ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl53e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CMTA4_ARATH (Q9FYG2) Calmodulin-binding transcription activator ... 73 2e-16
2CMTA2_ARATH (Q6NPP4) Calmodulin-binding transcription activator ... 71 4e-15
3CMTA1_ARATH (Q9FY74) Calmodulin-binding transcription activator ... 69 2e-14
4CMTA3_ARATH (Q8GSA7) Calmodulin-binding transcription activator ... 66 3e-13
5CMTA5_ARATH (O23463) Calmodulin-binding transcription activator ... 51 2e-08
6CMTA6_ARATH (Q9LSP8) Calmodulin-binding transcription activator ... 36 8e-04
7CMTA2_HUMAN (O94983) Calmodulin-binding transcription activator 2 37 0.006
8CMTA2_MOUSE (Q80Y50) Calmodulin-binding transcription activator 2 37 0.027
9CMTA1_HUMAN (Q9Y6Y1) Calmodulin-binding transcription activator 1 36 0.045
10CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor 32 0.85
11CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor 31 1.1
12CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Conta... 30 1.9
13CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contain... 30 1.9
14CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor 30 1.9
15CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor 30 1.9
16CO9A1_HUMAN (P20849) Collagen alpha-1(IX) chain precursor 30 3.2
17CO2A1_CHICK (P02460) Collagen alpha-1(II) chain precursor (Fragm... 30 3.2
18KRA54_HUMAN (Q6L8H1) Keratin-associated protein 5-4 (Keratin-ass... 29 4.2
19SKI2_YEAST (P35207) Antiviral helicase SKI2 (EC 3.6.1.-) 29 5.5
20CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Conta... 29 5.5
21CO9A1_MOUSE (Q05722) Collagen alpha-1(IX) chain precursor 29 5.5
22CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain 29 5.5
23CO1A2_ONCMY (O93484) Collagen alpha-2(I) chain precursor 29 5.5
24DMI1_ORYSA (Q5N941) Putative ion channel DMI1, chloroplast precu... 29 5.5
25CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor 29 5.5
26SNTB2_MOUSE (Q61235) Beta-2-syntrophin (59 kDa dystrophin-associ... 28 7.2
27SYN_XYLFT (Q87A82) Asparaginyl-tRNA synthetase (EC 6.1.1.22) (As... 28 7.2
28SYN_XYLFA (Q9PAF5) Asparaginyl-tRNA synthetase (EC 6.1.1.22) (As... 28 7.2
29SYNJ1_HUMAN (O43426) Synaptojanin-1 (EC 3.1.3.36) (Synaptic inos... 28 7.2
30CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor 28 7.2
31V06_BPT7 (P03778) Protein 0.6B [Contains: Protein 0.6A] 28 9.4
32CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor 28 9.4
33CO9A1_RAT (P20850) Collagen alpha-1(IX) chain (Fragment) 28 9.4
34CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor 28 9.4
35CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor 28 9.4

>CMTA4_ARATH (Q9FYG2) Calmodulin-binding transcription activator 4|
           (Signal-responsive protein 5) (Ethylene-induced
           calmodulin-binding protein d) (EICBP.d)
           (Ethylene-induced calmodulin-binding protein 4) (EICBP4)
           (AtFIN21)
          Length = 1016

 Score = 73.2 bits (178), Expect(2) = 2e-16
 Identities = 35/60 (58%), Positives = 43/60 (71%)
 Frame = +1

Query: 199 TRWLKLREVLDILQNSELFGIHNRTPQRPPSGSWFLFNRRVHRFFRNDGYVWQKKKMGRA 378
           +RWLK  EVL ILQN E   + N  PQRP SGS  LFN+RV +FFR DG+ W++K+ GRA
Sbjct: 47  SRWLKPPEVLFILQNHESLTLTNTAPQRPTSGSLLLFNKRVLKFFRKDGHQWRRKRDGRA 106



 Score = 30.8 bits (68), Expect(2) = 2e-16
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +3

