ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl53d04 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL596129.27| Mouse DNA sequence from clone RP23-294E23 on chromosome 11 Contains the 3' end of the Myh3 gene for embryonic skeletal muscle myosin heavy polypeptide 3, four novel genes (2310065F04Rik), the Myh2 gene for adult skeletal muscle myosin heavy polypeptide 2, the Myh1 gene for adult skeletal muscle myosin heavy polypeptide 1, the Myh4 gene for skeletal muscle myosin heavy polypeptide 4 and the Myh8 gene for perinatal skeletal muscle myosin heavy polypeptide 8 (4832426G23Rik), complete sequence Length = 221384 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 65 agagcgagcgagcgagacccagaaa 89 ||||||||||||||||||||||||| Sbjct: 9906 agagcgagcgagcgagacccagaaa 9882
>gb|AE005748.1| Caulobacter crescentus CB15 section 74 of 359 of the complete genome Length = 5664 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Minus Query: 411 gctggcctacgtcgacggcccgctggagggc 441 |||||||| |||||||||||||||| ||||| Sbjct: 1991 gctggccttcgtcgacggcccgctgcagggc 1961
>ref|XM_469839.1| Oryza sativa (japonica cultivar-group), mRNA Length = 645 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 340 ctcttctacgccgccgccgcc 360 ||||||||||||||||||||| Sbjct: 445 ctcttctacgccgccgccgcc 465
>ref|XM_467985.1| Oryza sativa (japonica cultivar-group), mRNA Length = 972 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 240 cggcgccgccgccttccgcgc 260 ||||||||||||||||||||| Sbjct: 411 cggcgccgccgccttccgcgc 431
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 238 atcggcgccgccgccttccgc 258 ||||||||||||||||||||| Sbjct: 2544000 atcggcgccgccgccttccgc 2544020
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 340 ctcttctacgccgccgccgcc 360 ||||||||||||||||||||| Sbjct: 31055832 ctcttctacgccgccgccgcc 31055812
>ref|XM_762678.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_448_23002_22403) partial mRNA Length = 600 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 345 ctacgccgccgccgccccaaa 365 ||||||||||||||||||||| Sbjct: 388 ctacgccgccgccgccccaaa 408
>gb|AC079887.17| Oryza sativa (japonica cultivar-group) chromosome 3 BAC OSJNBa0040E01 genomic sequence, complete sequence Length = 168759 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 340 ctcttctacgccgccgccgcc 360 ||||||||||||||||||||| Sbjct: 40232 ctcttctacgccgccgccgcc 40252
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 231 gcagcagatcggcgccgccgc 251 ||||||||||||||||||||| Sbjct: 2032386 gcagcagatcggcgccgccgc 2032406
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 241 ggcgccgccgccttccgcgcc 261 ||||||||||||||||||||| Sbjct: 1106334 ggcgccgccgccttccgcgcc 1106314
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 340 ctcttctacgccgccgccgcc 360 ||||||||||||||||||||| Sbjct: 31146355 ctcttctacgccgccgccgcc 31146335
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 240 cggcgccgccgccttccgcgc 260 ||||||||||||||||||||| Sbjct: 32399627 cggcgccgccgccttccgcgc 32399607
>dbj|AP004125.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1767_D02 Length = 139145 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 240 cggcgccgccgccttccgcgc 260 ||||||||||||||||||||| Sbjct: 61140 cggcgccgccgccttccgcgc 61120
>dbj|AP004080.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1079_F11 Length = 122402 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 240 cggcgccgccgccttccgcgc 260 ||||||||||||||||||||| Sbjct: 3020 cggcgccgccgccttccgcgc 3000
>dbj|AK102002.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033079N03, full insert sequence Length = 759 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 340 ctcttctacgccgccgccgcc 360 ||||||||||||||||||||| Sbjct: 582 ctcttctacgccgccgccgcc 602
>ref|NM_211273.1| Eremothecium gossypii AFR371Wp (AFR371W), mRNA Length = 3081 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 241 ggcgccgccgccttccgcgcc 261 ||||||||||||||||||||| Sbjct: 572 ggcgccgccgccttccgcgcc 552
>dbj|AK059403.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-B07, full insert sequence Length = 1028 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 340 ctcttctacgccgccgccgcc 360 ||||||||||||||||||||| Sbjct: 714 ctcttctacgccgccgccgcc 734
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ggggatggatttgtccaggt 205 |||||||||||||||||||| Sbjct: 1832064 ggggatggatttgtccaggt 1832045
>gb|AY484467.1| Pseudomonas aeruginosa uricase gene, partial cds Length = 1344 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 gcgccgccgccttccgcgcc 261 |||||||||||||||||||| Sbjct: 782 gcgccgccgccttccgcgcc 763
>ref|NM_197523.1| Oryza sativa (japonica cultivar-group) putative receptor-like protein kinase (OSJNBa0053C23.25), mRNA Length = 2025 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 cggcgccgccgccttccgcg 259 |||||||||||||||||||| Sbjct: 866 cggcgccgccgccttccgcg 885
