ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl53d09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK103165.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 2e-46
2dbj|AK065600.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 2e-46
3ref|XM_507387.1| PREDICTED Oryza sativa (japonica cultivar-group... 190 3e-45
4ref|XM_506442.1| PREDICTED Oryza sativa (japonica cultivar-group... 190 3e-45
5gb|AY106593.1| Zea mays PCO101405 mRNA sequence 168 1e-38
6dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 145 1e-31
7dbj|AP004275.3| Oryza sativa (japonica cultivar-group) genomic D... 145 1e-31
8gb|AY106567.1| Zea mays PCO145843 mRNA sequence 105 1e-19
9ref|XM_470596.1| Oryza sativa (japonica cultivar-group), predic... 92 2e-15
10dbj|AK121902.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
11dbj|AK073496.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
12gb|AC090482.3| Genomic sequence for Oryza sativa, Nipponbare str... 72 2e-09
13dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
14gb|AC161790.1| Oryza sativa (japonica cultivar-group) chromosome... 72 2e-09
15gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 72 2e-09
16ref|NM_195830.1| Oryza sativa (japonica cultivar-group) putative... 70 7e-09
17gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 58 3e-05
18gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare str... 58 3e-05
19dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
20gb|AC105928.2| Oryza sativa (japonica cultivar-group) chromosome... 58 3e-05
21gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 42 1.5
22gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 42 1.5
23gb|AC117769.9| Mus musculus chromosome 19, clone RP24-511E21, co... 42 1.5
24emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.5
25dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
26ref|XM_574658.1| PREDICTED: Rattus norvegicus similar to RIKEN c... 42 1.5
27ref|NM_105609.2| Arabidopsis thaliana metal ion binding AT1G6942... 40 6.1
28ref|XM_466771.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.1
29emb|AL591403.10| Human DNA sequence from clone RP11-108G8 on chr... 40 6.1
30emb|AL354956.13| Human DNA sequence from clone RP5-1113E3 on chr... 40 6.1
31emb|AL117382.28|HSJ881L22 Human DNA sequence from clone RP5-881L... 40 6.1
32gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 6.1
33emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete ... 40 6.1
34emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete ... 40 6.1
35emb|BX640429.1| Bordetella parapertussis strain 12822, complete ... 40 6.1
36emb|BX640426.1| Bordetella parapertussis strain 12822, complete ... 40 6.1
37emb|BX640414.1| Bordetella pertussis strain Tohama I, complete g... 40 6.1
38gb|AY052571.1| Phytophthora infestans endopolygalacturonase mRNA... 40 6.1
39gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 6.1
40dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
41dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
42dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
43gb|BT004122.1| Arabidopsis thaliana clone RAFL15-19-G24 (R20680)... 40 6.1
44gb|AY029260.1| Hordeum vulgare beta-D-xylosidase mRNA, complete cds 40 6.1
45dbj|AP004994.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
46dbj|AP003980.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
47dbj|AP004083.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
48gb|AY697926.1| Phytophthora parasitica endopolygalacturonase (pp... 40 6.1
49gb|AF017685.1|AF017685 Oryza australiensis internal transcribed ... 40 6.1
50gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
51emb|AL731740.4|CNS08C7P Oryza sativa chromosome 12, . BAC OSJNBb... 40 6.1 
>dbj|AK103165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121E03, full
           insert sequence
          Length = 2415

 Score =  194 bits (98), Expect = 2e-46
 Identities = 143/158 (90%)
 Strand = Plus / Plus

                                                                       
Query: 225 atgaggcggcatgggtggcagctcccttaccaccctctccaggtggtcgccgtgtccgtg 284
           ||||||||||||||||||||||| || || ||||||||||||||||| ||||||||||||
Sbjct: 233 atgaggcggcatgggtggcagcttccctatcaccctctccaggtggtggccgtgtccgtg 292

                                                                       
Query: 285 ttcttggcgctggcgttcgccttctacgtcttcttcgcgcccttcgttgggaggaaggtc 344
           |||||||||||||||||||| |||||||| |||||||| || ||||| |||| |||||| 
Sbjct: 293 ttcttggcgctggcgttcgcgttctacgtgttcttcgccccgttcgtcgggaagaaggtg 352

