ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl53e02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464667.1| Oryza sativa (japonica cultivar-group), mRNA 153 5e-34
2dbj|AK066996.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 5e-34
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 123 5e-25
4dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic D... 123 5e-25
5ref|XM_450615.1| Oryza sativa (japonica cultivar-group), mRNA 115 1e-22
6dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
7dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
8ref|XM_450614.1| Oryza sativa (japonica cultivar-group), mRNA 84 4e-13
9dbj|AK068165.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 4e-13
10ref|XM_482249.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.001
11dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
12dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
13dbj|AK120068.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
14dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
15gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 46 0.086
16ref|XM_754661.1| Ustilago maydis 521 hypothetical protein (UM036... 44 0.34
17gb|DQ103310.1| Phytophthora ramorum clone F07,11A microsatellite... 44 0.34
18gb|DQ103308.1| Phytophthora ramorum clone D07,7A microsatellite ... 44 0.34
19dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.34
20dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.34
21dbj|AP003511.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.34
22gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
23emb|BX059458.1|CNS09I1I Single read from an extremity of a full-... 42 1.3
24emb|BX059457.1|CNS09I1H Single read from an extremity of a full-... 42 1.3
25emb|AJ576039.1|GWE576039 Gordonia westfalica strain DSM44215T pl... 42 1.3
26gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 42 1.3
27dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
28ref|XM_307687.2| Anopheles gambiae str. PEST ENSANGP00000017104 ... 42 1.3
29gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 42 1.3
30gb|AC135561.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.3
31gb|AC145327.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.3
32gb|DQ481667.1| Takifugu rubripes HoxCa gene cluster, complete se... 40 5.3
33emb|Z68315.1|CEF28C6 Caenorhabditis elegans Cosmid F28C6, comple... 40 5.3
34gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete s... 40 5.3
35emb|BX294150.1| Pirellula sp. strain 1 complete genome; segment ... 40 5.3
36gb|AE005942.1| Caulobacter crescentus CB15 section 268 of 359 of... 40 5.3
37ref|NM_063421.2| Caenorhabditis elegans Cleavage and Polyadenyla... 40 5.3
38dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
39dbj|AP006524.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
40dbj|AP005929.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
41dbj|AK109974.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
42gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.3
43emb|AL772348.2| Mouse DNA sequence from clone RP23-316A19 on chr... 40 5.3
44dbj|D12511.1|MRUPUO M.rubens gene for putrescine oxidase, comple... 40 5.3 
>ref|XM_464667.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3020

 Score =  153 bits (77), Expect = 5e-34
 Identities = 263/325 (80%)
 Strand = Plus / Plus

                                                                       
Query: 74  ggagcagagcgccgagcacttcagggggcaggcgcggctgccgggcttcgcggcaccgcg 133
           |||||||||||| ||||| |||||||| |||||| |||| ||||| |||||||| || ||
Sbjct: 117 ggagcagagcgcggagcagttcaggggccaggcgaggctcccggggttcgcggcgccccg 176

                                                                       
Query: 134 gcggtacgatctgcacctcacgccggacctcgccgcctgcaccttcgctggctcggtgtc 193
           ||||||||| ||||  |||   || ||||||| ||  ||| ||||| | || || |||  
Sbjct: 177 gcggtacgacctgcggctcgtccccgacctcgacgggtgcgccttcacgggatctgtgga 236

                                                                       
Query: 194 ggtctccgtcgacgtcgccgcgcccacgcgtttcctcgtgctcaacgccgccgacctcga 253
            ||||||||||||||| | ||||||||  | ||||||||||||||||||||||| |||||
Sbjct: 237 cgtctccgtcgacgtcacggcgcccaccaggttcctcgtgctcaacgccgccgagctcga 296

                                                                       
Query: 254 ggtgtcccccggggacgtgcacttcgcccccaagggctccgcccaggtgttactccctgt 313
           ||| |||||||||| ||| || |||   ||| | ||| |||  |||| | | | ||| | 
Sbjct: 297 ggtctcccccgggggcgtccagttcaagccccatggcgccgagcaggagctgcacccagc 356

