ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl53c09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK121640.1| Oryza sativa (japonica cultivar-group) cDNA clon... 458 e-126
2ref|XM_473987.1| Oryza sativa (japonica cultivar-group), predic... 244 2e-61
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 192 8e-46
4emb|AL732334.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 192 8e-46
5emb|AL662988.4|OSJN00186 Oryza sativa genomic DNA, chromosome 4,... 192 8e-46
6ref|NM_112963.2| Arabidopsis thaliana unknown protein AT3G20720 ... 76 1e-10
7gb|BT006177.1| Arabidopsis thaliana clone RAFL15-48-I15 (R20938)... 76 1e-10
8dbj|AB025629.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 66 1e-07
9emb|AJ492241.1|STU492241 Solanum tuberosum DNA for genomic PstI ... 44 0.44
10gb|AC169505.1| Mus musculus BAC clone RP24-257J8 from chromosome... 42 1.7
11gb|AC040975.8| Homo sapiens chromosome 8, clone RP11-662B19, com... 42 1.7
12gb|U96629.1|HSU96629 Human chromosome 8 BAC clone CIT987SK-2A8 c... 42 1.7
13gb|AC154516.2| Mus musculus BAC clone RP24-83D23 from chromosome... 40 6.8
14gb|AC102656.28| Mus musculus chromosome 5, clone RP23-15G1, comp... 40 6.8
15gb|AC129219.3| Mus musculus BAC clone RP24-474C15 from chromosom... 40 6.8
16emb|AL591789.1|SME591789 Sinorhizobium meliloti 1021 complete ch... 40 6.8
17gb|AC144502.5| Medicago truncatula clone mth2-5p10, complete seq... 40 6.8
18emb|CR626910.5| Zebrafish DNA sequence from clone DKEY-204E20 in... 40 6.8
19emb|AL355862.16| Human DNA sequence from clone RP4-640E24 on chr... 40 6.8
20emb|AL713915.10| Mouse DNA sequence from clone RP23-437C4 on chr... 40 6.8
21emb|AL732293.14| Mouse DNA sequence from clone RP23-360J13 on ch... 40 6.8
22gb|AC103874.2| Homo sapiens chromosome 15, clone RP11-907B8, com... 40 6.8
23gb|AC090685.8| Homo sapiens chromosome 17, clone RP11-252O24, co... 40 6.8
24gb|AC018347.17| Homo sapiens chromosome 15 clone RP11-410F2, com... 40 6.8
25gb|AC182663.2| Populus trichocarpa clone Pop1-16M7, complete seq... 40 6.8
26gb|AC026385.19|AC026385 Mus musculus 17 BAC RP23-413K14 complete... 40 6.8
27ref|NM_058655.3| Caenorhabditis elegans W10C8.4a (W10C8.4) mRNA,... 40 6.8
28gb|AC012323.7|AC012323 Homo sapiens chromosome 16 clone RP11-89O... 40 6.8
29gb|AC073618.48| Homo sapiens 12 BAC RP11-313E9 (Roswell Park Can... 40 6.8
30gb|AC093610.2| Homo sapiens BAC clone RP11-725F23 from 2, comple... 40 6.8
31gb|AC092378.4| Homo sapiens chromosome 16 clone RP11-700H13, com... 40 6.8
32gb|AC019105.7| Homo sapiens BAC clone RP11-475A8 from 2, complet... 40 6.8
33gb|AF002223.2| Homo sapiens chromosome X multiple clones map q28... 40 6.8
34gb|AC092415.3| Homo sapiens chromosome 3 clone RP11-9A14, comple... 40 6.8
35gb|AC055754.21| Homo sapiens 3 BAC RP11-4I2 (Roswell Park Cancer... 40 6.8
36emb|AL049874.3|CNS0000Q Human chromosome 14 DNA sequence BAC R-1... 40 6.8
37emb|AL049781.5|CNS00003 Human chromosome 14 DNA sequence BAC R-3... 40 6.8
38gb|AC006050.1|AC006050 Homo sapiens chromosome 17, clone hRPK.2... 40 6.8
39gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 40 6.8
40emb|CT025760.12| Mouse DNA sequence from clone RP23-351E9 on chr... 40 6.8
41gb|AC130474.12| Mus musculus chromosome 7, clone RP23-178C20, co... 40 6.8
42gb|AC122767.16| Mus musculus chromosome 7, clone RP24-143L4, com... 40 6.8
43emb|AL607032.16| Mouse DNA sequence from clone RP23-15L19 on chr... 40 6.8 
>dbj|AK121640.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055A13, full
            insert sequence
          Length = 4117