                                                 
Query: 345 ttccaggatgccgccgtggggctctacactcctctggt 382
           |||||||| |  ||||||||||||||||| ||||||||
Sbjct: 353 ttccaggacgtggccgtggggctctacacgcctctggt 390
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>dbj|AK065600.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013030I07, full
           insert sequence
          Length = 2415

 Score =  194 bits (98), Expect = 2e-46
 Identities = 143/158 (90%)
 Strand = Plus / Plus

                                                                       
Query: 225 atgaggcggcatgggtggcagctcccttaccaccctctccaggtggtcgccgtgtccgtg 284
           ||||||||||||||||||||||| || || ||||||||||||||||| ||||||||||||
Sbjct: 233 atgaggcggcatgggtggcagcttccctatcaccctctccaggtggtggccgtgtccgtg 292

                                                                       
Query: 285 ttcttggcgctggcgttcgccttctacgtcttcttcgcgcccttcgttgggaggaaggtc 344
           |||||||||||||||||||| |||||||| |||||||| || ||||| |||| |||||| 
Sbjct: 293 ttcttggcgctggcgttcgcgttctacgtgttcttcgccccgttcgtcgggaagaaggtg 352

                                                 
Query: 345 ttccaggatgccgccgtggggctctacactcctctggt 382
           |||||||| |  ||||||||||||||||| ||||||||
Sbjct: 353 ttccaggacgtggccgtggggctctacacgcctctggt 390
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>ref|XM_507387.1| PREDICTED Oryza sativa (japonica cultivar-group), P0453E05.104
           patrial mRNA
          Length = 388

 Score =  190 bits (96), Expect = 3e-45
 Identities = 141/156 (90%)
 Strand = Plus / Plus

                                                                       
Query: 225 atgaggcggcatgggtggcagctcccttaccaccctctccaggtggtcgccgtgtccgtg 284
           ||||||||||||||||||||||| || || ||||||||||||||||| ||||||||||||
Sbjct: 233 atgaggcggcatgggtggcagcttccctatcaccctctccaggtggtggccgtgtccgtg 292

                                                                       
Query: 285 ttcttggcgctggcgttcgccttctacgtcttcttcgcgcccttcgttgggaggaaggtc 344
           |||||||||||||||||||| |||||||| |||||||| || ||||| |||| |||||| 
Sbjct: 293 ttcttggcgctggcgttcgcgttctacgtgttcttcgccccgttcgtcgggaagaaggtg 352

                                               
Query: 345 ttccaggatgccgccgtggggctctacactcctctg 380
           |||||||| |  ||||||||||||||||| ||||||
Sbjct: 353 ttccaggacgtggccgtggggctctacacgcctctg 388
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>ref|XM_506442.1| PREDICTED Oryza sativa (japonica cultivar-group), P0453E05.104
           patrial mRNA
          Length = 388

 Score =  190 bits (96), Expect = 3e-45
 Identities = 141/156 (90%)
 Strand = Plus / Plus

                                                                       
Query: 225 atgaggcggcatgggtggcagctcccttaccaccctctccaggtggtcgccgtgtccgtg 284
           ||||||||||||||||||||||| || || ||||||||||||||||| ||||||||||||
Sbjct: 233 atgaggcggcatgggtggcagcttccctatcaccctctccaggtggtggccgtgtccgtg 292

                                                                       
Query: 285 ttcttggcgctggcgttcgccttctacgtcttcttcgcgcccttcgttgggaggaaggtc 344
           |||||||||||||||||||| |||||||| |||||||| || ||||| |||| |||||| 
Sbjct: 293 ttcttggcgctggcgttcgcgttctacgtgttcttcgccccgttcgtcgggaagaaggtg 352

                                               
Query: 345 ttccaggatgccgccgtggggctctacactcctctg 380
           |||||||| |  ||||||||||||||||| ||||||
Sbjct: 353 ttccaggacgtggccgtggggctctacacgcctctg 388
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>gb|AY106593.1| Zea mays PCO101405 mRNA sequence
          Length = 451

