ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl53d04 |
|---|---|
| Clone Library Name | barley_pub |
>CCD95_RAT (Q6AYH2) Coiled-coil domain-containing protein 95| Length = 244 Score = 33.1 bits (74), Expect = 0.35 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = +3 Query: 15 SEASETE--KRRPALPAPKERASETQK*GAPSPDKPSLPLASSARLQPHGRP 164 S+ SETE + PAPK + S GAPSP SLP +S LQ G P Sbjct: 76 SDNSETEGTPKLSDTPAPKRKRSPPMG-GAPSPSSLSLPPSSGFPLQTSGAP 126
>PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) (Protein FB19) Length = 925 Score = 32.7 bits (73), Expect = 0.45 Identities = 19/63 (30%), Positives = 27/63 (42%) Frame = +3 Query: 3 KGKGSEASETEKRRPALPAPKERASETQK*GAPSPDKPSLPLASSARLQPHGRPRRSIGT 182 +GK S T K PAP A +T + G P P L +A L+P + + + Sbjct: 323 EGKTSTEPSTAKPSSPEPAPPSEAMDTDRPGTPVPPVEVPELMDTASLEPGALDAKPVES 382 Query: 183 AGD 191 GD Sbjct: 383 PGD 385
>SET1A_HUMAN (O15047) Histone-lysine N-methyltransferase, H3 lysine-4 specific| SET1 (EC 2.1.1.43) (Set1/Ash2 histone methyltransferase complex subunit SET1) (SET-domain-containing protein 1A) Length = 1707 Score = 32.3 bits (72), Expect = 0.59 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Frame = +3 Query: 15 SEASETEKRRPALPAPKERASETQK*GAPSPDKPSL--PLASSARLQPHGRPRRSIGTAG 188 SEASE ++ RP+ PA ++ Q+ A P +P P R + G+ R+S Sbjct: 904 SEASEEKRPRPSTPAEEDEDDPEQEKEAGEPGRPGTKPPKRDEERGKTQGKHRKSFALDS 963 Query: 189 DG 194 +G Sbjct: 964 EG 965
>PP1RA_PANTR (Q7YR38) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) (Protein FB19) Length = 940 Score = 32.0 bits (71), Expect = 0.78 Identities = 19/63 (30%), Positives = 26/63 (41%) Frame = +3 Query: 3 KGKGSEASETEKRRPALPAPKERASETQK*GAPSPDKPSLPLASSARLQPHGRPRRSIGT 182 +GK S T K PAP A E + G P P L +A L+P + + + Sbjct: 323 EGKTSTEPSTAKPSSPEPAPPSEAMEADRPGTPVPPVEVPELMDTASLEPGALDAKPVES 382 Query: 183 AGD 191 GD Sbjct: 383 PGD 385
>3BP1_MOUSE (P55194) SH3 domain-binding protein 1 (3BP-1)| Length = 601 Score = 32.0 bits (71), Expect = 0.78 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = +3 Query: 42 RPALPAPKERASETQK*GAPSPDKPSLPLASSARLQPHGRPRRSIGTA 185 RP +P P+ ++ + SP PSLP S + P PRR +GT+ Sbjct: 484 RPTMPPPQPSSTRS------SPPAPSLPPGSVSPGTPQALPRRLVGTS 525
>CS016_HUMAN (Q8ND99) Protein C19orf16| Length = 567 Score = 31.2 bits (69), Expect = 1.3 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +3 Query: 9 KGSEASETEKRRPALPAPKERASETQK*GAPSPDKPSLPLASSARLQPHGRPRRS 173 K AS ++ PA+PAP ++A APS P++P S PR++ Sbjct: 94 KAPAASAPPRKAPAVPAPSQKAPAVP---APSQKAPAIPAPSRKASAASASPRKA 145
>PKHA6_MOUSE (Q7TQG1) Pleckstrin homology domain-containing family A member 6| (Phosphoinositol 3-phosphate-binding protein 3) (PEPP-3) Length = 1173 Score = 31.2 bits (69), Expect = 1.3 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 11/62 (17%) Frame = +3 Query: 6 GKGSEASETEKRRP-----------ALPAPKERASETQK*GAPSPDKPSLPLASSARLQP 152 G+G E +E RP LP+ E ASE G+P PD P +P QP Sbjct: 213 GRGCEKAERRPERPEVKKETLVKANGLPSGPETASEP---GSPYPDGPRVPGGGEHPAQP 269 Query: 153 HG 158 +G Sbjct: 270 NG 271