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 ccgggcctgcagcagatcggcgcc 246 |||||||||| ||||||||||||| Sbjct: 812305 ccgggcctgccgcagatcggcgcc 812282
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 cgccttccgcgcccggggcg 268 |||||||||||||||||||| Sbjct: 929467 cgccttccgcgcccggggcg 929448
>gb|AC130602.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1122D01, complete sequence Length = 126532 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 gcgccgccgccttccgcgcc 261 |||||||||||||||||||| Sbjct: 6547 gcgccgccgccttccgcgcc 6528
>gb|AC117236.4| Mus musculus BAC clone RP23-416K18 from chromosome 12, complete sequence Length = 198569 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 cattggtacagcaggggatg 192 |||||||||||||||||||| Sbjct: 154268 cattggtacagcaggggatg 154287
>gb|AC009197.9| Drosophila melanogaster clone BACR14M08, complete sequence Length = 170053 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 aaaggcagcgaagcgagcga 28 |||||||||||||||||||| Sbjct: 87692 aaaggcagcgaagcgagcga 87711
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 243 cgccgccgccttccgcgcccgggg 266 |||||||| ||||||||||||||| Sbjct: 249574 cgccgccggcttccgcgcccgggg 249551
>gb|AC125254.9| Mus musculus chromosome 9, clone RP24-156I15, complete sequence Length = 161503 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 ccctctctcccccttgcttcttcc 137 ||||||||||||||| |||||||| Sbjct: 95840 ccctctctccccctttcttcttcc 95817
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 gcagcagatcggcgccgccg 250 |||||||||||||||||||| Sbjct: 320577 gcagcagatcggcgccgccg 320596
>ref|XM_535083.2| PREDICTED: Canis familiaris similar to p47 protein isoform a (LOC477891), mRNA Length = 1326 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 tcggcgccgccgccttccgc 258 |||||||||||||||||||| Sbjct: 309 tcggcgccgccgccttccgc 290
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 gcgccggccccgccaccgcg 298 |||||||||||||||||||| Sbjct: 964614 gcgccggccccgccaccgcg 964633
>ref|XM_741289.1| Aspergillus fumigatus Af293 hypothetical protein (Afu4g00740) partial mRNA Length = 1041 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 cctgcagcagatcggcgccg 247 |||||||||||||||||||| Sbjct: 213 cctgcagcagatcggcgccg 232
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 ggcgccgccgccttccgcgc 260 |||||||||||||||||||| Sbjct: 867041 ggcgccgccgccttccgcgc 867060
>emb|AL121789.38|HSJ493H23 Human DNA sequence from clone RP3-493H23 on chromosome 6q26-27 Contains the 5' end of the PDE10A gene for phosphodiesterase 10A and a CpG island, complete sequence Length = 74227 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 cgccgccgccttccgcgccc 262 |||||||||||||||||||| Sbjct: 68638 cgccgccgccttccgcgccc 68657
>emb|AL672018.6| Mouse DNA sequence from clone RP23-365O24 on chromosome 11 Contains part of a novel gene, the Bcl11a gene for B-cell CLL/lymphoma 11A (zinc finger protein), a novel gene and a CpG island, complete sequence Length = 84877 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 gggcaccaggggcagcagct 457 |||||||||||||||||||| Sbjct: 7108 gggcaccaggggcagcagct 7089
>gb|AC092389.4| Oryza sativa chromosome 10 BAC OSJNBa0053C23 genomic sequence, complete sequence Length = 194361 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 cggcgccgccgccttccgcg 259 |||||||||||||||||||| Sbjct: 123584 cggcgccgccgccttccgcg 123603
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 276 gctgcgccggccccgccaccgcgg 299 ||||||||||||||||| |||||| Sbjct: 3722351 gctgcgccggccccgcctccgcgg 3722374
>gb|AF197939.1|AF197939 Mus musculus Gata6 gene, promoter sequence Length = 4343 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 cggccggccctcccagcccc 61 |||||||||||||||||||| Sbjct: 3841 cggccggccctcccagcccc 3822
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 cggcgccgccgccttccgcg 259 |||||||||||||||||||| Sbjct: 20245849 cggcgccgccgccttccgcg 20245868
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 gcgccgccgccttccgcgcc 261 |||||||||||||||||||| Sbjct: 21887333 gcgccgccgccttccgcgcc 21887314
>gb|AC008182.2|AC008182 Drosophila melanogaster, chromosome 2L, region 29F6-30A4, BAC clone BACR48E15, complete sequence Length = 192350 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 aaaggcagcgaagcgagcga 28 |||||||||||||||||||| Sbjct: 22420 aaaggcagcgaagcgagcga 22401
>gb|AE009552.1| Brucella melitensis 16M chromosome I, section 109 of 195 of the complete sequence Length = 10550 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 ccgggcctgcagcagatcggcgcc 246 |||||||||| ||||||||||||| Sbjct: 7204 ccgggcctgccgcagatcggcgcc 7227
