Clone Name | bastl53d06 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 174 bits (88), Expect = 2e-40 Identities = 178/208 (85%) Strand = Plus / Plus Query: 215 gatgagtgtggtggggtttgatctgggcaatgagagctgcattgtgggggtggcccggca 274 |||||| ||||||||||| || | |||||||||||| |||| || | ||||| ||||| Sbjct: 4820085 gatgagcgtggtggggttcgacgtcggcaatgagagcggcatcgtcgccgtggcgcggca 4820144 Query: 275 gcgtggaatcgacgtggtcctcaatgaggagtccaagcgggagacacccgctattgtctg 334 ||| || ||||||||||| ||||| |||||||| ||||||||||| ||||| | ||||| Sbjct: 4820145 gcggggcatcgacgtggtgctcaacgaggagtcgaagcgggagacccccgccgtcgtctg 4820204 Query: 335 ctttggcgacaagcagcgtttcatcggcaccgcaggcgccgccaactccaccatgaaccc 394 ||| |||||||||||||| |||||||||||||| || ||||| ||||||||||||||| Sbjct: 4820205 cttcggcgacaagcagcgcttcatcggcaccgcgggggccgcgtcctccaccatgaaccc 4820264 Query: 395 caagaactccatctcccagatcaagcgc 422 | ||||||| ||||||||||||||||| Sbjct: 4820265 taggaactccgtctcccagatcaagcgc 4820292
>dbj|AK122040.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033113E02, full insert sequence Length = 3137 Score = 174 bits (88), Expect = 2e-40 Identities = 178/208 (85%) Strand = Plus / Plus Query: 215 gatgagtgtggtggggtttgatctgggcaatgagagctgcattgtgggggtggcccggca 274 |||||| ||||||||||| || | |||||||||||| |||| || | ||||| ||||| Sbjct: 183 gatgagcgtggtggggttcgacgtcggcaatgagagcggcatcgtcgccgtggcgcggca 242 Query: 275 gcgtggaatcgacgtggtcctcaatgaggagtccaagcgggagacacccgctattgtctg 334 ||| || ||||||||||| ||||| |||||||| ||||||||||| ||||| | ||||| Sbjct: 243 gcggggcatcgacgtggtgctcaacgaggagtcgaagcgggagacccccgccgtcgtctg 302 Query: 335 ctttggcgacaagcagcgtttcatcggcaccgcaggcgccgccaactccaccatgaaccc 394 ||| |||||||||||||| |||||||||||||| || ||||| ||||||||||||||| Sbjct: 303 cttcggcgacaagcagcgcttcatcggcaccgcgggggccgcgtcctccaccatgaaccc 362 Query: 395 caagaactccatctcccagatcaagcgc 422 | ||||||| ||||||||||||||||| Sbjct: 363 taggaactccgtctcccagatcaagcgc 390
>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11, complete sequence Length = 187956 Score = 174 bits (88), Expect = 2e-40 Identities = 178/208 (85%) Strand = Plus / Plus Query: 215 gatgagtgtggtggggtttgatctgggcaatgagagctgcattgtgggggtggcccggca 274 |||||| ||||||||||| || | |||||||||||| |||| || | ||||| ||||| Sbjct: 92493 gatgagcgtggtggggttcgacgtcggcaatgagagcggcatcgtcgccgtggcgcggca 92552 Query: 275 gcgtggaatcgacgtggtcctcaatgaggagtccaagcgggagacacccgctattgtctg 334 ||| || ||||||||||| ||||| |||||||| ||||||||||| ||||| | ||||| Sbjct: 92553 gcggggcatcgacgtggtgctcaacgaggagtcgaagcgggagacccccgccgtcgtctg 92612 Query: 335 ctttggcgacaagcagcgtttcatcggcaccgcaggcgccgccaactccaccatgaaccc 394 ||| |||||||||||||| |||||||||||||| || ||||| ||||||||||||||| Sbjct: 92613 cttcggcgacaagcagcgcttcatcggcaccgcgggggccgcgtcctccaccatgaaccc 92672 Query: 395 caagaactccatctcccagatcaagcgc 422 | ||||||| ||||||||||||||||| Sbjct: 92673 taggaactccgtctcccagatcaagcgc 92700