>PP1RA_HUMAN (Q96QC0) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (Phosphatase 1 nuclear targeting subunit) (MHC class I region proline-rich protein CAT53) (FB19 protein) (PP1-binding protein of 114 kDa) (p99) Length = 940 Score = 30.8 bits (68), Expect = 1.7 Identities = 18/63 (28%), Positives = 26/63 (41%) Frame = +3 Query: 3 KGKGSEASETEKRRPALPAPKERASETQK*GAPSPDKPSLPLASSARLQPHGRPRRSIGT 182 +GK S T K PAP A + + G P P L +A L+P + + + Sbjct: 323 EGKTSTEPSTAKPSSPEPAPPSEAMDADRPGTPVPPVEVPELMDTASLEPGALDAKPVES 382 Query: 183 AGD 191 GD Sbjct: 383 PGD 385
>PODXL_RABIT (Q28645) Podocalyxin-like protein 1 precursor| Length = 551 Score = 30.8 bits (68), Expect = 1.7 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 8/59 (13%) Frame = +3 Query: 6 GKGSEASETEKRRPALPAPKERASETQK*GAPSPDKPSLPLAS--------SARLQPHG 158 G GS T + +PA P ++ETQ +P P P+ P +S S LQP G Sbjct: 216 GTGSGTLSTPQGKPATLTPVASSAETQGMPSPMPPSPASPSSSPFPSSPSPSPALQPSG 274
>NOLA1_CAEEL (Q9TYK1) Putative H/ACA ribonucleoprotein complex subunit 1-like| protein Length = 244 Score = 30.8 bits (68), Expect = 1.7 Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 3/45 (6%) Frame = -3 Query: 173 GTAGAAVGLETGGRSK---GERGFVRRGGASFLGLARSLFGGWEG 48 G G G + GGR G GF R GG F G R FGG G Sbjct: 154 GRGGRGRGGDRGGRGSDRGGRGGFGRGGGGGFRGGDRGGFGGGRG 198
>PKHA6_HUMAN (Q9Y2H5) Pleckstrin homology domain-containing family A member 6| (Phosphoinositol 3-phosphate-binding protein 3) (PEPP-3) Length = 1048 Score = 30.8 bits (68), Expect = 1.7 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 11/62 (17%) Frame = +3 Query: 6 GKGSEASETEKRRP-----------ALPAPKERASETQK*GAPSPDKPSLPLASSARLQP 152 G+G E +E RP LPA E ASE G+P P+ P +P QP Sbjct: 213 GRGCEKAERRPERPEVKKEPPVKANGLPAGPEPASEP---GSPYPEGPRVPGGGEQPAQP 269 Query: 153 HG 158 +G Sbjct: 270 NG 271
>CT144_HUMAN (Q9BQM9) Protein C20orf144| Length = 153 Score = 30.8 bits (68), Expect = 1.7 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = +2 Query: 386 DGGARATTRWPTSTARWRAPGAA 454 +GGARA WP +R+R+PG A Sbjct: 109 EGGARAALSWPRLLSRFRSPGKA 131
>IF2_MYCLE (Q9Z5I9) Translation initiation factor IF-2| Length = 924 Score = 30.4 bits (67), Expect = 2.3 Identities = 24/76 (31%), Positives = 29/76 (38%) Frame = -3 Query: 269 APRARKAAAPICCRPGGRGDANLDKSIPCCTNGTAGAAVGLETGGRSKGERGFVRRGGAS 90 APR + + + RPGG + G G GGRS G R GG Sbjct: 197 APRPSASPSSMSPRPGGAVGGGGPRPPRTGVPRPGGGRPGAPVGGRSDAGGGNYRGGGVG 256 Query: 89 FLGLARSLFGGWEGRP 42 L S GG+ GRP Sbjct: 257 ALPGGGS--GGFRGRP 270