>gb|AE004759.1| Pseudomonas aeruginosa PAO1, section 320 of 529 of the complete genome Length = 14309 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 222 cccgggcctgcagcagatcggcgc 245 |||| ||||||||||||||||||| Sbjct: 4855 cccgcgcctgcagcagatcggcgc 4878
>gb|AE004662.1| Pseudomonas aeruginosa PAO1, section 223 of 529 of the complete genome Length = 11687 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 gcgccgccgccttccgcgcc 261 |||||||||||||||||||| Sbjct: 11059 gcgccgccgccttccgcgcc 11040
>gb|AF540993.1| Pseudomonas aeruginosa isolate 2-164 pyoverdin biosynthetic locus, partial sequence Length = 77740 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 gcgccgccgccttccgcgcc 261 |||||||||||||||||||| Sbjct: 851 gcgccgccgccttccgcgcc 832
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 cggcgccgccgccttccgcgcccg 263 ||||||||||||| |||||||||| Sbjct: 3332110 cggcgccgccgccgtccgcgcccg 3332087 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 239 tcggcgccgccgccttccgcgccc 262 |||||||||||||| ||||||||| Sbjct: 2279095 tcggcgccgccgccctccgcgccc 2279118
>gb|AF210249.1|AF210249 Streptomyces verticillus bleomycin biosynthetic gene cluster, complete cds Length = 77457 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 cggcgccgccgccttccgcg 259 |||||||||||||||||||| Sbjct: 13965 cggcgccgccgccttccgcg 13984
>gb|AC026765.22| Homo sapiens 12 BAC RP4-601P9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 129225 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 248 ccgccttccgcgcccggggcgcctgctcgctg 279 ||||||||| ||||||| ||||||||||||| Sbjct: 111176 ccgccttccccgcccggctcgcctgctcgctg 111207
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 ccggcctcttctacgccgcc 354 |||||||||||||||||||| Sbjct: 1813049 ccggcctcttctacgccgcc 1813030
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 ccgggcctgcagcagatcggcgcc 246 |||||||||| ||||||||||||| Sbjct: 834006 ccgggcctgccgcagatcggcgcc 833983
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 gggcctgcagcagatcggcg 244 |||||||||||||||||||| Sbjct: 4125536 gggcctgcagcagatcggcg 4125517
>gb|AC166361.2| Mus musculus BAC clone RP23-293N23 from chromosome 12, complete sequence Length = 212100 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 cattggtacagcaggggatg 192 |||||||||||||||||||| Sbjct: 92189 cattggtacagcaggggatg 92208
>gb|AE003623.2| Drosophila melanogaster chromosome 2L, section 32 of 83 of the complete sequence Length = 234635 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 aaaggcagcgaagcgagcga 28 |||||||||||||||||||| Sbjct: 215926 aaaggcagcgaagcgagcga 215945
>gb|AC102405.8| Mus musculus chromosome 3, clone RP24-318I21, complete sequence Length = 181425 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 accctctctcccccttgctt 132 |||||||||||||||||||| Sbjct: 75976 accctctctcccccttgctt 75957
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 226 ggcctgcagcagatcggcgccgcc 249 ||||||||||| |||||||||||| Sbjct: 4486060 ggcctgcagcacatcggcgccgcc 4486083
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 cggcgccgccgccttccgcg 259 |||||||||||||||||||| Sbjct: 20257125 cggcgccgccgccttccgcg 20257144
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 ccggcctcttctacgccgcc 354 |||||||||||||||||||| Sbjct: 1489317 ccggcctcttctacgccgcc 1489298
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 ccgggcctgcagcagatcggcgcc 246 |||||||||| ||||||||||||| Sbjct: 830284 ccgggcctgccgcagatcggcgcc 830261
>gb|AC087782.34| Mus musculus strain C57BL/6J chromosome 16 clone rp23-81d13, complete sequence Length = 177250 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 438 gggcaccaggggcagcagct 457 |||||||||||||||||||| Sbjct: 66525 gggcaccaggggcagcagct 66544
>dbj|AP006646.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT04I09, TM0269b, complete sequence Length = 66087 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 tctctcccccttgcttcttc 136 |||||||||||||||||||| Sbjct: 18922 tctctcccccttgcttcttc 18941
>dbj|AP004978.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT44L05, TM0162a, complete sequence Length = 92619 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 tctctcccccttgcttcttc 136 |||||||||||||||||||| Sbjct: 5879 tctctcccccttgcttcttc 5898 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,123,300 Number of Sequences: 3902068 Number of extensions: 4123300 Number of successful extensions: 149997 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 147504 Number of HSP's gapped (non-prelim): 2493 length of query: 460 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 438 effective length of database: 17,147,199,772 effective search space: 7510473500136 effective search space used: 7510473500136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