>ref|NM_189556.2| Oryza sativa (japonica cultivar-group), mRNA Length = 3139 Score = 161 bits (81), Expect = 3e-36 Identities = 224/272 (82%) Strand = Plus / Plus Query: 214 agatgagtgtggtggggtttgatctgggcaatgagagctgcattgtgggggtggcccggc 273 ||||||| |||||||| |||||||| || ||||||||||||||||||| || || |||| Sbjct: 213 agatgagcgtggtgggctttgatctagggaatgagagctgcattgtggccgtcgcgcggc 272 Query: 274 agcgtggaatcgacgtggtcctcaatgaggagtccaagcgggagacacccgctattgtct 333 |||| || || || ||||||||||| |||||||| ||||||||||| || |||||||||| Sbjct: 273 agcgcggcattgatgtggtcctcaacgaggagtcgaagcgggagactccggctattgtct 332 Query: 334 gctttggcgacaagcagcgtttcatcggcaccgcaggcgccgccaactccaccatgaacc 393 |||| |||||||||||||| |||||||| || || ||||| || |||||| ||||||| Sbjct: 333 gcttcggcgacaagcagcggttcatcgggacagcgggcgctgcttcctccacgatgaacc 392 Query: 394 ccaagaactccatctcccagatcaagcgcttactgggacgcnagtttgctgatcctgagc 453 | ||||| || | || ||||||||||| | || || ||| ||| |||||||||||| Sbjct: 393 cgaagaattctgtttctcagatcaagcggctcctcgggcgcaagtactctgatcctgagc 452 Query: 454 tgcagaatgatattcagtccttcccgttccgt 485 | ||| ||||||| | ||||||| |||||| Sbjct: 453 tccagcgtgatattgcggccttccccttccgt 484
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 161 bits (81), Expect = 3e-36 Identities = 224/272 (82%) Strand = Plus / Plus Query: 214 agatgagtgtggtggggtttgatctgggcaatgagagctgcattgtgggggtggcccggc 273 ||||||| |||||||| |||||||| || ||||||||||||||||||| || || |||| Sbjct: 4253482 agatgagcgtggtgggctttgatctagggaatgagagctgcattgtggccgtcgcgcggc 4253541 Query: 274 agcgtggaatcgacgtggtcctcaatgaggagtccaagcgggagacacccgctattgtct 333 |||| || || || ||||||||||| |||||||| ||||||||||| || |||||||||| Sbjct: 4253542 agcgcggcattgatgtggtcctcaacgaggagtcgaagcgggagactccggctattgtct 4253601 Query: 334 gctttggcgacaagcagcgtttcatcggcaccgcaggcgccgccaactccaccatgaacc 393 |||| |||||||||||||| |||||||| || || ||||| || |||||| ||||||| Sbjct: 4253602 gcttcggcgacaagcagcggttcatcgggacagcgggcgctgcttcctccacgatgaacc 4253661 Query: 394 ccaagaactccatctcccagatcaagcgcttactgggacgcnagtttgctgatcctgagc 453 | ||||| || | || ||||||||||| | || || ||| ||| |||||||||||| Sbjct: 4253662 cgaagaattctgtttctcagatcaagcggctcctcgggcgcaagtactctgatcctgagc 4253721 Query: 454 tgcagaatgatattcagtccttcccgttccgt 485 | ||| ||||||| | ||||||| |||||| Sbjct: 4253722 tccagcgtgatattgcggccttccccttccgt 4253753
>dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1174_D05 Length = 128525 Score = 161 bits (81), Expect = 3e-36 Identities = 224/272 (82%) Strand = Plus / Plus Query: 214 agatgagtgtggtggggtttgatctgggcaatgagagctgcattgtgggggtggcccggc 273 ||||||| |||||||| |||||||| || ||||||||||||||||||| || || |||| Sbjct: 91449 agatgagcgtggtgggctttgatctagggaatgagagctgcattgtggccgtcgcgcggc 91508 Query: 274 agcgtggaatcgacgtggtcctcaatgaggagtccaagcgggagacacccgctattgtct 333 |||| || || || ||||||||||| |||||||| ||||||||||| || |||||||||| Sbjct: 91509 agcgcggcattgatgtggtcctcaacgaggagtcgaagcgggagactccggctattgtct 91568 Query: 334 gctttggcgacaagcagcgtttcatcggcaccgcaggcgccgccaactccaccatgaacc 393 |||| |||||||||||||| |||||||| || || ||||| || |||||| ||||||| Sbjct: 91569 gcttcggcgacaagcagcggttcatcgggacagcgggcgctgcttcctccacgatgaacc 91628 Query: 394 ccaagaactccatctcccagatcaagcgcttactgggacgcnagtttgctgatcctgagc 453 | ||||| || | || ||||||||||| | || || ||| ||| |||||||||||| Sbjct: 91629 cgaagaattctgtttctcagatcaagcggctcctcgggcgcaagtactctgatcctgagc 91688 Query: 454 tgcagaatgatattcagtccttcccgttccgt 485 | ||| ||||||| | ||||||| |||||| Sbjct: 91689 tccagcgtgatattgcggccttccccttccgt 91720
>dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0666G04 Length = 141983 Score = 161 bits (81), Expect = 3e-36 Identities = 224/272 (82%) Strand = Plus / Plus Query: 214 agatgagtgtggtggggtttgatctgggcaatgagagctgcattgtgggggtggcccggc 273 ||||||| |||||||| |||||||| || ||||||||||||||||||| || || |||| Sbjct: 33252 agatgagcgtggtgggctttgatctagggaatgagagctgcattgtggccgtcgcgcggc 33311 Query: 274 agcgtggaatcgacgtggtcctcaatgaggagtccaagcgggagacacccgctattgtct 333 |||| || || || ||||||||||| |||||||| ||||||||||| || |||||||||| Sbjct: 33312 agcgcggcattgatgtggtcctcaacgaggagtcgaagcgggagactccggctattgtct 33371 Query: 334 gctttggcgacaagcagcgtttcatcggcaccgcaggcgccgccaactccaccatgaacc 393 |||| |||||||||||||| |||||||| || || ||||| || |||||| ||||||| Sbjct: 33372 gcttcggcgacaagcagcggttcatcgggacagcgggcgctgcttcctccacgatgaacc 33431 Query: 394 ccaagaactccatctcccagatcaagcgcttactgggacgcnagtttgctgatcctgagc 453 | ||||| || | || ||||||||||| | || || ||| ||| |||||||||||| Sbjct: 33432 cgaagaattctgtttctcagatcaagcggctcctcgggcgcaagtactctgatcctgagc 33491 Query: 454 tgcagaatgatattcagtccttcccgttccgt 485 | ||| ||||||| | ||||||| |||||| Sbjct: 33492 tccagcgtgatattgcggccttccccttccgt 33523
>dbj|AK100676.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113C17, full insert sequence Length = 3139 Score = 161 bits (81), Expect = 3e-36 Identities = 224/272 (82%) Strand = Plus / Plus Query: 214 agatgagtgtggtggggtttgatctgggcaatgagagctgcattgtgggggtggcccggc 273 ||||||| |||||||| |||||||| || ||||||||||||||||||| || || |||| Sbjct: 213 agatgagcgtggtgggctttgatctagggaatgagagctgcattgtggccgtcgcgcggc 272 Query: 274 agcgtggaatcgacgtggtcctcaatgaggagtccaagcgggagacacccgctattgtct 333 |||| || || || ||||||||||| |||||||| ||||||||||| || |||||||||| Sbjct: 273 agcgcggcattgatgtggtcctcaacgaggagtcgaagcgggagactccggctattgtct 332 Query: 334 gctttggcgacaagcagcgtttcatcggcaccgcaggcgccgccaactccaccatgaacc 393 |||| |||||||||||||| |||||||| || || ||||| || |||||| ||||||| Sbjct: 333 gcttcggcgacaagcagcggttcatcgggacagcgggcgctgcttcctccacgatgaacc 392 Query: 394 ccaagaactccatctcccagatcaagcgcttactgggacgcnagtttgctgatcctgagc 453 | ||||| || | || ||||||||||| | || || ||| ||| |||||||||||| Sbjct: 393 cgaagaattctgtttctcagatcaagcggctcctcgggcgcaagtactctgatcctgagc 452 Query: 454 tgcagaatgatattcagtccttcccgttccgt 485 | ||| ||||||| | ||||||| |||||| Sbjct: 453 tccagcgtgatattgcggccttccccttccgt 484
>dbj|AK059244.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-G02, full insert sequence Length = 1164 Score = 161 bits (81), Expect = 3e-36 Identities = 224/272 (82%) Strand = Plus / Plus Query: 214 agatgagtgtggtggggtttgatctgggcaatgagagctgcattgtgggggtggcccggc 273 ||||||| |||||||| |||||||| || ||||||||||||||||||| || || |||| Sbjct: 159 agatgagcgtggtgggctttgatctagggaatgagagctgcattgtggccgtcgcgcggc 218 Query: 274 agcgtggaatcgacgtggtcctcaatgaggagtccaagcgggagacacccgctattgtct 333 |||| || || || ||||||||||| |||||||| ||||||||||| || |||||||||| Sbjct: 219 agcgcggcattgatgtggtcctcaacgaggagtcgaagcgggagactccggctattgtct 278 Query: 334 gctttggcgacaagcagcgtttcatcggcaccgcaggcgccgccaactccaccatgaacc 393 |||| |||||||||||||| |||||||| || || ||||| || |||||| ||||||| Sbjct: 279 gcttcggcgacaagcagcggttcatcgggacagcgggcgctgcttcctccacgatgaacc 338 Query: 394 ccaagaactccatctcccagatcaagcgcttactgggacgcnagtttgctgatcctgagc 453 | ||||| || | || ||||||||||| | || || ||| ||| |||||||||||| Sbjct: 339 cgaagaattctgtttctcagatcaagcggctcctcgggcgcaagtactctgatcctgagc 398 Query: 454 tgcagaatgatattcagtccttcccgttccgt 485 | ||| ||||||| | ||||||| |||||| Sbjct: 399 tccagcgtgatattgcggccttccccttccgt 430