>PP1RA_MACMU (Q5TM61) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) Length = 940 Score = 30.4 bits (67), Expect = 2.3 Identities = 18/63 (28%), Positives = 26/63 (41%) Frame = +3 Query: 3 KGKGSEASETEKRRPALPAPKERASETQK*GAPSPDKPSLPLASSARLQPHGRPRRSIGT 182 +GK S T K PAP A + + G P P L +A L+P + + + Sbjct: 323 EGKTSTEPSTAKPSSPEPAPPSEAMDIDRPGTPVPPVEVPELMDTASLEPGALDAKPVES 382 Query: 183 AGD 191 GD Sbjct: 383 PGD 385
>CCD95_HUMAN (Q8NBZ0) Coiled-coil domain-containing protein 95| Length = 244 Score = 30.4 bits (67), Expect = 2.3 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = +3 Query: 15 SEASETE--KRRPALPAPKERASETQK*GAPSPDKPSLPLASSARLQPHGRP 164 S+ SETE + PAPK + S GAPSP SLP ++ LQ G P Sbjct: 76 SDNSETEGTPKLSDTPAPKRKRSPPLG-GAPSPSSLSLPPSTGFPLQASGVP 126
>SMC_MYCTU (Q10970) Chromosome partition protein smc| Length = 1205 Score = 30.4 bits (67), Expect = 2.3 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Frame = +1 Query: 178 VQQGMDLSRFASPRPPGLQQIGAAAFRARGACSLRRPRHRGNLTVASALRG-ATGLFYAA 354 +++ + R +P Q I AAA RARG R R A+A+RG A L AA Sbjct: 765 LRKAQETQRVQVAQPIDRQAISAAADRARGVEVEARLAVRTAEERANAVRGRADSLRRAA 824 Query: 355 AAPNHARLRLRR 390 AA AR+R ++ Sbjct: 825 AAEREARVRAQQ 836
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2| Length = 1004 Score = 30.4 bits (67), Expect = 2.3 Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Frame = +3 Query: 12 GSEASETEKRRPALP--APKERASETQK*GAPSPDKPSLPLASSARLQPHGRPRRSIGTA 185 GS+ S+T + A APK AS K GAP+ KP+ P A A P G A Sbjct: 55 GSDKSDTAAKPAAAKPAAPKPAASAAPKPGAPA--KPAAPAAKPAPAAPSAASAAKPGAA 112 Query: 186 GDGFVQVR 209 VQ + Sbjct: 113 PKPGVQAK 120
>UL51_PRVKA (Q85227) Protein UL51| Length = 236 Score = 30.0 bits (66), Expect = 2.9 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = +3 Query: 42 RPALPAPKERASETQK*GAPSPD-KPSLPLASSARLQPHGRPRR 170 RPA P P E A E ++ P D P LP + A+ +P + RR Sbjct: 186 RPAPPPPPEEAGEDEEGDRPEDDAAPLLPPRAPAKTRPPEKARR 229
>HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 (Brain cyclic nucleotide gated channel 2) (BCNG-2) (Hyperpolarization-activated cation channel 1) (HAC-1) Length = 863 Score = 30.0 bits (66), Expect = 2.9 Identities = 23/82 (28%), Positives = 27/82 (32%), Gaps = 18/82 (21%) Frame = -3 Query: 275 EQAPRARKAAAPICCRPG----------GRGDANLDKSIPC--------CTNGTAGAAVG 150 E PRAR + C PG GRG+ P C +G + Sbjct: 55 EPGPRARLCSRDSACTPGAAKGGANGECGRGEPQCSPEGPARGPKVSFSCRGAASGPSAA 114 Query: 149 LETGGRSKGERGFVRRGGASFL 84 E G G G R ASFL Sbjct: 115 EEAGSEEAGPAGEPRGSQASFL 136
>NFIA_MOUSE (Q02780) Nuclear factor 1 A-type (Nuclear factor 1/A) (NF1-A)| (NFI-A) (NF-I/A) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 532 Score = 29.6 bits (65), Expect = 3.8 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 11/64 (17%) Frame = +3 Query: 6 GKGSEASETEKRRPALPAPKE-RASETQK*GAPSPDKPS----------LPLASSARLQP 152 G GS++S + P LP+P + SE +PSP + S P+ + R P Sbjct: 325 GSGSQSSGWHEVEPGLPSPSTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASP 384 Query: 153 HGRP 164 H P Sbjct: 385 HATP 388