 Score =  458 bits (231), Expect = e-126
 Identities = 436/503 (86%), Gaps = 1/503 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    atatggatatgctgataagattgcagatggcatgactgtacaagtaggtatcgtgaacct 60
            |||||||||||||||||||||||||||||| ||||| || ||||| ||||| ||||||||
Sbjct: 548  atatggatatgctgataagattgcagatggaatgacagtccaagtcggtattgtgaacct 607

                                                                        
Query: 61   gctattggaaacacatggaggtactcgccggcaaggagatgcaacatggtcacctccgct 120
             ||||| ||||||||||| ||| | || |  |||||||  ||||| |||||||| |||||
Sbjct: 608  tctattagaaacacatggtggtccacgtcatcaaggaggcgcaacttggtcaccaccgct 667

                                                                        
Query: 121  agctgctatcacatttcgtgatctcgtactgtacacaacaaacgaaaaatggcaggttgt 180
            ||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||||| |||
Sbjct: 668  agcggctatcacatttcgtgatcttgtactgtacactacaaatgaaaaatggcaggctgt 727

                                                                        
Query: 181  aaatttgaaagaagcaagggacttctccaacagcacaggattcatttatgttttcaagaa 240
             ||| |||||||||||||||| || || ||||  | ||||||||||||| |||| |||||
Sbjct: 728  gaatctgaaagaagcaagggatttttcgaacaataaaggattcatttatatttttaagaa 787

                                                                        
Query: 241  attggaatggcagtcactgtcagttgatcttttaccccatcctgatatgtttgccgatgc 300
            |||||||||||| ||||||||||||||||| ||||| |||||||| |||||  | |||||
Sbjct: 788  attggaatggcaatcactgtcagttgatctgttacctcatcctgacatgttcacggatgc 847

                                                                        
Query: 301  acgatttaactcttcaagcagtcaagataacaaacgagatgatgatggtgcaaagcgaat 360
             || ||||||||||| |||||| |||||   ||||||||||||||||||||||| |||||
Sbjct: 848  tcggtttaactcttctagcagtgaagatggaaaacgagatgatgatggtgcaaaacgaat 907

                                                                        
Query: 361  gttctttggcggtgaaagatttttggaaggaatatcaggggaggctaatataactctgca 420
            ||| ||||| |||||||||||||||||||||||||| |||||||| || || ||  |  |
Sbjct: 908  gttttttggtggtgaaagatttttggaaggaatatctggggaggccaacatcacagtcaa 967

                                                                        
Query: 421  acgaacggagcagaacaatccacttggcctggaggttcagctgcatgttactgaagctct 480
            |||||| ||||| ||||||||  |||| || || |||||||||||| |||||||||||||
Sbjct: 968  acgaacagagcaaaacaatcctgttgggcttgaagttcagctgcatattactgaagctct 1027

                                   
Query: 481  ctgtcctg-ctttagtgaacctg 502
            |||||||| ||| ||||||||||
Sbjct: 1028 ctgtcctgccttaagtgaacctg 1050
to top
>ref|XM_473987.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3582

 Score =  244 bits (123), Expect = 2e-61
 Identities = 232/267 (86%), Gaps = 1/267 (0%)
 Strand = Plus / Plus

                                                                       
Query: 237 agaaattggaatggcagtcactgtcagttgatcttttaccccatcctgatatgtttgccg 296
           |||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||  | |
Sbjct: 533 agaaattggaatggcaatcactgtcagttgatctgttacctcatcctgacatgttcacgg 592

                                                                       
Query: 297 atgcacgatttaactcttcaagcagtcaagataacaaacgagatgatgatggtgcaaagc 356
           |||| || ||||||||||| |||||| |||||   ||||||||||||||||||||||| |
Sbjct: 593 atgctcggtttaactcttctagcagtgaagatggaaaacgagatgatgatggtgcaaaac 652