                                                                       
Query: 314 ggaggttaccagtgcactggaggatgagatcttgattattcgcttcaatgaagtgcttcc 373
           ||||||||||| ||  |  |||||||||||| ||||||| ||||||||||| || |||||
Sbjct: 357 ggaggttaccaatgtgccagaggatgagatcctgattatccgcttcaatgaggttcttcc 416

                                    
Query: 374 tctgggggagggaactttggtaatt 398
           | | |||||||||||||| ||||||
Sbjct: 417 tgtaggggagggaactttagtaatt 441
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>dbj|AK066996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089H24, full
           insert sequence
          Length = 3020

 Score =  153 bits (77), Expect = 5e-34
 Identities = 263/325 (80%)
 Strand = Plus / Plus

                                                                       
Query: 74  ggagcagagcgccgagcacttcagggggcaggcgcggctgccgggcttcgcggcaccgcg 133
           |||||||||||| ||||| |||||||| |||||| |||| ||||| |||||||| || ||
Sbjct: 117 ggagcagagcgcggagcagttcaggggccaggcgaggctcccggggttcgcggcgccccg 176

                                                                       
Query: 134 gcggtacgatctgcacctcacgccggacctcgccgcctgcaccttcgctggctcggtgtc 193
           ||||||||| ||||  |||   || ||||||| ||  ||| ||||| | || || |||  
Sbjct: 177 gcggtacgacctgcggctcgtccccgacctcgacgggtgcgccttcacgggatctgtgga 236

                                                                       
Query: 194 ggtctccgtcgacgtcgccgcgcccacgcgtttcctcgtgctcaacgccgccgacctcga 253
            ||||||||||||||| | ||||||||  | ||||||||||||||||||||||| |||||
Sbjct: 237 cgtctccgtcgacgtcacggcgcccaccaggttcctcgtgctcaacgccgccgagctcga 296

                                                                       
Query: 254 ggtgtcccccggggacgtgcacttcgcccccaagggctccgcccaggtgttactccctgt 313
           ||| |||||||||| ||| || |||   ||| | ||| |||  |||| | | | ||| | 
Sbjct: 297 ggtctcccccgggggcgtccagttcaagccccatggcgccgagcaggagctgcacccagc 356

                                                                       
Query: 314 ggaggttaccagtgcactggaggatgagatcttgattattcgcttcaatgaagtgcttcc 373
           ||||||||||| ||  |  |||||||||||| ||||||| ||||||||||| || |||||
Sbjct: 357 ggaggttaccaatgtgccagaggatgagatcctgattatccgcttcaatgaggttcttcc 416

                                    
Query: 374 tctgggggagggaactttggtaatt 398
           | | |||||||||||||| ||||||
Sbjct: 417 tgtaggggagggaactttagtaatt 441
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  123 bits (62), Expect = 5e-25
 Identities = 161/194 (82%)
 Strand = Plus / Plus

                                                                           
Query: 74      ggagcagagcgccgagcacttcagggggcaggcgcggctgccgggcttcgcggcaccgcg 133
               |||||||||||| ||||| |||||||| |||||| |||| ||||| |||||||| || ||
Sbjct: 6598438 ggagcagagcgcggagcagttcaggggccaggcgaggctcccggggttcgcggcgccccg 6598497

                                                                           
Query: 134     gcggtacgatctgcacctcacgccggacctcgccgcctgcaccttcgctggctcggtgtc 193
               ||||||||| ||||  |||   || ||||||| ||  ||| ||||| | || || |||  
Sbjct: 6598498 gcggtacgacctgcggctcgtccccgacctcgacgggtgcgccttcacgggatctgtgga 6598557

                                                                           
Query: 194     ggtctccgtcgacgtcgccgcgcccacgcgtttcctcgtgctcaacgccgccgacctcga 253
                ||||||||||||||| | ||||||||  | ||||||||||||||||||||||| |||||
Sbjct: 6598558 cgtctccgtcgacgtcacggcgcccaccaggttcctcgtgctcaacgccgccgagctcga 6598617

                             
Query: 254     ggtgtcccccgggg 267
               ||| ||||||||||
Sbjct: 6598618 ggtctcccccgggg 6598631