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 29.6 bits (65), Expect = 3.8 Identities = 17/48 (35%), Positives = 23/48 (47%) Frame = +3 Query: 27 ETEKRRPALPAPKERASETQK*GAPSPDKPSLPLASSARLQPHGRPRR 170 ET++ P + KER E +K SP + S +R H RPRR Sbjct: 254 ETKEISPERNSKKEREKEKEKTRQRSPTRSKSRSRSRSRSPSHSRPRR 301
>Y4VH_RHISN (Q53216) Hypothetical 24.6 kDa protein y4vH| Length = 218 Score = 29.3 bits (64), Expect = 5.0 Identities = 18/50 (36%), Positives = 24/50 (48%) Frame = +3 Query: 33 EKRRPALPAPKERASETQK*GAPSPDKPSLPLASSARLQPHGRPRRSIGT 182 EK+RP + ER Q GAP P+ P L S R+ P+ IG+ Sbjct: 165 EKQRPPKSSEAERFGPRQPIGAPHPNDPVYEL-SKRRVAAKNHPKDLIGS 213
>CTDP1_MOUSE (Q7TSG2) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (TFIIF-associating CTD phosphatase) Length = 960 Score = 29.3 bits (64), Expect = 5.0 Identities = 19/53 (35%), Positives = 30/53 (56%) Frame = +3 Query: 6 GKGSEASETEKRRPALPAPKERASETQK*GAPSPDKPSLPLASSARLQPHGRP 164 G+GS+ S+ EK++ P+++ +E ++ AP P KP P R QP G P Sbjct: 857 GEGSDDSDIEKKK-----PEDQDNEQER--APKPRKPRAP--GIRREQPVGLP 900
>PRP4B_HUMAN (Q13523) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)| (PRP4 pre-mRNA-processing factor 4 homolog) (PRP4 kinase) Length = 1007 Score = 29.3 bits (64), Expect = 5.0 Identities = 17/57 (29%), Positives = 29/57 (50%) Frame = +3 Query: 3 KGKGSEASETEKRRPALPAPKERASETQK*GAPSPDKPSLPLASSARLQPHGRPRRS 173 K + S+ SET+K + + +P + AS ++ +PS P S +P + RRS Sbjct: 310 KERKSKRSETDKEKKPIKSPSKDASSGKENRSPSRRPGRSPKRRSLSPKPRDKSRRS 366
>AMFR2_HUMAN (Q9UKV5) Autocrine motility factor receptor, isoform 2 (EC 6.3.2.-)| (AMF receptor) (gp78) Length = 643 Score = 29.3 bits (64), Expect = 5.0 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = +3 Query: 42 RPALPAPKERASETQK*GAPSPDKPSLPLASSARLQ 149 RPAL +P ER S Q+ G S +PL S RL+ Sbjct: 511 RPALNSPVERPSSDQEEGETSAQTERVPLDLSPRLE 546
>PP1RA_MOUSE (Q80W00) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) Length = 888 Score = 28.9 bits (63), Expect = 6.6 Identities = 17/63 (26%), Positives = 25/63 (39%) Frame = +3 Query: 3 KGKGSEASETEKRRPALPAPKERASETQK*GAPSPDKPSLPLASSARLQPHGRPRRSIGT 182 +GK S T K PAP +T + G P P L +A +P + + + Sbjct: 323 EGKTSTEQSTAKPSSPEPAPPAEPMDTDRPGTPVPPVEVPELMDAASSEPGALDAKPVDS 382 Query: 183 AGD 191 GD Sbjct: 383 PGD 385
>TRIO_HUMAN (O75962) Triple functional domain protein (PTPRF-interacting protein)| Length = 3038 Score = 28.9 bits (63), Expect = 6.6 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 5/57 (8%) Frame = +3 Query: 12 GSEASETEKRRPALPAPKERASETQK*GAP-----SPDKPSLPLASSARLQPHGRPR 167 G++A +E R A P PK + E+ + GA SPD P+ +S P G+PR Sbjct: 2337 GADAEGSE--REAEPIPKMKVLESPRKGAANASGSSPDAPAKDARASLGTLPLGKPR 2391
