ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl53d11 |
|---|---|
| Clone Library Name | barley_pub |
>NU107_RAT (P52590) Nuclear pore complex protein Nup107 (Nucleoporin Nup107)| (107 kDa nucleoporin) (p105) Length = 926 Score = 34.3 bits (77), Expect = 0.16 Identities = 20/56 (35%), Positives = 26/56 (46%) Frame = +1 Query: 235 STTTMTMMIPHYPSRGRQPAGQPPRSRKAHRQISLMLGALKLRPRITRGMGLMALL 402 +TT + +IP PS RQP P RS H IS + G PR + G + L Sbjct: 44 TTTPRSQIIPRTPSSFRQPFTPPSRSLLRHPDISYIFGTEGRSPRHIQSSGYLGNL 99
>CHSA_EMENI (P30584) Chitin synthase A (EC 2.4.1.16) (Chitin-UDP| acetyl-glucosaminyl transferase A) (Class-II chitin synthase A) Length = 1013 Score = 33.1 bits (74), Expect = 0.36 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Frame = +3 Query: 279 RSSTSRPA-PSKQEGASANITYVRSPKAAASDHQRNGINGASRSPLPLKPQFTNSNPRP 452 R + SRPA P++ + +VR P AAAS ++R ING+ R P ++ S RP Sbjct: 62 RYTASRPASPARPWSPTRAADWVRPPSAAASYYERADINGSPRPGTP-SSRYGGSPRRP 119
>NU107_HUMAN (P57740) Nuclear pore complex protein Nup107 (Nucleoporin Nup107)| (107 kDa nucleoporin) Length = 925 Score = 32.7 bits (73), Expect = 0.46 Identities = 20/56 (35%), Positives = 25/56 (44%) Frame = +1 Query: 235 STTTMTMMIPHYPSRGRQPAGQPPRSRKAHRQISLMLGALKLRPRITRGMGLMALL 402 +TT +IP PS RQP RS IS +LG PR+T+ G L Sbjct: 44 NTTPRNQVIPRTPSSFRQPFTPTSRSLLRQPDISCILGTGGKSPRLTQSSGFFGNL 99
>CBP1_CAEEL (P34545) Protein cbp-1| Length = 2056 Score = 30.8 bits (68), Expect = 1.8 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = +3 Query: 288 TSRPAPSKQEGASANITYVRSPKAAASDHQRNGINGASRSPLPLKP-QFTNSNPRPSGY 461 T +PAPS G N+ +S + G+NG+ L + P Q +N++PRP Y Sbjct: 64 TPQPAPSNNGGF--NLQPGQSQPQQPPQNMGGGVNGSVLQELLMNPSQTSNNSPRPQAY 120
>YGY5_YEAST (P53071) Hypothetical 19.3 kDa protein in HAP2-ADE5,6 intergenic| region Length = 178 Score = 30.4 bits (67), Expect = 2.3 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%) Frame = +1 Query: 175 VYSIGHPATAGKQCLLSILHSTTTMTMMIPHYPSRG-----RQPAGQPP-RSRKAHRQIS 336 ++++G P TAG L SIL+ T ++ +P PSR R P PP H IS Sbjct: 45 IWALG-PHTAGPLLLFSILNCTPARSVTLPISPSRASISFTRMPLPTPPIEGLHEHLPIS 103 Query: 337 LMLGALKL 360 + G +++ Sbjct: 104 VNDGVMRV 111
>MTR1L_HUMAN (Q13585) Melatonin-related receptor (G protein-coupled receptor 50)| (H9) Length = 613 Score = 29.6 bits (65), Expect = 3.9 Identities = 12/47 (25%), Positives = 24/47 (51%) Frame = +3 Query: 321 ASANITYVRSPKAAASDHQRNGINGASRSPLPLKPQFTNSNPRPSGY 461 AS+N + +A H ++ + A+ P P+KP +++ P + Y Sbjct: 470 ASSNPKPITGHHVSAGSHSKSAFSAATSHPKPIKPATSHAEPTTADY 516
>H1A_CHITE (P40275) Histone H1A| Length = 232 Score = 28.9 bits (63), Expect = 6.7 Identities = 14/59 (23%), Positives = 23/59 (38%) Frame = +3 Query: 276 KRSSTSRPAPSKQEGASANITYVRSPKAAASDHQRNGINGASRSPLPLKPQFTNSNPRP 452 K + P P K T + PKAA + + + ++ P KP + P+P Sbjct: 131 KPKKAAAPKPKKAGEKKVKKTIAKKPKAATATKIKKPVAKTTKKPAAAKPAAKKAAPKP 189
>DLX2B_BRARE (Q98876) Homeobox protein Dlx2b (DLX-5) (Distal-less homeobox| protein 2b) Length = 276 Score = 28.9 bits (63), Expect = 6.7 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Frame = +3 Query: 306 SKQEGASANITYVRSPKAA----ASDHQRNGINGASRSPLPLKPQFTNSNP 446 S G N+ Y SPKA AS + G GAS SP P +P+ S P Sbjct: 65 SYHPGTVGNVHY--SPKAYDLGYASSYGAYGTYGASSSPTPTEPEKEESEP 113
>ANGP1_BOVIN (O18920) Angiopoietin-1 precursor (ANG-1) (Fragment)| Length = 481 Score = 28.5 bits (62), Expect = 8.7 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%) Frame = -1 Query: 377 LVIRGRSFR---APNISDICRCAFLLRGGW 297 L++ G F A N + +C+CA +L GGW Sbjct: 417 LILHGADFSTKDADNDNCMCKCALMLTGGW 446
>ANGP1_MOUSE (O08538) Angiopoietin-1 precursor (ANG-1)| Length = 498 Score = 28.5 bits (62), Expect = 8.7 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%) Frame = -1 Query: 377 LVIRGRSFR---APNISDICRCAFLLRGGW 297 L++ G F A N + +C+CA +L GGW Sbjct: 418 LILHGADFSTKDADNDNCMCKCALMLTGGW 447
>ANGP1_HUMAN (Q15389) Angiopoietin-1 precursor (ANG-1)| Length = 498 Score = 28.5 bits (62), Expect = 8.7 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%) Frame = -1 Query: 377 LVIRGRSFR---APNISDICRCAFLLRGGW 297 L++ G F A N + +C+CA +L GGW Sbjct: 418 LILHGADFSTKDADNDNCMCKCALMLTGGW 447
>ANGP1_RAT (O35460) Angiopoietin-1 precursor (ANG-1)| Length = 497 Score = 28.5 bits (62), Expect = 8.7 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%) Frame = -1 Query: 377 LVIRGRSFR---APNISDICRCAFLLRGGW 297 L++ G F A N + +C+CA +L GGW Sbjct: 417 LILHGADFSTKDADNDNCMCKCALMLTGGW 446
>ANGP1_CANFA (Q60FC1) Angiopoietin-1 precursor (ANG-1)| Length = 497 Score = 28.5 bits (62), Expect = 8.7 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%) Frame = -1 Query: 377 LVIRGRSFR---APNISDICRCAFLLRGGW 297 L++ G F A N + +C+CA +L GGW Sbjct: 417 LILHGADFSTKDADNDNCMCKCALMLTGGW 446 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,414,643 Number of Sequences: 219361 Number of extensions: 976937 Number of successful extensions: 2565 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2466 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2564 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