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 59/66 (89%)
 Strand = Plus / Plus

                                                                           
Query: 333     gaggatgagatcttgattattcgcttcaatgaagtgcttcctctgggggagggaactttg 392
               |||||||||||| ||||||| ||||||||||| || |||||| | |||||||||||||| 
Sbjct: 6599279 gaggatgagatcctgattatccgcttcaatgaggttcttcctgtaggggagggaacttta 6599338

                     
Query: 393     gtaatt 398
               ||||||
Sbjct: 6599339 gtaatt 6599344
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>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0027A02
          Length = 140402

 Score =  123 bits (62), Expect = 5e-25
 Identities = 161/194 (82%)
 Strand = Plus / Plus

                                                                         
Query: 74    ggagcagagcgccgagcacttcagggggcaggcgcggctgccgggcttcgcggcaccgcg 133
             |||||||||||| ||||| |||||||| |||||| |||| ||||| |||||||| || ||
Sbjct: 32813 ggagcagagcgcggagcagttcaggggccaggcgaggctcccggggttcgcggcgccccg 32872

                                                                         
Query: 134   gcggtacgatctgcacctcacgccggacctcgccgcctgcaccttcgctggctcggtgtc 193
             ||||||||| ||||  |||   || ||||||| ||  ||| ||||| | || || |||  
Sbjct: 32873 gcggtacgacctgcggctcgtccccgacctcgacgggtgcgccttcacgggatctgtgga 32932

                                                                         
Query: 194   ggtctccgtcgacgtcgccgcgcccacgcgtttcctcgtgctcaacgccgccgacctcga 253
              ||||||||||||||| | ||||||||  | ||||||||||||||||||||||| |||||
Sbjct: 32933 cgtctccgtcgacgtcacggcgcccaccaggttcctcgtgctcaacgccgccgagctcga 32992

                           
Query: 254   ggtgtcccccgggg 267
             ||| ||||||||||
Sbjct: 32993 ggtctcccccgggg 33006



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 59/66 (89%)
 Strand = Plus / Plus

                                                                         
Query: 333   gaggatgagatcttgattattcgcttcaatgaagtgcttcctctgggggagggaactttg 392
             |||||||||||| ||||||| ||||||||||| || |||||| | |||||||||||||| 
Sbjct: 33654 gaggatgagatcctgattatccgcttcaatgaggttcttcctgtaggggagggaacttta 33713

                   
Query: 393   gtaatt 398
             ||||||
Sbjct: 33714 gtaatt 33719
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>ref|XM_450615.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2622

 Score =  115 bits (58), Expect = 1e-22
 Identities = 130/154 (84%)
 Strand = Plus / Plus

                                                                       
Query: 99  gggcaggcgcggctgccgggcttcgcggcaccgcggcggtacgatctgcacctcacgccg 158
           |||||||||||||||||| | |||||||| |||||||||||||| || |  |||  ||||
Sbjct: 28  gggcaggcgcggctgccgcggttcgcggcgccgcggcggtacgagctccggctccggccg 87

                                                                       
Query: 159 gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 218
           |||||||||||||||   ||| | |||  || ||| ||  ||||||||||| ||||||||
Sbjct: 88  gacctcgccgcctgcgtgttctccggcgaggcgtccgtggccgtcgacgtctccgcgccc 147

                                             
Query: 219 acgcgtttcctcgtgctcaacgccgccgacctcg 252
           || || |||||||| |||||||||||||||||||
Sbjct: 148 acccgcttcctcgtcctcaacgccgccgacctcg 181
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  115 bits (58), Expect = 1e-22
 Identities = 130/154 (84%)
 Strand = Plus / Plus

                                                                            
Query: 99       gggcaggcgcggctgccgggcttcgcggcaccgcggcggtacgatctgcacctcacgccg 158
                |||||||||||||||||| | |||||||| |||||||||||||| || |  |||  ||||
Sbjct: 11799304 gggcaggcgcggctgccgcggttcgcggcgccgcggcggtacgagctccggctccggccg 11799363