>PCLO_CHICK (Q9PU36) Protein piccolo (Aczonin) (Fragment)| Length = 5120 Score = 28.9 bits (63), Expect = 6.6 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = +3 Query: 45 PALPAPKERASETQK*GAPSPDKPSLPLASSARLQPHGRPRRSIG 179 P P P++ S AP P KPSL + S + QP +P R G Sbjct: 214 PTKPLPQQPDSAKTSSQAPPPTKPSLQQSGSVK-QPSQQPARQGG 257
>SPD2_NEPCL (P46804) Spidroin 2 (Dragline silk fibroin 2) (Fragment)| Length = 627 Score = 28.9 bits (63), Expect = 6.6 Identities = 25/83 (30%), Positives = 32/83 (38%) Frame = -3 Query: 287 GRRSEQAPRARKAAAPICCRPGGRGDANLDKSIPCCTNGTAGAAVGLETGGRSKGERGFV 108 G++ P + AAA PGG G A S P G A +A GG ++G Sbjct: 446 GQQGPSGPGSAAAAAAAAAGPGGYGPAQQGPSGP----GIAASAASAGPGGYGPAQQGPA 501 Query: 107 RRGGASFLGLARSLFGGWEGRPP 39 G S +A S G G P Sbjct: 502 GYGPGS--AVAASAGAGSAGYGP 522
>KCNC3_RAT (Q01956) Potassium voltage-gated channel subfamily C member 3| (Voltage-gated potassium channel subunit Kv3.3) (KSHIIID) Length = 889 Score = 28.9 bits (63), Expect = 6.6 Identities = 18/55 (32%), Positives = 25/55 (45%) Frame = -3 Query: 260 ARKAAAPICCRPGGRGDANLDKSIPCCTNGTAGAAVGLETGGRSKGERGFVRRGG 96 A A AP+ C PGGR ++ PC +G A+G GG + + GG Sbjct: 52 ASPAGAPLSCGPGGR------RAEPC--SGLPAVAMGRHGGGGGDSGKIVINVGG 98
>EBNA1_EBV (P03211) Epstein-Barr nuclear antigen 1 (EBV nuclear antigen 1)| (EBNA-1) Length = 641 Score = 28.9 bits (63), Expect = 6.6 Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Frame = -3 Query: 224 GGRGDANLDKSIPCCTNGTAGAA-VGLETGGRSKGERGFVRRGGASFLGLARSLFGGWEG 48 GG G A + G AGA G GGR +G G RGG+ G R GG G Sbjct: 298 GGAGGAGAGGAGGAGAGGGAGAGGAGAGGGGRGRGGSGGRGRGGSG--GRGRGGSGGRRG 355 Query: 47 R 45 R Sbjct: 356 R 356
>CWC27_ASPFU (Q4WE62) Peptidyl-prolyl isomerase cwc27 (EC 5.2.1.8)| Length = 559 Score = 28.9 bits (63), Expect = 6.6 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Frame = +3 Query: 3 KGKGSEASETEKRRPALPAPKERASETQK*GAPSPDK-PSLPL---ASSARLQPHGRPRR 170 K EA + ++RP P+P+ S +K +PD LPL S AR P P R Sbjct: 263 KKTSPEAEQQTRKRPRSPSPRRSLSAERKHRPKTPDPLTQLPLPDPESPARSPPQSPPAR 322
>FXL13_HUMAN (Q8NEE6) F-box/LRR-repeat protein 13 (F-box and leucine-rich repeat| protein 13) Length = 735 Score = 28.9 bits (63), Expect = 6.6 Identities = 17/41 (41%), Positives = 18/41 (43%) Frame = +1 Query: 199 SRFASPRPPGLQQIGAAAFRARGACSLRRPRHRGNLTVASA 321 SR S G I FRA AC LR+ R GN V A Sbjct: 376 SRITSLVFTGAPHISDCTFRALSACKLRKIRFEGNKRVTDA 416
>IF4G1_HUMAN (Q04637) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220) Length = 1600 Score = 28.5 bits (62), Expect = 8.6 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Frame = +3 Query: 42 RPALPAPKERASETQK*GAPSPDKPSLPLASSARLQPHGRPRRSI-GTAGDGFVQVRVS 215 RP LP P+ SE+Q P PS + S L+P P ++ GD +++S Sbjct: 244 RPGLPGPEHSPSESQ------PSSPSPTPSPSPVLEPGSEPNLAVLSIPGDTMTTIQMS 296