>ref|NM_106642.3| Arabidopsis thaliana HSP91 AT1G79930 (HSP91) transcript variant AT1G79930.1 mRNA, complete cds Length = 2949 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 282 atcgacgtggtcctcaatgaggagtccaagcgggagacacccgctattgtctgctttggc 341 |||||||| || || ||||| |||||||| || ||||| || |||||||||||||| || Sbjct: 217 atcgacgtcgtgcttaatgatgagtccaatcgtgagactcctgctattgtctgcttcggt 276 Query: 342 gacaagcagcgtttcatcggcac 364 ||||||||||| ||||||||||| Sbjct: 277 gacaagcagcgcttcatcggcac 299
>ref|NM_001036228.1| Arabidopsis thaliana HSP91 AT1G79930 (HSP91) transcript variant AT1G79930.2 mRNA, complete cds Length = 3012 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 282 atcgacgtggtcctcaatgaggagtccaagcgggagacacccgctattgtctgctttggc 341 |||||||| || || ||||| |||||||| || ||||| || |||||||||||||| || Sbjct: 261 atcgacgtcgtgcttaatgatgagtccaatcgtgagactcctgctattgtctgcttcggt 320 Query: 342 gacaagcagcgtttcatcggcac 364 ||||||||||| ||||||||||| Sbjct: 321 gacaagcagcgcttcatcggcac 343
>gb|AY079015.1| Arabidopsis thaliana At1g79930/F19K16_11 mRNA, complete cds Length = 2798 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 282 atcgacgtggtcctcaatgaggagtccaagcgggagacacccgctattgtctgctttggc 341 |||||||| || || ||||| |||||||| || ||||| || |||||||||||||| || Sbjct: 217 atcgacgtcgtgcttaatgatgagtccaatcgtgagactcctgctattgtctgcttcggt 276 Query: 342 gacaagcagcgtttcatcggcac 364 ||||||||||| ||||||||||| Sbjct: 277 gacaagcagcgcttcatcggcac 299
>gb|AC011717.6|AC011717 Arabidopsis thaliana chromosome 1 BAC F19K16 genomic sequence, complete sequence Length = 111301 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 282 atcgacgtggtcctcaatgaggagtccaagcgggagacacccgctattgtctgctttggc 341 |||||||| || || ||||| |||||||| || ||||| || |||||||||||||| || Sbjct: 37179 atcgacgtcgtgcttaatgatgagtccaatcgtgagactcctgctattgtctgcttcggt 37238 Query: 342 gacaagcagcgtttcatcggcac 364 ||||||||||| ||||||||||| Sbjct: 37239 gacaagcagcgcttcatcggcac 37261 Score = 67.9 bits (34), Expect = 3e-08 Identities = 138/173 (79%) Strand = Plus / Plus Query: 282 atcgacgtggtcctcaatgaggagtccaagcgggagacacccgctattgtctgctttggc 341 |||||||| || || ||||| ||||| || || ||||| || ||||| || |||||||| Sbjct: 42022 atcgacgtcgtgcttaatgatgagtcaaatcgcgagactccggctatcgtttgctttggt 42081 Query: 342 gacaagcagcgtttcatcggcaccgcaggcgccgccaactccaccatgaaccccaagaac 401 ||||||||||| |||||||| || || || || || ||| ||||||||||| ||| Sbjct: 42082 gacaagcagcgcttcatcggtactgctggagctgcttctaccatgatgaaccccaaaaac 42141 Query: 402 tccatctcccagatcaagcgcttactgggacgcnagtttgctgatcctgagct 454 |||||||| || |||||||||||| | || ||| ||||| | || |||||||| Sbjct: 42142 tccatctcacaaatcaagcgcttaattggtcgccagttttccgaccctgagct 42194
>gb|BT002625.1| Arabidopsis thaliana At1g79930/F19K16_11 gene, complete cds Length = 2496 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 282 atcgacgtggtcctcaatgaggagtccaagcgggagacacccgctattgtctgctttggc 341 |||||||| || || ||||| |||||||| || ||||| || |||||||||||||| || Sbjct: 67 atcgacgtcgtgcttaatgatgagtccaatcgtgagactcctgctattgtctgcttcggt 126 Query: 342 gacaagcagcgtttcatcggcac 364 ||||||||||| ||||||||||| Sbjct: 127 gacaagcagcgcttcatcggcac 149
>gb|AC009322.1|AC009322 Arabidopsis thaliana chromosome I BAC F18B13 genomic sequence, complete sequence Length = 116905 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Minus Query: 282 atcgacgtggtcctcaatgaggagtccaagcgggagacacccgctattgtctgctttggc 341 |||||||| || || ||||| |||||||| || ||||| || |||||||||||||| || Sbjct: 3765 atcgacgtcgtgcttaatgatgagtccaatcgtgagactcctgctattgtctgcttcggt 3706 Query: 342 gacaagcagcgtttcatcggcac 364 ||||||||||| ||||||||||| Sbjct: 3705 gacaagcagcgcttcatcggcac 3683