                                                                            
Query: 159      gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 218
                |||||||||||||||   ||| | |||  || ||| ||  ||||||||||| ||||||||
Sbjct: 11799364 gacctcgccgcctgcgtgttctccggcgaggcgtccgtggccgtcgacgtctccgcgccc 11799423

                                                  
Query: 219      acgcgtttcctcgtgctcaacgccgccgacctcg 252
                || || |||||||| |||||||||||||||||||
Sbjct: 11799424 acccgcttcctcgtcctcaacgccgccgacctcg 11799457



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 126/154 (81%)
 Strand = Plus / Plus

                                                                            
Query: 99       gggcaggcgcggctgccgggcttcgcggcaccgcggcggtacgatctgcacctcacgccg 158
                ||||||||| |||||||| | |||||||| |||||||||||||| || | ||||  ||| 
Sbjct: 11790120 gggcaggcgaggctgccgcggttcgcggcgccgcggcggtacgagctccgcctccggccc 11790179

                                                                            
Query: 159      gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 218
                ||||||| ||| |||  |||| | |||   | ||| ||   |||||||||| ||||||||
Sbjct: 11790180 gacctcgacgcatgcgtcttcaccggcgacgcgtccgtggtcgtcgacgtctccgcgccc 11790239

                                                  
Query: 219      acgcgtttcctcgtgctcaacgccgccgacctcg 252
                || || |||||||| |||||||||||||||||||
Sbjct: 11790240 acccgcttcctcgtcctcaacgccgccgacctcg 11790273
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>dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1506_A04
          Length = 114998

 Score =  115 bits (58), Expect = 1e-22
 Identities = 130/154 (84%)
 Strand = Plus / Plus

                                                                         
Query: 99    gggcaggcgcggctgccgggcttcgcggcaccgcggcggtacgatctgcacctcacgccg 158
             |||||||||||||||||| | |||||||| |||||||||||||| || |  |||  ||||
Sbjct: 42122 gggcaggcgcggctgccgcggttcgcggcgccgcggcggtacgagctccggctccggccg 42181

                                                                         
Query: 159   gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 218
             |||||||||||||||   ||| | |||  || ||| ||  ||||||||||| ||||||||
Sbjct: 42182 gacctcgccgcctgcgtgttctccggcgaggcgtccgtggccgtcgacgtctccgcgccc 42241

                                               
Query: 219   acgcgtttcctcgtgctcaacgccgccgacctcg 252
             || || |||||||| |||||||||||||||||||
Sbjct: 42242 acccgcttcctcgtcctcaacgccgccgacctcg 42275



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 126/154 (81%)
 Strand = Plus / Plus

                                                                         
Query: 99    gggcaggcgcggctgccgggcttcgcggcaccgcggcggtacgatctgcacctcacgccg 158
             ||||||||| |||||||| | |||||||| |||||||||||||| || | ||||  ||| 
Sbjct: 32938 gggcaggcgaggctgccgcggttcgcggcgccgcggcggtacgagctccgcctccggccc 32997

                                                                         
Query: 159   gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 218
             ||||||| ||| |||  |||| | |||   | ||| ||   |||||||||| ||||||||
Sbjct: 32998 gacctcgacgcatgcgtcttcaccggcgacgcgtccgtggtcgtcgacgtctccgcgccc 33057

                                               
Query: 219   acgcgtttcctcgtgctcaacgccgccgacctcg 252
             || || |||||||| |||||||||||||||||||
Sbjct: 33058 acccgcttcctcgtcctcaacgccgccgacctcg 33091
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>ref|XM_450614.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2984

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 126/154 (81%)
 Strand = Plus / Plus

                                                                       
Query: 99  gggcaggcgcggctgccgggcttcgcggcaccgcggcggtacgatctgcacctcacgccg 158
           ||||||||| |||||||| | |||||||| |||||||||||||| || | ||||  ||| 
Sbjct: 23  gggcaggcgaggctgccgcggttcgcggcgccgcggcggtacgagctccgcctccggccc 82

                                                                       
Query: 159 gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 218
           ||||||| ||| |||  |||| | |||   | ||| ||   |||||||||| ||||||||
Sbjct: 83  gacctcgacgcatgcgtcttcaccggcgacgcgtccgtggtcgtcgacgtctccgcgccc 142