 Score =  168 bits (85), Expect = 1e-38
 Identities = 115/125 (92%)
 Strand = Plus / Plus

                                                                       
Query: 225 atgaggcggcatgggtggcagctcccttaccaccctctccaggtggtcgccgtgtccgtg 284
           |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| 
Sbjct: 327 atgaggcggcatgggtggcagctcccgtaccaccctctccaggtggtggccgtgtccgtc 386

                                                                       
Query: 285 ttcttggcgctggcgttcgccttctacgtcttcttcgcgcccttcgttgggaggaaggtc 344
           ||| |||||||||||||||| ||||||||||||||||| |||||||| || ||||| || 
Sbjct: 387 ttcctggcgctggcgttcgcgttctacgtcttcttcgcacccttcgtcggcaggaaagtg 446

                
Query: 345 ttcca 349
           |||||
Sbjct: 447 ttcca 451
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  145 bits (73), Expect = 1e-31
 Identities = 109/121 (90%)
 Strand = Plus / Minus

                                                                            
Query: 264      caggtggtcgccgtgtccgtgttcttggcgctggcgttcgccttctacgtcttcttcgcg 323
                |||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| 
Sbjct: 24203929 caggtggtggccgtgtccgtgttcttggcgctggcgttcgcgttctacgtgttcttcgcc 24203870

                                                                            
Query: 324      cccttcgttgggaggaaggtcttccaggatgccgccgtggggctctacactcctctggta 383
                || ||||| |||| |||||| |||||||| |  ||||||||||||||||| |||||||||
Sbjct: 24203869 ccgttcgtcgggaagaaggtgttccaggacgtggccgtggggctctacacgcctctggta 24203810

                 
Query: 384      a 384
                |
Sbjct: 24203809 a 24203809



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 42/45 (93%)
 Strand = Plus / Minus

                                                             
Query: 225      atgaggcggcatgggtggcagctcccttaccaccctctccaggtg 269
                ||||||||||||||||||||||| || || |||||||||||||||
Sbjct: 24204074 atgaggcggcatgggtggcagcttccctatcaccctctccaggtg 24204030
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>dbj|AP004275.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0453E05
          Length = 137364

 Score =  145 bits (73), Expect = 1e-31
 Identities = 109/121 (90%)
 Strand = Plus / Minus

                                                                         
Query: 264   caggtggtcgccgtgtccgtgttcttggcgctggcgttcgccttctacgtcttcttcgcg 323
             |||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| 
Sbjct: 15480 caggtggtggccgtgtccgtgttcttggcgctggcgttcgcgttctacgtgttcttcgcc 15421

                                                                         
Query: 324   cccttcgttgggaggaaggtcttccaggatgccgccgtggggctctacactcctctggta 383
             || ||||| |||| |||||| |||||||| |  ||||||||||||||||| |||||||||
Sbjct: 15420 ccgttcgtcgggaagaaggtgttccaggacgtggccgtggggctctacacgcctctggta 15361

              
Query: 384   a 384
             |
Sbjct: 15360 a 15360



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 42/45 (93%)
 Strand = Plus / Minus

                                                          
Query: 225   atgaggcggcatgggtggcagctcccttaccaccctctccaggtg 269
             ||||||||||||||||||||||| || || |||||||||||||||
Sbjct: 15625 atgaggcggcatgggtggcagcttccctatcaccctctccaggtg 15581
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>gb|AY106567.1| Zea mays PCO145843 mRNA sequence
          Length = 696

 Score =  105 bits (53), Expect = 1e-19
 Identities = 95/109 (87%)
 Strand = Plus / Plus

                                                                       
Query: 233 gcatgggtggcagctcccttaccaccctctccaggtggtcgccgtgtccgtgttcttggc 292
           ||||||||||||||| || |||||||||||||||||||| ||  |  ||||||||| |||
Sbjct: 260 gcatgggtggcagctgccgtaccaccctctccaggtggttgcgatagccgtgttctcggc 319