Query: 360 KENGKSGHESHEYLKVDNVKALNC 431
           K +G++  E+HE LKV N +ALNC
Sbjct: 101 KRDGRAIAEAHERLKVGNAEALNC 124



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>CMTA2_ARATH (Q6NPP4) Calmodulin-binding transcription activator 2|
           (Signal-responsive protein 4) (Ethylene-induced
           calmodulin-binding protein c) (EICBP.c) (AtER66)
          Length = 1050

 Score = 70.9 bits (172), Expect(2) = 4e-15
 Identities = 31/58 (53%), Positives = 43/58 (74%)
 Frame = +1

Query: 202 RWLKLREVLDILQNSELFGIHNRTPQRPPSGSWFLFNRRVHRFFRNDGYVWQKKKMGR 375
           RWL+  E+ +IL+N + F I +  P RPPSGS FLF+R+V R+FR DG+ W+KKK G+
Sbjct: 25  RWLRPAEICEILRNHQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGK 82



 Score = 28.5 bits (62), Expect(2) = 4e-15
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 357 EKENGKSGHESHEYLKVDNVKALNC 431
           +K++GK+  E+HE LKV ++  L+C
Sbjct: 77  KKKDGKTVKEAHEKLKVGSIDVLHC 101



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>CMTA1_ARATH (Q9FY74) Calmodulin-binding transcription activator 1|
           (Signal-responsive protein 2) (Ethylene-induced
           calmodulin-binding protein b) (EICBP.b)
          Length = 1007

 Score = 68.6 bits (166), Expect(2) = 2e-14
 Identities = 31/58 (53%), Positives = 42/58 (72%)
 Frame = +1

Query: 202 RWLKLREVLDILQNSELFGIHNRTPQRPPSGSWFLFNRRVHRFFRNDGYVWQKKKMGR 375
           RWL+  E+ +ILQN   F I + +P RP SGS FLF+R+V R+FR DG+ W+KKK G+
Sbjct: 28  RWLRPTEICEILQNYHKFHIASESPTRPASGSLFLFDRKVLRYFRKDGHNWRKKKDGK 85



 Score = 28.5 bits (62), Expect(2) = 2e-14
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 357 EKENGKSGHESHEYLKVDNVKALNC 431
           +K++GK+  E+HE LKV ++  L+C
Sbjct: 80  KKKDGKTIREAHEKLKVGSIDVLHC 104



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>CMTA3_ARATH (Q8GSA7) Calmodulin-binding transcription activator 3|
           (Signal-responsive protein 1) (Ethylene-induced
           calmodulin-binding protein a) (EICBP.a)
           (Ethylene-induced calmodulin-binding protein 1) (EICBP1)
          Length = 1032

 Score = 65.9 bits (159), Expect(2) = 3e-13
 Identities = 30/60 (50%), Positives = 41/60 (68%)
 Frame = +1

Query: 196 RTRWLKLREVLDILQNSELFGIHNRTPQRPPSGSWFLFNRRVHRFFRNDGYVWQKKKMGR 375
           R RWL+  E+ +ILQN + F I    P  P SGS F+F+R+V R+FR DG+ W+KKK G+
Sbjct: 23  RHRWLRPPEICEILQNYQRFQISTEPPTTPSSGSVFMFDRKVLRYFRKDGHNWRKKKDGK 82



 Score = 27.3 bits (59), Expect(2) = 3e-13
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 357 EKENGKSGHESHEYLKVDNVKALNC 431
           +K++GK+  E+HE LK  +V  L+C
Sbjct: 77  KKKDGKTVKEAHERLKAGSVDVLHC 101



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>CMTA5_ARATH (O23463) Calmodulin-binding transcription activator 5|
           (Signal-responsive protein 6) (Ethylene-induced
           calmodulin-binding protein f) (EICBP.f)
          Length = 923

 Score = 50.8 bits (120), Expect(2) = 2e-08
 Identities = 24/59 (40%), Positives = 38/59 (64%)
 Frame = +1

Query: 199 TRWLKLREVLDILQNSELFGIHNRTPQRPPSGSWFLFNRRVHRFFRNDGYVWQKKKMGR 375
           +RWL+  E+  +L N + F I+ +    P SG+  LF+R++ R FR DG+ W+KKK G+
Sbjct: 34  SRWLRPNEIHALLCNHKFFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGK 92



 Score = 25.8 bits (55), Expect(2) = 2e-08
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = +3