                                             
Query: 219 acgcgtttcctcgtgctcaacgccgccgacctcg 252
           || || |||||||| |||||||||||||||||||
Sbjct: 143 acccgcttcctcgtcctcaacgccgccgacctcg 176
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>dbj|AK068165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134N07, full
           insert sequence
          Length = 2985

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 126/154 (81%)
 Strand = Plus / Plus

                                                                       
Query: 99  gggcaggcgcggctgccgggcttcgcggcaccgcggcggtacgatctgcacctcacgccg 158
           ||||||||| |||||||| | |||||||| |||||||||||||| || | ||||  ||| 
Sbjct: 24  gggcaggcgaggctgccgcggttcgcggcgccgcggcggtacgagctccgcctccggccc 83

                                                                       
Query: 159 gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 218
           ||||||| ||| |||  |||| | |||   | ||| ||   |||||||||| ||||||||
Sbjct: 84  gacctcgacgcatgcgtcttcaccggcgacgcgtccgtggtcgtcgacgtctccgcgccc 143

                                             
Query: 219 acgcgtttcctcgtgctcaacgccgccgacctcg 252
           || || |||||||| |||||||||||||||||||
Sbjct: 144 acccgcttcctcgtcctcaacgccgccgacctcg 177
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>ref|XM_482249.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2685

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 77/94 (81%)
 Strand = Plus / Plus

                                                                       
Query: 159 gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 218
           ||||||||||||||| ||||| | ||||| |   | ||| |||||| |||| |||| || 
Sbjct: 88  gacctcgccgcctgcgccttctccggctccgccgccgtcgccgtcgccgtctccgccccg 147

                                             
Query: 219 acgcgtttcctcgtgctcaacgccgccgacctcg 252
           || || |||||||| |||||||||||||| ||||
Sbjct: 148 acccgattcctcgtcctcaacgccgccgagctcg 181
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 77/94 (81%)
 Strand = Plus / Plus

                                                                            
Query: 159      gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 218
                ||||||||||||||| ||||| | ||||| |   | ||| |||||| |||| |||| || 
Sbjct: 19014761 gacctcgccgcctgcgccttctccggctccgccgccgtcgccgtcgccgtctccgccccg 19014820

                                                  
Query: 219      acgcgtttcctcgtgctcaacgccgccgacctcg 252
                || || |||||||| |||||||||||||| ||||
Sbjct: 19014821 acccgattcctcgtcctcaacgccgccgagctcg 19014854
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>dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1198_B10
          Length = 119768

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 77/94 (81%)
 Strand = Plus / Plus

                                                                         
Query: 159   gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 218
             ||||||||||||||| ||||| | ||||| |   | ||| |||||| |||| |||| || 
Sbjct: 99681 gacctcgccgcctgcgccttctccggctccgccgccgtcgccgtcgccgtctccgccccg 99740

                                               
Query: 219   acgcgtttcctcgtgctcaacgccgccgacctcg 252
             || || |||||||| |||||||||||||| ||||
Sbjct: 99741 acccgattcctcgtcctcaacgccgccgagctcg 99774
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>dbj|AK120068.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N11, full
           insert sequence
          Length = 2975

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 77/94 (81%)
 Strand = Plus / Plus

                                                                       
Query: 159 gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 218
           ||||||||||||||| ||||| | ||||| |   | ||| |||||| |||| |||| || 
Sbjct: 187 gacctcgccgcctgcgccttctccggctccgccgccgtcgccgtcgccgtctccgccccg 246

                                             
Query: 219 acgcgtttcctcgtgctcaacgccgccgacctcg 252
           || || |||||||| |||||||||||||| ||||
Sbjct: 247 acccgattcctcgtcctcaacgccgccgagctcg 280
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>dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1051_A08
          Length = 137583

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 77/94 (81%)
 Strand = Plus / Plus

                                                                         
Query: 159   gacctcgccgcctgcaccttcgctggctcggtgtcggtctccgtcgacgtcgccgcgccc 218
             ||||||||||||||| ||||| | ||||| |   | ||| |||||| |||| |||| || 
Sbjct: 39548 gacctcgccgcctgcgccttctccggctccgccgccgtcgccgtcgccgtctccgccccg 39607