                                                                       
Query: 357 gaatgttctttggcggtgaaagatttttggaaggaatatcaggggaggctaatataactc 416
           ||||||| ||||| |||||||||||||||||||||||||| |||||||| || || ||  
Sbjct: 653 gaatgttttttggtggtgaaagatttttggaaggaatatctggggaggccaacatcacag 712

                                                                       
Query: 417 tgcaacgaacggagcagaacaatccacttggcctggaggttcagctgcatgttactgaag 476
           |  ||||||| ||||| ||||||||  |||| || || |||||||||||| |||||||||
Sbjct: 713 tcaaacgaacagagcaaaacaatcctgttgggcttgaagttcagctgcatattactgaag 772

                                      
Query: 477 ctctctgtcctg-ctttagtgaacctg 502
           |||||||||||| ||| ||||||||||
Sbjct: 773 ctctctgtcctgccttaagtgaacctg 799



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 63/68 (92%)
 Strand = Plus / Plus

                                                                       
Query: 108 ggtcacctccgctagctgctatcacatttcgtgatctcgtactgtacacaacaaacgaaa 167
           ||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 467 ggtcaccaccgctagcggctatcacatttcgtgatcttgtactgtacactacaaatgaaa 526

                   
Query: 168 aatggcag 175
           ||||||||
Sbjct: 527 aatggcag 534
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  192 bits (97), Expect = 8e-46
 Identities = 151/169 (89%)
 Strand = Plus / Minus

                                                                            
Query: 237      agaaattggaatggcagtcactgtcagttgatcttttaccccatcctgatatgtttgccg 296
                |||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||  | |
Sbjct: 32024153 agaaattggaatggcaatcactgtcagttgatctgttacctcatcctgacatgttcacgg 32024094

                                                                            
Query: 297      atgcacgatttaactcttcaagcagtcaagataacaaacgagatgatgatggtgcaaagc 356
                |||| || ||||||||||| |||||| |||||   ||||||||||||||||||||||| |
Sbjct: 32024093 atgctcggtttaactcttctagcagtgaagatggaaaacgagatgatgatggtgcaaaac 32024034

                                                                 
Query: 357      gaatgttctttggcggtgaaagatttttggaaggaatatcaggggaggc 405
                ||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 32024033 gaatgttttttggtggtgaaagatttttggaaggaatatctggggaggc 32023985



 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 65/70 (92%)
 Strand = Plus / Minus

                                                                            
Query: 108      ggtcacctccgctagctgctatcacatttcgtgatctcgtactgtacacaacaaacgaaa 167
                ||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 32024530 ggtcaccaccgctagcggctatcacatttcgtgatcttgtactgtacactacaaatgaaa 32024471

                          
Query: 168      aatggcaggt 177
                ||||||||||
Sbjct: 32024470 aatggcaggt 32024461



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 74/84 (88%), Gaps = 1/84 (1%)
 Strand = Plus / Minus

                                                                            
Query: 420      aacgaacggagcagaacaatccacttggcctggaggttcagctgcatgttactgaagctc 479
                ||||||| ||||| ||||||||  |||| || || |||||||||||| ||||||||||||
Sbjct: 32023857 aacgaacagagcaaaacaatcctgttgggcttgaagttcagctgcatattactgaagctc 32023798

                                        
Query: 480      tctgtcctg-ctttagtgaacctg 502
                ||||||||| ||| ||||||||||
Sbjct: 32023797 tctgtcctgccttaagtgaacctg 32023774



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                            
Query: 18       agattgcagatggcatgactgtacaagtaggtatcgtgaacctgctattggaaacacatg 77
                ||||||||||||| ||||| || ||||| ||||| |||||||| ||||| ||||||||||
Sbjct: 32024782 agattgcagatggaatgacagtccaagtcggtattgtgaaccttctattagaaacacatg 32024723