>NFIA_RAT (P09414) Nuclear factor 1 A-type (Nuclear factor 1/A) (NF1-A)| (NFI-A) (NF-I/A) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 509 Score = 28.5 bits (62), Expect = 8.6 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 11/64 (17%) Frame = +3 Query: 6 GKGSEASETEKRRPALPAPKE-RASETQK*GAPSPDKPS----------LPLASSARLQP 152 G GS++S + P +P+P + SE +PSP + S P+ + R P Sbjct: 302 GSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASP 361 Query: 153 HGRP 164 H P Sbjct: 362 HATP 365
>NFIA_HUMAN (Q12857) Nuclear factor 1 A-type (Nuclear factor 1/A) (NF1-A)| (NFI-A) (NF-I/A) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 509 Score = 28.5 bits (62), Expect = 8.6 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 11/64 (17%) Frame = +3 Query: 6 GKGSEASETEKRRPALPAPKE-RASETQK*GAPSPDKPS----------LPLASSARLQP 152 G GS++S + P +P+P + SE +PSP + S P+ + R P Sbjct: 302 GSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASP 361 Query: 153 HGRP 164 H P Sbjct: 362 HATP 365
>CREA_COCCA (Q9HFS2) DNA-binding protein creA (Carbon catabolite repressor)| Length = 430 Score = 28.5 bits (62), Expect = 8.6 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Frame = +3 Query: 30 TEKRRPALPAPKERASETQK*GAPSPDKPSLPLAS---SARLQPHG 158 T+K RP P+ S T + SP PLA+ S RL+PHG Sbjct: 284 TKKSRPGSPSSTAPPSPTFSHDSCSPTPDHTPLATPAHSPRLRPHG 329
>BRPF1_HUMAN (P55201) Peregrin (Bromodomain and PHD finger-containing protein 1)| (BR140 protein) Length = 1214 Score = 28.5 bits (62), Expect = 8.6 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Frame = +3 Query: 39 RRPALPAPKERASE-TQK*GAPSPDKPSLPLASSARLQPHGR-PRRSIGTAGD 191 +RP P PK R S+ T G P LP+ SS R + GR PR S + D Sbjct: 906 KRPGRP-PKNRESQMTPSHGGSPVGPPQLPIMSSLRQRKRGRSPRPSSSSDSD 957
>RING1_CANFA (Q5TJF3) Ubiquitin ligase protein RING1 (EC 6.3.2.-) (RING finger| protein 1) (RING1a) Length = 406 Score = 28.5 bits (62), Expect = 8.6 Identities = 19/61 (31%), Positives = 25/61 (40%) Frame = -3 Query: 278 SEQAPRARKAAAPICCRPGGRGDANLDKSIPCCTNGTAGAAVGLETGGRSKGERGFVRRG 99 S+ AP + AP R GG G +++ T G VG G G+RG G Sbjct: 188 SDSAPDSAPGPAPKRPRGGGAGGSSVG------TGGGGAGGVGGGAGSEDSGDRGGTLGG 241 Query: 98 G 96 G Sbjct: 242 G 242
>IF2_AGRT5 (Q8UJ51) Translation initiation factor IF-2| Length = 913 Score = 28.5 bits (62), Expect = 8.6 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 1/67 (1%) Frame = -3 Query: 290 RGRRSEQAPRARKAAAPIC-CRPGGRGDANLDKSIPCCTNGTAGAAVGLETGGRSKGERG 114 R + + P A A AP RP + A +S P + A A G TGG + +RG Sbjct: 197 RAEPASERPAAAAAPAPRTDARP--QSAAAAPRSAPATPD--AAAPRGRRTGGDDEDDRG 252 Query: 113 FVRRGGA 93 VRRG + Sbjct: 253 AVRRGSS 259 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,666,472 Number of Sequences: 219361 Number of extensions: 796493 Number of successful extensions: 3830 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 3507 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3808 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