                                               
Query: 219   acgcgtttcctcgtgctcaacgccgccgacctcg 252
             || || |||||||| |||||||||||||| ||||
Sbjct: 39608 acccgattcctcgtcctcaacgccgccgagctcg 39641
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 52    aggcgaccatggcggcggagctggagc 78
             |||||||| ||||||||||||||||||
Sbjct: 86379 aggcgaccgtggcggcggagctggagc 86353
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>ref|XM_754661.1| Ustilago maydis 521 hypothetical protein (UM03607.1) partial mRNA
          Length = 5148

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 39  ccaccgacggccgaggcgaccatggc 64
           ||||||||||||||| ||||||||||
Sbjct: 539 ccaccgacggccgagtcgaccatggc 514
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>gb|DQ103310.1| Phytophthora ramorum clone F07,11A microsatellite 97 sequence
          Length = 312

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 234 ctcaacgccgccgacctcgagg 255
           ||||||||||||||||||||||
Sbjct: 226 ctcaacgccgccgacctcgagg 205
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>gb|DQ103308.1| Phytophthora ramorum clone D07,7A microsatellite 97 sequence
          Length = 303

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 234 ctcaacgccgccgacctcgagg 255
           ||||||||||||||||||||||
Sbjct: 214 ctcaacgccgccgacctcgagg 193
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                  
Query: 74       ggagcagagcgccgagcacttcagggggcaggcg 107
                |||||||||||| ||||| |||||||| ||||||
Sbjct: 12319124 ggagcagagcgcggagcagttcaggggccaggcg 12319091



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 178      tcgctggctcggtgtcggtc 197
                ||||||||||||||||||||
Sbjct: 18027635 tcgctggctcggtgtcggtc 18027616
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 43      cgacggccgaggcgaccatggc 64
               ||||||||||||||||||||||
Sbjct: 5315985 cgacggccgaggcgaccatggc 5316006



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 42      ccgacggccgaggcgaccatggcgg 66
               |||||||||||||||||| ||||||
Sbjct: 2745308 ccgacggccgaggcgaccctggcgg 2745332
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>dbj|AP003511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0578B12
          Length = 151192

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 74    ggagcagagcgccgagcacttcagggggcaggcg 107
             |||||||||||| ||||| |||||||| ||||||
Sbjct: 35584 ggagcagagcgcggagcagttcaggggccaggcg 35551
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>gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0088M05, complete sequence
          Length = 153368

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 203   cgacgtcgccgcgcccacgcgtttcctcg 231
             |||||||||||||||| |||| |||||||
Sbjct: 97286 cgacgtcgccgcgccctcgcggttcctcg 97258
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>emb|BX059458.1|CNS09I1I Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC4BC04 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 920

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 20  tctctccttccctcacactcc 40
           |||||||||||||||||||||
Sbjct: 405 tctctccttccctcacactcc 425
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>emb|BX059457.1|CNS09I1H Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC4BC04 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 925

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 20  tctctccttccctcacactcc 40
           |||||||||||||||||||||
Sbjct: 922 tctctccttccctcacactcc 902
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>emb|AJ576039.1|GWE576039 Gordonia westfalica strain DSM44215T plasmid pKB1 complete genome
          Length = 101016

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 239  cgccgccgacctcgaggtgtc 259
            |||||||||||||||||||||
Sbjct: 1808 cgccgccgacctcgaggtgtc 1788
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 229     tcgtgctcaacgccgccgacctcga 253
               |||||||||||| ||||||||||||
Sbjct: 4430018 tcgtgctcaacgacgccgacctcga 4430042
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 203      cgacgtcgccgcgcccacgcgtttcctcg 231
                |||||||||||||||| |||| |||||||
Sbjct: 18304074 cgacgtcgccgcgccctcgcggttcctcg 18304046
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>ref|XM_307687.2| Anopheles gambiae str. PEST ENSANGP00000017104
           (ENSANGG00000014615), partial mRNA
          Length = 672