                 
Query: 78       g 78
                |
Sbjct: 32024722 g 32024722



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                         
Query: 178      tgtaaatttgaaagaagcaagggacttctccaacagcacaggattcatttatgtttt 234
                ||||||| |||||||||||||||| || || ||||  | ||||||||||||| ||||
Sbjct: 32024381 tgtaaatctgaaagaagcaagggatttttcgaacaataaaggattcatttatatttt 32024325
to top
>emb|AL732334.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0323C08, complete
            sequence
          Length = 94903

 Score =  192 bits (97), Expect = 8e-46
 Identities = 151/169 (89%)
 Strand = Plus / Minus

                                                                        
Query: 237  agaaattggaatggcagtcactgtcagttgatcttttaccccatcctgatatgtttgccg 296
            |||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||  | |
Sbjct: 6881 agaaattggaatggcaatcactgtcagttgatctgttacctcatcctgacatgttcacgg 6822

                                                                        
Query: 297  atgcacgatttaactcttcaagcagtcaagataacaaacgagatgatgatggtgcaaagc 356
            |||| || ||||||||||| |||||| |||||   ||||||||||||||||||||||| |
Sbjct: 6821 atgctcggtttaactcttctagcagtgaagatggaaaacgagatgatgatggtgcaaaac 6762

                                                             
Query: 357  gaatgttctttggcggtgaaagatttttggaaggaatatcaggggaggc 405
            ||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 6761 gaatgttttttggtggtgaaagatttttggaaggaatatctggggaggc 6713



 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 65/70 (92%)
 Strand = Plus / Minus

                                                                        
Query: 108  ggtcacctccgctagctgctatcacatttcgtgatctcgtactgtacacaacaaacgaaa 167
            ||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 7258 ggtcaccaccgctagcggctatcacatttcgtgatcttgtactgtacactacaaatgaaa 7199

                      
Query: 168  aatggcaggt 177
            ||||||||||
Sbjct: 7198 aatggcaggt 7189



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 74/84 (88%), Gaps = 1/84 (1%)
 Strand = Plus / Minus

                                                                        
Query: 420  aacgaacggagcagaacaatccacttggcctggaggttcagctgcatgttactgaagctc 479
            ||||||| ||||| ||||||||  |||| || || |||||||||||| ||||||||||||
Sbjct: 6585 aacgaacagagcaaaacaatcctgttgggcttgaagttcagctgcatattactgaagctc 6526

                                    
Query: 480  tctgtcctg-ctttagtgaacctg 502
            ||||||||| ||| ||||||||||
Sbjct: 6525 tctgtcctgccttaagtgaacctg 6502



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                        
Query: 18   agattgcagatggcatgactgtacaagtaggtatcgtgaacctgctattggaaacacatg 77
            ||||||||||||| ||||| || ||||| ||||| |||||||| ||||| ||||||||||
Sbjct: 7510 agattgcagatggaatgacagtccaagtcggtattgtgaaccttctattagaaacacatg 7451

             
Query: 78   g 78
            |
Sbjct: 7450 g 7450



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                     
Query: 178  tgtaaatttgaaagaagcaagggacttctccaacagcacaggattcatttatgtttt 234
            ||||||| |||||||||||||||| || || ||||  | ||||||||||||| ||||
Sbjct: 7109 tgtaaatctgaaagaagcaagggatttttcgaacaataaaggattcatttatatttt 7053
to top
>emb|AL662988.4|OSJN00186 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089N06,
             complete sequence
          Length = 141752

 Score =  192 bits (97), Expect = 8e-46
 Identities = 151/169 (89%)
 Strand = Plus / Minus

                                                                         
Query: 237   agaaattggaatggcagtcactgtcagttgatcttttaccccatcctgatatgtttgccg 296
             |||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||  | |
Sbjct: 44860 agaaattggaatggcaatcactgtcagttgatctgttacctcatcctgacatgttcacgg 44801

                                                                         
Query: 297   atgcacgatttaactcttcaagcagtcaagataacaaacgagatgatgatggtgcaaagc 356
             |||| || ||||||||||| |||||| |||||   ||||||||||||||||||||||| |
Sbjct: 44800 atgctcggtttaactcttctagcagtgaagatggaaaacgagatgatgatggtgcaaaac 44741