>ref|NM_180653.1| Arabidopsis thaliana ATP binding AT1G79920 transcript variant AT1G79920.1 mRNA, complete cds Length = 2941 Score = 67.9 bits (34), Expect = 3e-08 Identities = 138/173 (79%) Strand = Plus / Plus Query: 282 atcgacgtggtcctcaatgaggagtccaagcgggagacacccgctattgtctgctttggc 341 |||||||| || || ||||| ||||| || || ||||| || ||||| || |||||||| Sbjct: 210 atcgacgtcgtgcttaatgatgagtcaaatcgcgagactccggctatcgtttgctttggt 269 Query: 342 gacaagcagcgtttcatcggcaccgcaggcgccgccaactccaccatgaaccccaagaac 401 ||||||||||| |||||||| || || || || || ||| ||||||||||| ||| Sbjct: 270 gacaagcagcgcttcatcggtactgctggagctgcttctaccatgatgaaccccaaaaac 329 Query: 402 tccatctcccagatcaagcgcttactgggacgcnagtttgctgatcctgagct 454 |||||||| || |||||||||||| | || ||| ||||| | || |||||||| Sbjct: 330 tccatctcacaaatcaagcgcttaattggtcgccagttttccgaccctgagct 382
>ref|NM_106641.3| Arabidopsis thaliana ATP binding AT1G79920 transcript variant AT1G79920.2 mRNA, complete cds Length = 2941 Score = 67.9 bits (34), Expect = 3e-08 Identities = 138/173 (79%) Strand = Plus / Plus Query: 282 atcgacgtggtcctcaatgaggagtccaagcgggagacacccgctattgtctgctttggc 341 |||||||| || || ||||| ||||| || || ||||| || ||||| || |||||||| Sbjct: 210 atcgacgtcgtgcttaatgatgagtcaaatcgcgagactccggctatcgtttgctttggt 269 Query: 342 gacaagcagcgtttcatcggcaccgcaggcgccgccaactccaccatgaaccccaagaac 401 ||||||||||| |||||||| || || || || || ||| ||||||||||| ||| Sbjct: 270 gacaagcagcgcttcatcggtactgctggagctgcttctaccatgatgaaccccaaaaac 329 Query: 402 tccatctcccagatcaagcgcttactgggacgcnagtttgctgatcctgagct 454 |||||||| || |||||||||||| | || ||| ||||| | || |||||||| Sbjct: 330 tccatctcacaaatcaagcgcttaattggtcgccagttttccgaccctgagct 382
>gb|BT000810.1| Arabidopsis thaliana At1g79920 mRNA sequence Length = 2952 Score = 67.9 bits (34), Expect = 3e-08 Identities = 138/173 (79%) Strand = Plus / Plus Query: 282 atcgacgtggtcctcaatgaggagtccaagcgggagacacccgctattgtctgctttggc 341 |||||||| || || ||||| ||||| || || ||||| || ||||| || |||||||| Sbjct: 203 atcgacgtcgtgcttaatgatgagtcaaatcgcgagactccggctatcgtttgctttggt 262 Query: 342 gacaagcagcgtttcatcggcaccgcaggcgccgccaactccaccatgaaccccaagaac 401 ||||||||||| |||||||| || || || || || ||| ||||||||||| ||| Sbjct: 263 gacaagcagcgcttcatcggtactgctggagctgcttctaccatgatgaaccccaaaaac 322 Query: 402 tccatctcccagatcaagcgcttactgggacgcnagtttgctgatcctgagct 454 |||||||| || |||||||||||| | || ||| ||||| | || |||||||| Sbjct: 323 tccatctcacaaatcaagcgcttaattggtcgccagttttccgaccctgagct 375
>emb|Z70314.1|ATHSP91 A.thaliana mRNA for heat-shock protein Length = 2923 Score = 67.9 bits (34), Expect = 3e-08 Identities = 138/173 (79%) Strand = Plus / Plus Query: 282 atcgacgtggtcctcaatgaggagtccaagcgggagacacccgctattgtctgctttggc 341 |||||||| || || ||||| |||||||| || ||||| || |||||||||||||| || Sbjct: 220 atcgacgtcgtgcttaatgatgagtccaatcgtgagacgcctgctattgtctgcttcggt 279 Query: 342 gacaagcagcgtttcatcggcaccgcaggcgccgccaactccaccatgaaccccaagaac 401 ||||| |||| ||||||||||| || || || || ||| ||||||||||| ||| Sbjct: 280 gacaacgagcgcttcatcggcactgctggagctgcttctaccatgatgaaccccaaaaac 339 Query: 402 tccatctcccagatcaagcgcttactgggacgcnagtttgctgatcctgagct 454 |||||||| || || ||||||||| | || ||| ||||| | || |||||||| Sbjct: 340 tccatctctcaaattaagcgcttaattggtcgccagttttccgaccctgagct 392