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 20  tctctccttccctcacactcc 40
           |||||||||||||||||||||
Sbjct: 474 tctctccttccctcacactcc 454
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 107    gcggctgccgggcttcgcggc 127
              |||||||||||||||||||||
Sbjct: 373692 gcggctgccgggcttcgcggc 373712
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>gb|AC135561.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0086N07
              map S790A, complete sequence
          Length = 178523

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 181    ctggctcggtgtcggtctcc 200
              ||||||||||||||||||||
Sbjct: 165172 ctggctcggtgtcggtctcc 165191
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>gb|AC145327.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0095J10 map near S6115, complete sequence
          Length = 123717

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   ctggctcggtgtcggtctcc 200
             ||||||||||||||||||||
Sbjct: 90805 ctggctcggtgtcggtctcc 90786
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>gb|DQ481667.1| Takifugu rubripes HoxCa gene cluster, complete sequence
          Length = 378763

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     tctctccttccctcacactc 39
              ||||||||||||||||||||
Sbjct: 193567 tctctccttccctcacactc 193548
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>emb|Z68315.1|CEF28C6 Caenorhabditis elegans Cosmid F28C6, complete sequence
          Length = 24032

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    ggcggcggagctggagcaga 81
             ||||||||||||||||||||
Sbjct: 13359 ggcggcggagctggagcaga 13378
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>gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete sequence
          Length = 634917

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 56     gaccatggcggcggagctgg 75
              ||||||||||||||||||||
Sbjct: 394720 gaccatggcggcggagctgg 394739
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>emb|BX294150.1| Pirellula sp. strain 1 complete genome; segment 18/24
          Length = 283050

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      agcatccgacgcttgcaaat 20
              ||||||||||||||||||||
Sbjct: 121403 agcatccgacgcttgcaaat 121422
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>gb|AE005942.1| Caulobacter crescentus CB15 section 268 of 359 of the complete genome
          Length = 10254

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 101  gcaggcgcggctgccgggct 120
            ||||||||||||||||||||
Sbjct: 4986 gcaggcgcggctgccgggct 4967
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>ref|NM_063421.2| Caenorhabditis elegans Cleavage and Polyadenylation Factor family
           member (cpf-1) (cpf-1) mRNA, complete cds
          Length = 1312

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 62  ggcggcggagctggagcaga 81
           ||||||||||||||||||||
Sbjct: 131 ggcggcggagctggagcaga 112
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 181      ctggctcggtgtcggtctcc 200
                ||||||||||||||||||||
Sbjct: 13018908 ctggctcggtgtcggtctcc 13018889
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>dbj|AP006524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0077M23
          Length = 167264

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   tcgctggctcggtgtcggtc 197
             ||||||||||||||||||||
Sbjct: 23285 tcgctggctcggtgtcggtc 23266
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>dbj|AP005929.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0071G09
          Length = 169148

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   tcgctggctcggtgtcggtc 197
             ||||||||||||||||||||
Sbjct: 93941 tcgctggctcggtgtcggtc 93922
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>dbj|AK109974.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-159-C09,
          full insert sequence
          Length = 4771

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 42 ccgacggccgaggcgaccatggcg 65
          |||||||||||| |||||||||||
Sbjct: 78 ccgacggccgagtcgaccatggcg 55
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 181      ctggctcggtgtcggtctcc 200
                ||||||||||||||||||||
Sbjct: 13099087 ctggctcggtgtcggtctcc 13099068
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>emb|AL772348.2| Mouse DNA sequence from clone RP23-316A19 on chromosome X, complete
             sequence
          Length = 173365

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    atctctccttccctcacact 38
             ||||||||||||||||||||
Sbjct: 47304 atctctccttccctcacact 47323
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>dbj|D12511.1|MRUPUO M.rubens gene for putrescine oxidase, complete cds
          Length = 2386

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 56   gaccatggcggcggagctgg 75
            ||||||||||||||||||||
Sbjct: 1195 gaccatggcggcggagctgg 1214


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,602,242
Number of Sequences: 3902068
Number of extensions: 2602242
Number of successful extensions: 59905
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58965
Number of HSP's gapped (non-prelim): 932
length of query: 398
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 376
effective length of database: 17,147,199,772
effective search space: 6447347114272
effective search space used: 6447347114272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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