                                                              
Query: 357   gaatgttctttggcggtgaaagatttttggaaggaatatcaggggaggc 405
             ||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 44740 gaatgttttttggtggtgaaagatttttggaaggaatatctggggaggc 44692



 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 65/70 (92%)
 Strand = Plus / Minus

                                                                         
Query: 108   ggtcacctccgctagctgctatcacatttcgtgatctcgtactgtacacaacaaacgaaa 167
             ||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 45237 ggtcaccaccgctagcggctatcacatttcgtgatcttgtactgtacactacaaatgaaa 45178

                       
Query: 168   aatggcaggt 177
             ||||||||||
Sbjct: 45177 aatggcaggt 45168



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 74/84 (88%), Gaps = 1/84 (1%)
 Strand = Plus / Minus

                                                                         
Query: 420   aacgaacggagcagaacaatccacttggcctggaggttcagctgcatgttactgaagctc 479
             ||||||| ||||| ||||||||  |||| || || |||||||||||| ||||||||||||
Sbjct: 44564 aacgaacagagcaaaacaatcctgttgggcttgaagttcagctgcatattactgaagctc 44505

                                     
Query: 480   tctgtcctg-ctttagtgaacctg 502
             ||||||||| ||| ||||||||||
Sbjct: 44504 tctgtcctgccttaagtgaacctg 44481



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                         
Query: 18    agattgcagatggcatgactgtacaagtaggtatcgtgaacctgctattggaaacacatg 77
             ||||||||||||| ||||| || ||||| ||||| |||||||| ||||| ||||||||||
Sbjct: 45489 agattgcagatggaatgacagtccaagtcggtattgtgaaccttctattagaaacacatg 45430

              
Query: 78    g 78
             |
Sbjct: 45429 g 45429



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                      
Query: 178   tgtaaatttgaaagaagcaagggacttctccaacagcacaggattcatttatgtttt 234
             ||||||| |||||||||||||||| || || ||||  | ||||||||||||| ||||
Sbjct: 45088 tgtaaatctgaaagaagcaagggatttttcgaacaataaaggattcatttatatttt 45032
to top
>ref|NM_112963.2| Arabidopsis thaliana unknown protein AT3G20720 mRNA, complete cds
          Length = 3693

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 98/118 (83%)
 Strand = Plus / Plus

                                                                       
Query: 174 aggttgtaaatttgaaagaagcaagggacttctccaacagcacaggattcatttatgttt 233
           ||||||||||| |||||||||||||||||||||| |  | ||||||||| |||||| | |
Sbjct: 711 aggttgtaaatctgaaagaagcaagggacttctctactaacacaggatttatttatttgt 770

                                                                     
Query: 234 tcaagaaattggaatggcagtcactgtcagttgatcttttaccccatcctgatatgtt 291
           | |||||| | |||||| |  |  | ||| |||||||| |||| ||||||||||||||
Sbjct: 771 ttaagaaacttgaatgggaagctttatcaattgatcttctaccacatcctgatatgtt 828



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 17  aagattgcagatggcatgactgtacaagt 45
           |||||||||||||| |||||| |||||||
Sbjct: 554 aagattgcagatggaatgactttacaagt 582
to top
>gb|BT006177.1| Arabidopsis thaliana clone RAFL15-48-I15 (R20938) unknown protein
           (At3g20720) mRNA, complete cds
          Length = 3981

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 98/118 (83%)
 Strand = Plus / Plus

                                                                       
Query: 174 aggttgtaaatttgaaagaagcaagggacttctccaacagcacaggattcatttatgttt 233
           ||||||||||| |||||||||||||||||||||| |  | ||||||||| |||||| | |
Sbjct: 710 aggttgtaaatctgaaagaagcaagggacttctctactaacacaggatttatttatttgt 769

                                                                     
Query: 234 tcaagaaattggaatggcagtcactgtcagttgatcttttaccccatcctgatatgtt 291
           | |||||| | |||||| |  |  | ||| |||||||| |||| ||||||||||||||
Sbjct: 770 ttaagaaacttgaatgggaagctttatcaattgatcttctaccacatcctgatatgtt 827