>gb|AY065177.1| Arabidopsis thaliana putative heat-shock protein (At1g79920; F19K16.12) mRNA, complete cds Length = 2850 Score = 67.9 bits (34), Expect = 3e-08 Identities = 138/173 (79%) Strand = Plus / Plus Query: 282 atcgacgtggtcctcaatgaggagtccaagcgggagacacccgctattgtctgctttggc 341 |||||||| || || ||||| ||||| || || ||||| || ||||| || |||||||| Sbjct: 210 atcgacgtcgtgcttaatgatgagtcaaatcgcgagactccggctatcgtttgctttggt 269 Query: 342 gacaagcagcgtttcatcggcaccgcaggcgccgccaactccaccatgaaccccaagaac 401 ||||||||||| |||||||| || || || || || ||| ||||||||||| ||| Sbjct: 270 gacaagcagcgcttcatcggtactgctggagctgcttctaccatgatgaaccccaaaaac 329 Query: 402 tccatctcccagatcaagcgcttactgggacgcnagtttgctgatcctgagct 454 |||||||| || |||||||||||| | || ||| ||||| | || |||||||| Sbjct: 330 tccatctcacaaatcaagcgcttaattggtcgccagttttccgaccctgagct 382
>emb|AL161557.2|ATCHRIV57 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 57 Length = 199577 Score = 48.1 bits (24), Expect = 0.027 Identities = 27/28 (96%) Strand = Plus / Minus Query: 380 ctccaccatgaaccccaagaactccatc 407 |||||||| ||||||||||||||||||| Sbjct: 89555 ctccaccacgaaccccaagaactccatc 89528 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 380 ctccaccatgaaccccaagaactcca 405 |||||||| ||||||||||||||||| Sbjct: 89489 ctccaccacgaaccccaagaactcca 89464 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 380 ctccaccatgaaccccaagaactcca 405 |||||||| ||||||||||||||||| Sbjct: 89456 ctccaccacgaaccccaagaactcca 89431
>emb|AL033545.2|ATF7K2 Arabidopsis thaliana DNA chromosome 4, BAC clone F7K2 (ESSA project) Length = 106702 Score = 48.1 bits (24), Expect = 0.027 Identities = 27/28 (96%) Strand = Plus / Minus Query: 380 ctccaccatgaaccccaagaactccatc 407 |||||||| ||||||||||||||||||| Sbjct: 40747 ctccaccacgaaccccaagaactccatc 40720 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 380 ctccaccatgaaccccaagaactcca 405 |||||||| ||||||||||||||||| Sbjct: 40681 ctccaccacgaaccccaagaactcca 40656 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 380 ctccaccatgaaccccaagaactcca 405 |||||||| ||||||||||||||||| Sbjct: 40648 ctccaccacgaaccccaagaactcca 40623
>emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genome; segment 11/16 Length = 349635 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 120 ctctggcaccggcaacggcctcctca 145 ||||||| |||||||||||||||||| Sbjct: 256544 ctctggctccggcaacggcctcctca 256569
>ref|XM_545469.2| PREDICTED: Canis familiaris similar to Tripartite motif protein 26 (Zinc finger protein 173) (Acid finger protein) (AFP) (RING finger protein 95) (LOC488347), mRNA Length = 1530 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 245 tgagagctgcattgtgggggtggcc 269 |||||||||||| |||||||||||| Sbjct: 1212 tgagagctgcatggtgggggtggcc 1236
>emb|AL049859.7|HSJ826A18 Human DNA sequence from clone RP5-826A18 on chromosome Xq23, complete sequence Length = 77913 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 226 tggggtttgatctgggcaatg 246 ||||||||||||||||||||| Sbjct: 52761 tggggtttgatctgggcaatg 52781
>gb|AC114267.2| Homo sapiens chromosome 19 clone LLNLR_222F11, complete sequence Length = 38629 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 401 ctccatctcccagatcaagcg 421 ||||||||||||||||||||| Sbjct: 8187 ctccatctcccagatcaagcg 8207