Query: 357 EKENGKSGHESHEYLKVDNVKALN 428
           +K++GK+  E+HE+LKV N + ++
Sbjct: 87  KKKDGKTIKEAHEHLKVGNEERIH 110



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>CMTA6_ARATH (Q9LSP8) Calmodulin-binding transcription activator 6|
           (Signal-responsive protein 3) (Ethylene-induced
           calmodulin-binding protein e) (EICBP.e)
           (Ethylene-induced calmodulin-binding protein 5) (EICBP5)
          Length = 838

 Score = 35.8 bits (81), Expect(2) = 8e-04
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = +1

Query: 196 RTRWLKLREVLDILQNSELFGIHNRTPQRPPSGSWFLFNRRVHRFFRNDGYVWQKKKMGR 375
           ++RWL+  E+  IL                  G   LF+R++ R FR DG+ W+KKK GR
Sbjct: 33  KSRWLRPNEIHAIL-----------------CGRIILFDRKMLRNFRKDGHNWKKKKDGR 75



 Score = 25.0 bits (53), Expect(2) = 8e-04
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = +3

Query: 357 EKENGKSGHESHEYLKVDNVKALN 428
           +K++G++  E+HE+LKV N + ++
Sbjct: 70  KKKDGRTVKEAHEHLKVGNEERIH 93



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>CMTA2_HUMAN (O94983) Calmodulin-binding transcription activator 2|
          Length = 1202

 Score = 36.6 bits (83), Expect(2) = 0.006
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
 Frame = +1

Query: 196 RTRWLKLREVLDIL----QNSELFGIHNRTPQRPPSGSWFLFNRRVHRFFRNDGYVWQKK 363
           R RW    E+   L    ++ E      +T  RP +GS  L+NR+  ++ R DGY+W+K+
Sbjct: 38  RLRWNTNEEIASYLITFEKHDEWLSCAPKT--RPQNGSIILYNRKKVKY-RKDGYLWKKR 94

Query: 364 KMGR 375
           K G+
Sbjct: 95  KDGK 98



 Score = 21.2 bits (43), Expect(2) = 0.006
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 357 EKENGKSGHESHEYLKVDNVKAL 425
           ++++GK+  E H  LKV  ++ L
Sbjct: 93  KRKDGKTTREDHMKLKVQGMECL 115



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>CMTA2_MOUSE (Q80Y50) Calmodulin-binding transcription activator 2|
          Length = 1208

 Score = 36.6 bits (83), Expect = 0.027
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
 Frame = +1

Query: 196 RTRWLKLREVLDIL----QNSELFGIHNRTPQRPPSGSWFLFNRRVHRFFRNDGYVWQKK 363
           R RW    E+   L    ++ E      +T  RP +GS  L+NR+  ++ R DGY+W+K+
Sbjct: 38  RLRWNTNEEIASYLITFEKHDEWLSCAPKT--RPQNGSIILYNRKKVKY-RKDGYLWKKR 94

Query: 364 KMGR 375
           K G+
Sbjct: 95  KDGK 98



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>CMTA1_HUMAN (Q9Y6Y1) Calmodulin-binding transcription activator 1|
          Length = 1673

 Score = 35.8 bits (81), Expect = 0.045
 Identities = 15/32 (46%), Positives = 23/32 (71%)
 Frame = +1

Query: 280 RPPSGSWFLFNRRVHRFFRNDGYVWQKKKMGR 375
           RP +GS  L+NR+  ++ R DGY W+K+K G+
Sbjct: 101 RPQNGSMILYNRKKVKY-RKDGYCWKKRKDGK 131



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>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 31.6 bits (70), Expect = 0.85
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 137 PASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAG 12
           P   N  +G   P+G +GG+G + P  PP  +   G S  AG
Sbjct: 530 PDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGTAG 571



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>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 137 PASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAG 12
           P   N  +G   P+G +GG+G + P  PP  +   G S  AG
Sbjct: 524 PDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPSGPAG 565



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>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:|
            Chondrocalcin]
          Length = 1418

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = -3

Query: 137  PASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSP 6
            P+      G   P G +G  G   P  PP  R R GE+  AG P
Sbjct: 1090 PSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPP 1133