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 336 gagatgatgatggtgcaaagcgaatgttctttggcggtgaaagatttttggaaggaat 393
           ||||||| ||||||||||| ||| | ||||||||||| ||| | ||||| ||||||||
Sbjct: 869 gagatgaggatggtgcaaaacgagtattctttggcggagaacgctttttagaaggaat 926



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 17  aagattgcagatggcatgactgtacaagt 45
           |||||||||||||| |||||| |||||||
Sbjct: 553 aagattgcagatggaatgactttacaagt 581
to top
>dbj|AB025629.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MOE17
          Length = 81677

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                     
Query: 173  caggttgtaaatttgaaagaagcaagggacttctccaacagcacaggattcatttat 229
            |||||||||||| |||||||||||||||||||||| |  | ||||||||| ||||||
Sbjct: 2287 caggttgtaaatctgaaagaagcaagggacttctctactaacacaggatttatttat 2343



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                      
Query: 336  gagatgatgatggtgcaaagcgaatgttctttggcggtgaaagatttttggaaggaat 393
            ||||||| ||||||||||| ||| | ||||||||||| ||| | ||||| ||||||||
Sbjct: 2656 gagatgaggatggtgcaaaacgagtattctttggcggagaacgctttttagaaggaat 2713



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 13   tgataagattgcagatggcatgactgtacaagt 45
            |||| ||||||||||||| |||||| |||||||
Sbjct: 1805 tgatcagattgcagatggaatgactttacaagt 1837



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 264  ttgatcttttaccccatcctgatatgtt 291
            |||||||| |||| ||||||||||||||
Sbjct: 2587 ttgatcttctaccacatcctgatatgtt 2614
to top
>emb|AJ492241.1|STU492241 Solanum tuberosum DNA for genomic PstI fragment from 5'end, clone
           GP219
          Length = 613

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                       
Query: 327 ataacaaacgagatgatgatggtgcaaagcgaatgttctttggcggtgaaagatttttgg 386
           |||||||  ||||||| ||||| ||||||||| | || |||||||| || |||||  | |
Sbjct: 379 ataacaagagagatgaagatggagcaaagcgagtattttttggcggggagagattcattg 320

                     
Query: 387 aaggaatatc 396
           ||||||||||
Sbjct: 319 aaggaatatc 310
to top
>gb|AC169505.1| Mus musculus BAC clone RP24-257J8 from chromosome 16, complete sequence
          Length = 138498

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 434    aacaatccacttggcctggag 454
              |||||||||||||||||||||
Sbjct: 124216 aacaatccacttggcctggag 124236
to top
>gb|AC040975.8| Homo sapiens chromosome 8, clone RP11-662B19, complete sequence
          Length = 199112

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 206    tccaacagcacaggattcatt 226
              |||||||||||||||||||||
Sbjct: 144856 tccaacagcacaggattcatt 144836
to top
>gb|U96629.1|HSU96629 Human chromosome 8 BAC clone CIT987SK-2A8 complete sequence
          Length = 167343

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 206   tccaacagcacaggattcatt 226
             |||||||||||||||||||||
Sbjct: 32651 tccaacagcacaggattcatt 32631
to top
>gb|AC154516.2| Mus musculus BAC clone RP24-83D23 from chromosome 14, complete sequence
          Length = 216566

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   tggtcacctccgctagctgc 126
             ||||||||||||||||||||
Sbjct: 62178 tggtcacctccgctagctgc 62197
to top
>gb|AC102656.28| Mus musculus chromosome 5, clone RP23-15G1, complete sequence
          Length = 227533

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    ggaaacacatggaggtactc 86
             ||||||||||||||||||||
Sbjct: 84115 ggaaacacatggaggtactc 84096
to top
>gb|AC129219.3| Mus musculus BAC clone RP24-474C15 from chromosome 14, complete sequence
          Length = 195935

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    tggtcacctccgctagctgc 126
              ||||||||||||||||||||
Sbjct: 139858 tggtcacctccgctagctgc 139877
to top
>emb|AL591789.1|SME591789 Sinorhizobium meliloti 1021 complete chromosome; segment 8/12
          Length = 294800

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 84     ctcgccggcaaggagatgca 103
              ||||||||||||||||||||
Sbjct: 244607 ctcgccggcaaggagatgca 244588
to top
>gb|AC144502.5| Medicago truncatula clone mth2-5p10, complete sequence
          Length = 91507

