5.7 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Frame = -2 Query: 194 GLLTSRSSQQGWTRGRAMDEGESAIDLPPLLCSTLVSASLGGKGSRSSWPFL---PSFLH 24 GL ++Q+ R A G++A+ PP+ L + + GK S PF P FL Sbjct: 269 GLFLRCTNQEVIDRHHAKVYGKAAVGAPPMSVPHLDTRFVDGKRSLLFGPFAGFSPKFLK 328 Query: 23 TGAVLPL 3 TG+ + L Sbjct: 329 TGSHMDL 335
>MQO1_STAAC (Q5HDJ0) Probable malate:quinone oxidoreductase 1 (EC 1.1.99.16)| (Malate dehydrogenase [acceptor] 1) (MQO 1) Length = 492 Score = 28.9 bits (63), Expect = 5.7 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Frame = -2 Query: 194 GLLTSRSSQQGWTRGRAMDEGESAIDLPPLLCSTLVSASLGGKGSRSSWPFL---PSFLH 24 GL ++Q+ R A G++A+ PP+ L + + GK S PF P FL Sbjct: 269 GLFLRCTNQEVIDRHHAKVYGKAAVGAPPMSVPHLDTRFVDGKRSLLFGPFAGFSPKFLK 328 Query: 23 TGAVLPL 3 TG+ + L Sbjct: 329 TGSHMDL 335
>PMP6_CHLPN (Q9Z899) Probable outer membrane protein pmp6 precursor| (Polymorphic membrane protein 6) Length = 1276 Score = 28.9 bits (63), Expect = 5.7 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 2/80 (2%) Frame = -2 Query: 293 IKVTNTFAAAATNKRGRHTDESS--LQKRQREKEGGLLTSRSSQQGWTRGRAMDEGESAI 120 I VTNT AT TD +S LQK EK+G +++ S T A+ + ++ Sbjct: 141 ICVTNTEGGTAT-----FTDNASVTLQKNTSEKDGAAVSAYSIDLAKTTTAALLDQNTST 195 Query: 119 DLPPLLCSTLVSASLGGKGS 60 LCST + G G+ Sbjct: 196 KNGGALCSTANTTVQGNSGT 215
>EBP2_MOUSE (Q9D903) Probable rRNA-processing protein EBP2| Length = 306 Score = 28.5 bits (62), Expect = 7.4 Identities = 22/71 (30%), Positives = 30/71 (42%) Frame = -2 Query: 263 ATNKRGRHTDESSLQKRQREKEGGLLTSRSSQQGWTRGRAMDEGESAIDLPPLLCSTLVS 84 A K G+ LQKRQREK + + Q+G++ EG+ S Sbjct: 172 ALRKYGKKVQTEVLQKRQREKAHMMNAIKKYQKGFSDKLDFLEGDQK--------PVERS 223 Query: 83 ASLGGKGSRSS 51 A GGKG + S Sbjct: 224 AKAGGKGQQMS 234
>TFE2_RAT (P21677) Transcription factor E2-alpha (Immunoglobulin| enhancer-binding factor E12/E47) (Transcription factor 3) (TCF-3) (Transcription regulator Pan) Length = 649 Score = 28.5 bits (62), Expect = 7.4 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 4/61 (6%) Frame = -2 Query: 230 SSLQKRQREKEGGLLTSRSSQQGWTRGRAMDEG----ESAIDLPPLLCSTLVSASLGGKG 63 S L+ R + G S + + RA EG +S LPP ST + A LGGKG Sbjct: 49 SGLEDRPSSESWG--NSEQNSSSFDPSRAYSEGAHFSDSHSSLPP---STFLGAGLGGKG 103 Query: 62 S 60 S Sbjct: 104 S 104
>TRPF_LIPST (Q01128) N-(5'-phosphoribosyl)anthranilate isomerase (EC 5.3.1.24)| (PRAI) Length = 232 Score = 28.1 bits (61), Expect = 9.7 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = -2 Query: 134 GESAIDLPPLLCSTLVSASLGGKGSRSSWPFLP 36 GE + P L TL+ GG+G + SW LP Sbjct: 144 GEDDLMAPGLHAVTLLDGGAGGEGQKISWEGLP 176
>DNJB8_HUMAN (Q8NHS0) DnaJ homolog subfamily B member 8| Length = 232 Score = 28.1 bits (61), Expect = 9.7 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Frame = -3 Query: 328 SSTT*GGSMHFXXXXXXXXXXXLQTNGGDTLMNHLSRNGRER-KREVYLQVEVVSRDGRE 152 SST+ GGS NG + NG+ER + E Q++ V+ +G+E Sbjct: 165 SSTSFGGSSSGSSGFKSVMSSTEMINGHKVTTKRIVENGQERVEVEEDGQLKSVTVNGKE 224 Query: 151 EEPWM 137 + WM Sbjct: 225 QLKWM 229
>CCDC5_HUMAN (Q96CS2) Coiled-coil domain-containing protein 5 (Enhancer of| invasion-cluster) (HEI-C) Length = 278 Score = 28.1 bits (61), Expect = 9.7 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = -3 Query: 238 LMNHLSRNGRERKREVYLQVEVVSRDGREEE 146 +++HLS R R R+VYL +E + + E E Sbjct: 36 ILHHLSERNRVRDRDVYLVIEDLKQKASEYE 66 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,740,993 Number of Sequences: 219361 Number of extensions: 1012980 Number of successful extensions: 2748 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2691 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2742 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