                                                            
Query: 293 gctggcgttcgccttctacgtcttcttcgcgcccttcgttgggaggaag 341
            |||| ||||||||||||||||||||||| ||| ||||| |||| ||||
Sbjct: 320 actggggttcgccttctacgtcttcttcgtgccgttcgtggggacgaag 368
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>ref|XM_470596.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1761

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 94/110 (85%)
 Strand = Plus / Plus

                                                                       
Query: 233 gcatgggtggcagctcccttaccaccctctccaggtggtcgccgtgtccgtgttcttggc 292
           ||||||||||||||| |||||||| |||||||||||||| ||  |  | |||||||||||
Sbjct: 9   gcatgggtggcagctgccttaccatcctctccaggtggtggcgatagcggtgttcttggc 68

                                                             
Query: 293 gctggcgttcgccttctacgtcttcttcgcgcccttcgttgggaggaagg 342
             |||  || ||||||||||||||||||| ||| ||||| ||||||||||
Sbjct: 69  attgggatttgccttctacgtcttcttcgtgccgttcgtggggaggaagg 118
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>dbj|AK121902.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105H03, full
           insert sequence
          Length = 2424

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 94/110 (85%)
 Strand = Plus / Plus

                                                                       
Query: 233 gcatgggtggcagctcccttaccaccctctccaggtggtcgccgtgtccgtgttcttggc 292
           ||||||||||||||| |||||||| |||||||||||||| ||  |  | |||||||||||
Sbjct: 313 gcatgggtggcagctgccttaccatcctctccaggtggtggcgatagcggtgttcttggc 372

                                                             
Query: 293 gctggcgttcgccttctacgtcttcttcgcgcccttcgttgggaggaagg 342
             |||  || ||||||||||||||||||| ||| ||||| ||||||||||
Sbjct: 373 attgggatttgccttctacgtcttcttcgtgccgttcgtggggaggaagg 422
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>dbj|AK073496.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046O11, full
           insert sequence
          Length = 2416

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Plus

                                                              
Query: 221 ggcgatgaggcggcatgggtggcagctcccttaccaccctctccaggtggt 271
           |||||||||| |||||||||||||||| |||||||||||||| ||||||||
Sbjct: 332 ggcgatgaggaggcatgggtggcagctaccttaccaccctcttcaggtggt 382
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>gb|AC090482.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0015I18, from chromosome 10, complete sequence
          Length = 161479

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                             
Query: 221   ggcgatgaggcggcatgggtggcagctcccttaccaccctctccaggt 268
             |||||||||| |||||||||||||||| |||||||||||||| |||||
Sbjct: 71674 ggcgatgaggaggcatgggtggcagctaccttaccaccctcttcaggt 71627
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                               
Query: 221     ggcgatgaggcggcatgggtggcagctcccttaccaccctctccaggt 268
               |||||||||| |||||||||||||||| |||||||||||||| |||||
Sbjct: 9294743 ggcgatgaggaggcatgggtggcagctaccttaccaccctcttcaggt 9294790
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>gb|AC161790.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0011F12, complete sequence
          Length = 122262

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                             
Query: 221   ggcgatgaggcggcatgggtggcagctcccttaccaccctctccaggt 268
             |||||||||| |||||||||||||||| |||||||||||||| |||||
Sbjct: 12586 ggcgatgaggaggcatgggtggcagctaccttaccaccctcttcaggt 12633
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                               
Query: 221     ggcgatgaggcggcatgggtggcagctcccttaccaccctctccaggt 268
               |||||||||| |||||||||||||||| |||||||||||||| |||||
Sbjct: 9299882 ggcgatgaggaggcatgggtggcagctaccttaccaccctcttcaggt 9299929
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>ref|NM_195830.1| Oryza sativa (japonica cultivar-group) putative DHHC-type zinc
           finger protein (OSJNBa0015I18.16), mRNA
          Length = 1770