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                         
Query: 336   gagatgatgatggtgcaaagcgaatgttctttggcggtgaaagatttttggaaggaatat 395
             ||||||||||||| |||||| || | |||||||| || ||  | ||| | ||||||||||
Sbjct: 25088 gagatgatgatggcgcaaagagagtattctttggaggcgagcgttttatagaaggaatat 25029

                 
Query: 396   cagg 399
             ||||
Sbjct: 25028 cagg 25025
to top
>emb|CR626910.5| Zebrafish DNA sequence from clone DKEY-204E20 in linkage group 14,
              complete sequence
          Length = 168298

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 450    tggaggttcagctgcatgttactg 473
              |||||||||||||||| |||||||
Sbjct: 152854 tggaggttcagctgcaggttactg 152831
to top
>emb|AL355862.16| Human DNA sequence from clone RP4-640E24 on chromosome 1q21.3-23.1
             Contains a pseudogene similar to the likely ortholog of
             mouse gene rich cluster C10 (GRCC10), complete sequence
          Length = 102512

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 331   caaacgagatgatgatggtg 350
             ||||||||||||||||||||
Sbjct: 55287 caaacgagatgatgatggtg 55306
to top
>emb|AL713915.10| Mouse DNA sequence from clone RP23-437C4 on chromosome 11 Contains part
              of the Odz2 gene for odd Oz/ten-m homolog 2 (Drosophila),
              complete sequence
          Length = 201133

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 222    tcatttatgttttcaagaaa 241
              ||||||||||||||||||||
Sbjct: 199374 tcatttatgttttcaagaaa 199393
to top
>emb|AL732293.14| Mouse DNA sequence from clone RP23-360J13 on chromosome 11,
           complete sequence
          Length = 117779

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 222 tcatttatgttttcaagaaa 241
           ||||||||||||||||||||
Sbjct: 241 tcatttatgttttcaagaaa 260
to top
>gb|AC103874.2| Homo sapiens chromosome 15, clone RP11-907B8, complete sequence
          Length = 158897

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 229   tgttttcaagaaattggaatggca 252
             ||||||| ||||||||||||||||
Sbjct: 47882 tgttttctagaaattggaatggca 47859
to top
>gb|AC090685.8| Homo sapiens chromosome 17, clone RP11-252O24, complete sequence
          Length = 171140

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     ttgcagatggcatgactgta 40
              ||||||||||||||||||||
Sbjct: 140524 ttgcagatggcatgactgta 140505
to top
>gb|AC018347.17| Homo sapiens chromosome 15 clone RP11-410F2, complete sequence
          Length = 149399

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 229   tgttttcaagaaattggaatggca 252
             ||||||| ||||||||||||||||
Sbjct: 69877 tgttttctagaaattggaatggca 69854
to top
>gb|AC182663.2| Populus trichocarpa clone Pop1-16M7, complete sequence
          Length = 77392

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 141   atctcgtactgtacacaaca 160
             ||||||||||||||||||||
Sbjct: 25206 atctcgtactgtacacaaca 25187
to top
>gb|AC026385.19|AC026385 Mus musculus 17 BAC RP23-413K14 complete sequence
          Length = 222610

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 254   tcactgtcagttgatctttt 273
             ||||||||||||||||||||
Sbjct: 65329 tcactgtcagttgatctttt 65348
to top
>ref|NM_058655.3| Caenorhabditis elegans W10C8.4a (W10C8.4) mRNA, complete cds
          Length = 731

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 caaacgaaaaatggcaggtt 178
           ||||||||||||||||||||
Sbjct: 191 caaacgaaaaatggcaggtt 210
to top
>gb|AC012323.7|AC012323 Homo sapiens chromosome 16 clone RP11-89O14, complete sequence
          Length = 176512

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    ttgcagatggcatgactgta 40
             ||||||||||||||||||||
Sbjct: 30904 ttgcagatggcatgactgta 30885
to top
>gb|AC073618.48| Homo sapiens 12 BAC RP11-313E9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 92909