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>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:|
            Chondrocalcin]
          Length = 1419

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = -3

Query: 137  PASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSP 6
            P+      G   P G +G  G   P  PP  R R GE+  AG P
Sbjct: 1091 PSGPRGPPGPVGPSGKDGSNGIPGPIGPPGPRGRSGETGPAGPP 1134



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>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 137 PASTNSGEGTKNPRGGEGGEGTEYPQAPP 51
           P   N  +G   P+G +GG+G + P  PP
Sbjct: 530 PDGNNGAQGPPGPQGVQGGKGEQGPAGPP 558



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>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 137 PASTNSGEGTKNPRGGEGGEGTEYPQAPP 51
           P   N  +G   P+G +GG+G + P  PP
Sbjct: 524 PDGNNGAQGPPGPQGVQGGKGEQGPAGPP 552



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>CO9A1_HUMAN (P20849) Collagen alpha-1(IX) chain precursor|
          Length = 921

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -3

Query: 125 NSGE-GTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSP 6
           N GE G + P G  G  G E P+ PP  R   GE    G P
Sbjct: 707 NPGEPGLRGPEGSRGLPGVEGPRGPPGPRGVQGEQGATGLP 747



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>CO2A1_CHICK (P02460) Collagen alpha-1(II) chain precursor (Fragment)|
          Length = 369

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = -3

Query: 137 PASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSP 6
           P+      G   P G +G  G   P  PP  R R GE   AG P
Sbjct: 41  PSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGEPGPAGPP 84



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>KRA54_HUMAN (Q6L8H1) Keratin-associated protein 5-4 (Keratin-associated protein|
           5.4) (Ultrahigh sulfur keratin-associated protein 5.4)
          Length = 288

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 230 IYCRIPSCSGSTIGPLRGHRVVLGFF--STEGCIASSGMMGMCG 355
           + C +P+CS S+ G   G +   G    S  GC++  G  G CG
Sbjct: 59  VCCCVPACSCSSCGSCGGSKGGYGSCGGSKGGCVSCGGSKGGCG 102



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>SKI2_YEAST (P35207) Antiviral helicase SKI2 (EC 3.6.1.-)|
          Length = 1287

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 140 APASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*G 30
           AP+ T++G G    RGG GG  T   +      TR G
Sbjct: 548 APSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGG 584



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>CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Contains:|
            Chondrocalcin]
          Length = 1459

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = -3

Query: 137  PASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSP 6
            P+      G   P G +G  G   P  PP  R R GE+   G P
Sbjct: 1131 PSGPRGPPGPVGPSGKDGSNGIPGPIGPPGPRGRSGETGPVGPP 1174



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>CO9A1_MOUSE (Q05722) Collagen alpha-1(IX) chain precursor|
          Length = 921

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -3

Query: 125 NSGE-GTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSP 6
           N GE G + P G  G  G E P+ PP  R   GE    G P
Sbjct: 707 NPGEPGLRGPEGIRGLPGVEGPRGPPGPRGMQGEQGATGLP 747



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>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain|
          Length = 1049

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 16/44 (36%), Positives = 17/44 (38%)
 Frame = -3

Query: 137  PASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSP 6
            PA      G   P G +G  G   P  PP  R   GE    GSP
Sbjct: 979  PAGPRGPVGPSGPPGKDGASGHPGPIGPPGPRGNRGERGSEGSP 1022



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>CO1A2_ONCMY (O93484) Collagen alpha-2(I) chain precursor|
          Length = 1356

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = -3

Query: 134 ASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSP 6
           AS  SG G K PRG +G  G   PQ P     + G   +AG P
Sbjct: 20  ASCQSG-GLKGPRGAKGPRGDRGPQGPNGRDGKAGLPGIAGPP 61



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>DMI1_ORYSA (Q5N941) Putative ion channel DMI1, chloroplast precursor|
          Length = 965

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 122 SGEGTKNPRGGEGGEGTEYPQAPP 51
           S  G  +P GG GGEG+  P+ PP
Sbjct: 4   SDGGEASPSGGGGGEGSPDPRRPP 27



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>CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor|
          Length = 1496