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                          
Query: 225 atgaggcggcatgggtggcagctcccttaccaccctctccaggtggt 271
           |||||| |||||||||||||||| |||||||||||||| ||||||||
Sbjct: 1   atgaggaggcatgggtggcagctaccttaccaccctcttcaggtggt 47
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                           
Query: 282     gtgttcttggcgctggcgttcgccttctacgtcttcttcgcgcccttcgttgggaggaag 341
               |||||||||||  |||  || ||||||||||||||||||| ||| ||||| |||||||||
Sbjct: 5682829 gtgttcttggcattgggatttgccttctacgtcttcttcgtgccgttcgtggggaggaag 5682770

                
Query: 342     g 342
               |
Sbjct: 5682769 g 5682769



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                   
Query: 233     gcatgggtggcagctcccttaccaccctctccaggt 268
               ||||||||||||||| |||||||| |||||||||||
Sbjct: 5682978 gcatgggtggcagctgccttaccatcctctccaggt 5682943
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>gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0021B21, from chromosome 3, complete sequence
          Length = 166777

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                          
Query: 282    gtgttcttggcgctggcgttcgccttctacgtcttcttcgcgcccttcgttgggaggaag 341
              |||||||||||  |||  || ||||||||||||||||||| ||| ||||| |||||||||
Sbjct: 148342 gtgttcttggcattgggatttgccttctacgtcttcttcgtgccgttcgtggggaggaag 148401

               
Query: 342    g 342
              |
Sbjct: 148402 g 148402



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                  
Query: 233    gcatgggtggcagctcccttaccaccctctccaggt 268
              ||||||||||||||| |||||||| |||||||||||
Sbjct: 148193 gcatgggtggcagctgccttaccatcctctccaggt 148228
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                           
Query: 282     gtgttcttggcgctggcgttcgccttctacgtcttcttcgcgcccttcgttgggaggaag 341
               |||||||||||  |||  || ||||||||||||||||||| ||| ||||| |||||||||
Sbjct: 5682042 gtgttcttggcattgggatttgccttctacgtcttcttcgtgccgttcgtggggaggaag 5681983

                
Query: 342     g 342
               |
Sbjct: 5681982 g 5681982



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                   
Query: 233     gcatgggtggcagctcccttaccaccctctccaggt 268
               ||||||||||||||| |||||||| |||||||||||
Sbjct: 5682191 gcatgggtggcagctgccttaccatcctctccaggt 5682156
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>gb|AC105928.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0014O06,
              complete sequence
          Length = 168031

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                          
Query: 282    gtgttcttggcgctggcgttcgccttctacgtcttcttcgcgcccttcgttgggaggaag 341
              |||||||||||  |||  || ||||||||||||||||||| ||| ||||| |||||||||
Sbjct: 146528 gtgttcttggcattgggatttgccttctacgtcttcttcgtgccgttcgtggggaggaag 146469

               
Query: 342    g 342
              |
Sbjct: 146468 g 146468



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                  
Query: 233    gcatgggtggcagctcccttaccaccctctccaggt 268
              ||||||||||||||| |||||||| |||||||||||
Sbjct: 146677 gcatgggtggcagctgccttaccatcctctccaggt 146642
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 49      gcgccggccgccggccggccg 69
               |||||||||||||||||||||
Sbjct: 3238837 gcgccggccgccggccggccg 3238857
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 49     gcgccggccgccggccggccg 69
              |||||||||||||||||||||
Sbjct: 697173 gcgccggccgccggccggccg 697193
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>gb|AC117769.9| Mus musculus chromosome 19, clone RP24-511E21, complete sequence
          Length = 218248

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 55    gccgccggccggccgcgcgac 75
             |||||||||||||||||||||
Sbjct: 53769 gccgccggccggccgcgcgac 53749
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 49     gcgccggccgccggccggccg 69
              |||||||||||||||||||||
Sbjct: 505800 gcgccggccgccggccggccg 505820
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 291      gcgctggcgttcgccttctac 311
                |||||||||||||||||||||
Sbjct: 18893634 gcgctggcgttcgccttctac 18893614
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>ref|XM_574658.1| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 0610009F02
           (LOC499348), mRNA
          Length = 2016