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 394 ccaagaactccatctcccagatcaa 418 |||||||||||||||| |||||||| Sbjct: 5642291 ccaagaactccatctcgcagatcaa 5642315
>gb|AC004510.1|AC004510 Homo sapiens chromosome 19, cosmid R30385, complete sequence Length = 39236 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 401 ctccatctcccagatcaagcg 421 ||||||||||||||||||||| Sbjct: 5000 ctccatctcccagatcaagcg 4980
>gb|AC115793.14| Mus musculus chromosome 9, clone RP23-400G18, complete sequence Length = 199109 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 451 agctgcagaatgatattcag 470 |||||||||||||||||||| Sbjct: 28197 agctgcagaatgatattcag 28178
>ref|XM_387597.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07421.1) partial mRNA Length = 1461 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 17 cctcctctcatccatctccccctc 40 |||||||||||||||| ||||||| Sbjct: 753 cctcctctcatccatcaccccctc 776
>gb|AC096625.25| Mus musculus strain C57BL/6J clone rp23-388i7 map 1, complete sequence Length = 191415 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 gcctcatcagctgcggcggctacc 97 ||||||||||||||||| |||||| Sbjct: 49794 gcctcatcagctgcggctgctacc 49817
>gb|AC163613.5| Mus musculus BAC clone RP24-150N2 from chromosome 1, complete sequence Length = 135256 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 74 gcctcatcagctgcggcggctacc 97 ||||||||||||||||| |||||| Sbjct: 676 gcctcatcagctgcggctgctacc 653
>emb|AL513325.13| Human DNA sequence from clone RP11-332L8 on chromosome 1 Contains an H+ transporting ATPase lysosomal accessory protein 2 (ATP6AP2) pseudogene, the 5' end o the CRB1 gene for crumbs homolog 1 (Drosophila) and a mitochondrial ribosomal protein S21 (MRPS21) pseudogene, complete sequence Length = 212888 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 ctccaccatgaaccccaaga 399 |||||||||||||||||||| Sbjct: 59493 ctccaccatgaaccccaaga 59474
>gb|AC025774.5| Homo sapiens chromosome 5 clone CTD-2292N2, complete sequence Length = 155092 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 caccatgaaccccaagaact 402 |||||||||||||||||||| Sbjct: 133755 caccatgaaccccaagaact 133774
>gb|AC091158.11| Mus musculus Strain C57BL6/J chromosome 6 BAC, RP23-109E8, Complete Sequence, complete sequence Length = 195048 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 agaagcaaagctccagaagc 117 |||||||||||||||||||| Sbjct: 187805 agaagcaaagctccagaagc 187824
>gb|AC134028.10| Homo sapiens 3 BAC RP11-316M24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 106034 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 ctccatctcccagatcaagc 420 |||||||||||||||||||| Sbjct: 74016 ctccatctcccagatcaagc 74035 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 ctccatctcccagatcaagc 420 |||||||||||||||||||| Sbjct: 73075 ctccatctcccagatcaagc 73094
>emb|BX572083.6| Zebrafish DNA sequence from clone DKEY-232J4 in linkage group 13, complete sequence Length = 99030 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 ttgatctgggcaatgagagc 251 |||||||||||||||||||| Sbjct: 68027 ttgatctgggcaatgagagc 68008
>gb|AC117392.4| Homo sapiens 3 BAC RP11-6F2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 147520 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 gacaccagcctcatcagctg 86 |||||||||||||||||||| Sbjct: 6708 gacaccagcctcatcagctg 6689