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 119 GEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSP 6
           G G   P+G  G  GT     PP  +   GE  +AG+P
Sbjct: 733 GHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTP 770



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>SNTB2_MOUSE (Q61235) Beta-2-syntrophin (59 kDa dystrophin-associated protein|
           A1, basic component 2) (Syntrophin 3) (SNT3)
           (Syntrophin-like) (SNTL)
          Length = 520

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 1   GGGDPAIQDSPHLVLVLGGACGYSVPSPPSPPRG 102
           GGG  ++  SP+         G   PSPP+PPRG
Sbjct: 57  GGGGESLPGSPNR--------GLGPPSPPAPPRG 82



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>SYN_XYLFT (Q87A82) Asparaginyl-tRNA synthetase (EC 6.1.1.22)|
           (Asparagine--tRNA ligase) (AsnRS)
          Length = 466

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 214 LREVLDILQNSELFGIHNRTPQRPPSGSWFLFNRRVHRFFRNDGYVW 354
           LREV  +   + LFG   R             ++ VHRFF  +GY W
Sbjct: 121 LREVAHLRPRTNLFGAVARIRH--------CLSQAVHRFFHENGYYW 159



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>SYN_XYLFA (Q9PAF5) Asparaginyl-tRNA synthetase (EC 6.1.1.22)|
           (Asparagine--tRNA ligase) (AsnRS)
          Length = 466

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 214 LREVLDILQNSELFGIHNRTPQRPPSGSWFLFNRRVHRFFRNDGYVW 354
           LREV  +   + LFG   R             ++ VHRFF  +GY W
Sbjct: 121 LREVAHLRPRTNLFGAVARIRH--------CLSQAVHRFFHENGYYW 159



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>SYNJ1_HUMAN (O43426) Synaptojanin-1 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 1)
          Length = 1575

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 22   QDSPHLVLVLGGACGYSVPSPPSPPRGFLVPSPE 123
            Q SP   L   G  GYS   P  PPR  ++ +P+
Sbjct: 1176 QPSPQAGLAGPGPAGYSTARPTIPPRAGVISAPQ 1209



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>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor|
          Length = 1463

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 16/44 (36%), Positives = 17/44 (38%)
 Frame = -3

Query: 137  PASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSP 6
            PA      G   P G +G  G   P  PP  R   GE    GSP
Sbjct: 1134 PAGPRGPVGPHGPPGKDGSSGHPGPIGPPGPRGNRGERGSEGSP 1177



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>V06_BPT7 (P03778) Protein 0.6B [Contains: Protein 0.6A]|
          Length = 111

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 286 PSGSWFLFNRRVHRFFRNDGYVWQKKKMGRAGTNPMSTLR 405
           P+G+ +  NRR+ R +R +    +K K GR G +    L+
Sbjct: 62  PNGTLYAANRRIVRTWRENNLERRKDKRGRRGIDERKRLK 101



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>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor|
          Length = 1466

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 16/44 (36%), Positives = 17/44 (38%)
 Frame = -3

Query: 137  PASTNSGEGTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSP 6
            PA      G   P G +G  G   P  PP  R   GE    GSP
Sbjct: 1135 PAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSP 1178



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>CO9A1_RAT (P20850) Collagen alpha-1(IX) chain (Fragment)|
          Length = 325

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -3

Query: 125 NSGE-GTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSP 6
           N GE G + P G  G  G E P+ PP  R   GE    G P
Sbjct: 111 NPGEPGLRGPEGIRGLPGVEGPRGPPGPRGVQGEQGATGLP 151



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>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -3

Query: 122  SGE-GTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSP 6
            SGE G + P G  G  G   P  PP      GES   GSP
Sbjct: 968  SGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGSP 1007



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>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -3

Query: 122  SGE-GTKNPRGGEGGEGTEYPQAPPRTRTR*GES*MAGSP 6
            SGE G + P G  G  G   P  PP      GES   GSP
Sbjct: 968  SGEPGKQGPSGSSGERGPPGPMGPPGLAGPPGESGREGSP 1007


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,948,788
Number of Sequences: 219361
Number of extensions: 1148045
Number of successful extensions: 5393
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 4465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5368
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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