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 55  gccgccggccggccgcgcgac 75
           |||||||||||||||||||||
Sbjct: 344 gccgccggccggccgcgcgac 364
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>ref|NM_105609.2| Arabidopsis thaliana metal ion binding AT1G69420 transcript variant
           AT1G69420.1 mRNA, complete cds
          Length = 2314

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 86/108 (79%)
 Strand = Plus / Plus

                                                                       
Query: 234 catgggtggcagctcccttaccaccctctccaggtggtcgccgtgtccgtgttcttggcg 293
           ||||| |||||||| || ||||| ||||| |||||||| || ||  | ||||||||||| 
Sbjct: 362 catggatggcagcttccataccatcctcttcaggtggtggctgttgctgtgttcttggct 421

                                                           
Query: 294 ctggcgttcgccttctacgtcttcttcgcgcccttcgttgggaggaag 341
            | | ||| || ||||| |||||||| || || || ||||||| ||||
Sbjct: 422 ttagggtttgctttctatgtcttctttgctccatttgttgggaagaag 469
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>ref|XM_466771.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 777

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  gcgccggccgccggccggcc 68
           ||||||||||||||||||||
Sbjct: 407 gcgccggccgccggccggcc 388
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>emb|AL591403.10| Human DNA sequence from clone RP11-108G8 on chromosome 1 Contains
            part of the PEX14 gene for peroxisomal biogenesis factor
            14, complete sequence
          Length = 97687

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 99   ccctttctccttcccccact 118
            ||||||||||||||||||||
Sbjct: 1336 ccctttctccttcccccact 1355
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>emb|AL354956.13| Human DNA sequence from clone RP5-1113E3 on chromosome 1p36.21-36.33
             Contains the 3' end of the CORT gene for cortistatin, a
             novel gene, the DFFA gene for DNA fragmentation factor
             45kDa alpha polypeptide and the 5' end of the PEX14 gene
             for peroxisomal biogenesis factor 14, complete sequence
          Length = 58039

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    ccctttctccttcccccact 118
             ||||||||||||||||||||
Sbjct: 57375 ccctttctccttcccccact 57394
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>emb|AL117382.28|HSJ881L22 Human DNA sequence from clone RP5-881L22 on chromosome 20 Contains the 3'
              end of the GDAP1L1 gene for ganglioside-induced
              differentiation-associated protein 1-like 1, the R3HDML
              gene for R3HDML domain containing-like, the C20orf142 gene,
              three novel genes, the 5' end of one variant of the HNF4A
              gene for hepatocyte nuclear factor 4 and two CpG islands,
              complete sequence
          Length = 131841

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 239    gtggcagctcccttaccacc 258
              ||||||||||||||||||||
Sbjct: 128720 gtggcagctcccttaccacc 128739
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 203    gctggttgtcaggggcgagg 222
              ||||||||||||||||||||
Sbjct: 810172 gctggttgtcaggggcgagg 810191
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>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16
          Length = 346274

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 46     catgcgccggccgccggccggccgcgcg 73
              ||||||||||| |||||||||| |||||
Sbjct: 332605 catgcgccggcggccggccggcagcgcg 332632
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>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16
          Length = 349497

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 51     gccggccgccggccggccgcgcga 74
              |||||||||||||| |||||||||
Sbjct: 315906 gccggccgccggcccgccgcgcga 315929
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>emb|BX640429.1| Bordetella parapertussis strain 12822, complete genome; segment 7/14
          Length = 344321

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 46    catgcgccggccgccggccggccgcgcg 73
             ||||||||||| |||||||||| |||||
Sbjct: 91992 catgcgccggcggccggccggcagcgcg 92019
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>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14
          Length = 348866

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 51    gccggccgccggccggccgcgcga 74
             |||||||||||||| |||||||||
Sbjct: 79701 gccggccgccggcccgccgcgcga 79724
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>emb|BX640414.1| Bordetella pertussis strain Tohama I, complete genome; segment 4/12
          Length = 343243

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 46     catgcgccggccgccggccggccgcgcg 73
              ||||||||||| |||||||||| |||||
Sbjct: 107819 catgcgccggcggccggccggcagcgcg 107846
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>gb|AY052571.1| Phytophthora infestans endopolygalacturonase mRNA, complete cds
          Length = 1125