>dbj|AK125374.1| Homo sapiens cDNA FLJ43384 fis, clone OCBBF2006148, moderately similar to P53-BINDING PROTEIN 2 Length = 3137 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 gaagcttctctggcaccggc 132 |||||||||||||||||||| Sbjct: 88 gaagcttctctggcaccggc 69
>gb|AC025475.5| Homo sapiens chromosome 5 clone RP11-351N6, complete sequence Length = 186462 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 gctgctgccaagacaccagc 75 |||||||||||||||||||| Sbjct: 9060 gctgctgccaagacaccagc 9041
>gb|AC093218.2| Homo sapiens chromosome 5 clone CTD-2131P18, complete sequence Length = 105360 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 caccatgaaccccaagaact 402 |||||||||||||||||||| Sbjct: 10039 caccatgaaccccaagaact 10058
>gb|AC156017.2| Mus musculus BAC clone RP24-239B9 from chromosome 16, complete sequence Length = 166416 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 445 atcctgagctgcagaatgatattc 468 |||||||||| ||||||||||||| Sbjct: 102887 atcctgagctacagaatgatattc 102910
>gb|AC113431.2| Homo sapiens chromosome 5 clone RP11-90F2, complete sequence Length = 156789 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 gctgctgccaagacaccagc 75 |||||||||||||||||||| Sbjct: 148737 gctgctgccaagacaccagc 148718
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 134 acggcctcctcaccgcgggtgtag 157 |||||||||||||||| ||||||| Sbjct: 3985224 acggcctcctcaccgccggtgtag 3985247
>emb|AJ249358.1|GAS249358 Grapevine asteroid mosaic-associated virus partial mRNA for methyltransferase domain Length = 575 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 aggagtccaagcgggagaca 320 |||||||||||||||||||| Sbjct: 298 aggagtccaagcgggagaca 279
>emb|AL049840.8|CNS0000K Human chromosome 14 DNA sequence BAC R-73M18 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 165617 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 gaagcttctctggcaccggc 132 |||||||||||||||||||| Sbjct: 109196 gaagcttctctggcaccggc 109177
>emb|CT009576.9| Mouse DNA sequence from clone RP23-36H10 on chromosome 16, complete sequence Length = 256007 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 445 atcctgagctgcagaatgatattc 468 |||||||||| ||||||||||||| Sbjct: 203334 atcctgagctacagaatgatattc 203357
>dbj|AB210837.1| Rousettus aegyptiacus CD4 mRNA for CD4 antigen, complete cds Length = 1905 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 ggcaccgcaggcgccgccaa 379 |||||||||||||||||||| Sbjct: 1480 ggcaccgcaggcgccgccaa 1499
>gb|AC138622.4| Mus musculus BAC clone RP23-100J15 from chromosome 6, complete sequence Length = 194611 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 agaagcaaagctccagaagc 117 |||||||||||||||||||| Sbjct: 49613 agaagcaaagctccagaagc 49632
>dbj|AB070950.1| Streptomyces avermitilis peptide-1 biosynthetic gene cluster Length = 21391 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 134 acggcctcctcaccgcgggtgtag 157 |||||||||||||||| ||||||| Sbjct: 10968 acggcctcctcaccgccggtgtag 10945 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,747,569 Number of Sequences: 3902068 Number of extensions: 3747569 Number of successful extensions: 66530 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66333 Number of HSP's gapped (non-prelim): 191 length of query: 485 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 463 effective length of database: 17,147,199,772 effective search space: 7939153494436 effective search space used: 7939153494436 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)