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    ttgcagatggcatgactgta 40
             ||||||||||||||||||||
Sbjct: 32732 ttgcagatggcatgactgta 32713
to top
>gb|AC093610.2| Homo sapiens BAC clone RP11-725F23 from 2, complete sequence
          Length = 143604

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     ttgcagatggcatgactgta 40
              ||||||||||||||||||||
Sbjct: 117527 ttgcagatggcatgactgta 117508
to top
>gb|AC092378.4| Homo sapiens chromosome 16 clone RP11-700H13, complete sequence
          Length = 199868

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    ttgcagatggcatgactgta 40
             ||||||||||||||||||||
Sbjct: 56553 ttgcagatggcatgactgta 56572
to top
>gb|AC019105.7| Homo sapiens BAC clone RP11-475A8 from 2, complete sequence
          Length = 170491

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    ttgcagatggcatgactgta 40
             ||||||||||||||||||||
Sbjct: 68526 ttgcagatggcatgactgta 68545
to top
>gb|AF002223.2| Homo sapiens chromosome X multiple clones map q28, complete sequence
          Length = 209932

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    ttgcagatggcatgactgta 40
             ||||||||||||||||||||
Sbjct: 81001 ttgcagatggcatgactgta 80982
to top
>gb|AC092415.3| Homo sapiens chromosome 3 clone RP11-9A14, complete sequence
          Length = 181664

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     ttgcagatggcatgactgta 40
              ||||||||||||||||||||
Sbjct: 118391 ttgcagatggcatgactgta 118410
to top
>gb|AC055754.21| Homo sapiens 3 BAC RP11-4I2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 157354

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    ttgcagatggcatgactgta 40
             ||||||||||||||||||||
Sbjct: 19536 ttgcagatggcatgactgta 19555
to top
>emb|AL049874.3|CNS0000Q Human chromosome 14 DNA sequence BAC R-1042B17 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 193047

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    ttgcagatggcatgactgta 40
             ||||||||||||||||||||
Sbjct: 16358 ttgcagatggcatgactgta 16339
to top
>emb|AL049781.5|CNS00003 Human chromosome 14 DNA sequence BAC R-340L3 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 188165

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    ttgcagatggcatgactgta 40
             ||||||||||||||||||||
Sbjct: 95920 ttgcagatggcatgactgta 95939
to top
>gb|AC006050.1|AC006050 Homo sapiens chromosome 17, clone  hRPK.268_F_2, complete sequence
          Length = 162746

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    ttgcagatggcatgactgta 40
             ||||||||||||||||||||
Sbjct: 50996 ttgcagatggcatgactgta 50977
to top
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 299     gcacgatttaactcttcaag 318
               ||||||||||||||||||||
Sbjct: 2639850 gcacgatttaactcttcaag 2639869
to top
>emb|CT025760.12| Mouse DNA sequence from clone RP23-351E9 on chromosome 17, complete
             sequence
          Length = 128479

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 254   tcactgtcagttgatctttt 273
             ||||||||||||||||||||
Sbjct: 26913 tcactgtcagttgatctttt 26932
to top
>gb|AC130474.12| Mus musculus chromosome 7, clone RP23-178C20, complete sequence
          Length = 232792

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 173  caggttgtaaatttgaaaga 192
            ||||||||||||||||||||
Sbjct: 9635 caggttgtaaatttgaaaga 9616
to top
>gb|AC122767.16| Mus musculus chromosome 7, clone RP24-143L4, complete sequence
          Length = 192484

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   caggttgtaaatttgaaaga 192
             ||||||||||||||||||||
Sbjct: 28896 caggttgtaaatttgaaaga 28915
to top
>emb|AL607032.16| Mouse DNA sequence from clone RP23-15L19 on chromosome 4, complete
            sequence
          Length = 136416

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 462  tgcatgttactgaagctctc 481
            ||||||||||||||||||||
Sbjct: 3257 tgcatgttactgaagctctc 3238


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,628,944
Number of Sequences: 3902068
Number of extensions: 4628944
Number of successful extensions: 86693
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 86517
Number of HSP's gapped (non-prelim): 172
length of query: 502
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 480
effective length of database: 17,147,199,772
effective search space: 8230655890560
effective search space used: 8230655890560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top