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 278 gtccgtgttcttggcgctggcgtt 301
           ||||||||||||||||||| ||||
Sbjct: 627 gtccgtgttcttggcgctgccgtt 604
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 289     tggcgctggcgttcgccttc 308
               ||||||||||||||||||||
Sbjct: 2800958 tggcgctggcgttcgccttc 2800977
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 49      gcgccggccgccggccggcc 68
               ||||||||||||||||||||
Sbjct: 6924862 gcgccggccgccggccggcc 6924843
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 49      gcgccggccgccggccggcc 68
               ||||||||||||||||||||
Sbjct: 7289760 gcgccggccgccggccggcc 7289741
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 49       gcgccggccgccggccggcc 68
                ||||||||||||||||||||
Sbjct: 24597378 gcgccggccgccggccggcc 24597397
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>gb|BT004122.1| Arabidopsis thaliana clone RAFL15-19-G24 (R20680) At1g69420 mRNA,
           complete sequence
          Length = 2471

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 86/108 (79%)
 Strand = Plus / Plus

                                                                       
Query: 234 catgggtggcagctcccttaccaccctctccaggtggtcgccgtgtccgtgttcttggcg 293
           ||||| |||||||| || ||||| ||||| |||||||| || ||  | ||||||||||| 
Sbjct: 362 catggatggcagcttccataccatcctcttcaggtggtggctgttgctgtgttcttggct 421

                                                           
Query: 294 ctggcgttcgccttctacgtcttcttcgcgcccttcgttgggaggaag 341
            | | ||| || ||||| |||||||| || || || ||||||| ||||
Sbjct: 422 ttagggtttgctttctatgtcttctttgctccatttgttgggaagaag 469
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>gb|AY029260.1| Hordeum vulgare beta-D-xylosidase mRNA, complete cds
          Length = 2546

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 50   cgccggccgccggccggccg 69
            ||||||||||||||||||||
Sbjct: 2401 cgccggccgccggccggccg 2382
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>dbj|AP004994.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0052G07
          Length = 156207

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     gcgccggccgccggccggcc 68
              ||||||||||||||||||||
Sbjct: 124764 gcgccggccgccggccggcc 124745
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>dbj|AP003980.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1014_H03
          Length = 132696

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     gcgccggccgccggccggcc 68
              ||||||||||||||||||||
Sbjct: 111479 gcgccggccgccggccggcc 111498
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>dbj|AP004083.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1212_C01
          Length = 124548

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    gcgccggccgccggccggcc 68
             ||||||||||||||||||||
Sbjct: 41927 gcgccggccgccggccggcc 41946
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>gb|AY697926.1| Phytophthora parasitica endopolygalacturonase (pppg1) mRNA,
           complete cds
          Length = 1308

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 278 gtccgtgttcttggcgctggcgtt 301
           ||||||||||||||||||| ||||
Sbjct: 691 gtccgtgttcttggcgctgccgtt 668
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>gb|AF017685.1|AF017685 Oryza australiensis internal transcribed spacer 1, complete
           sequence
          Length = 203

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 49  gcgccggccgccggccggcc 68
           ||||||||||||||||||||
Sbjct: 174 gcgccggccgccggccggcc 155
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 49      gcgccggccgccggccggcc 68
               ||||||||||||||||||||
Sbjct: 6924741 gcgccggccgccggccggcc 6924722
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>emb|AL731740.4|CNS08C7P Oryza sativa chromosome 12, . BAC OSJNBb0001P19 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 144563

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    gcgccggccgccggccggcc 68
             ||||||||||||||||||||
Sbjct: 37176 gcgccggccgccggccggcc 37195


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,103,352
Number of Sequences: 3902068
Number of extensions: 3103352
Number of successful extensions: 75172
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74176
Number of HSP's gapped (non-prelim): 993
length of query: 453
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 431
effective length of database: 17,147,199,772
effective search space: 7390443101732
effective search space used: 7390443101732
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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