ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl53c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y1618_THETN (Q8R9J2) UPF0078 membrane protein TTE1618 32 1.2
2METW_YEAST (Q12198) Putative cystathionine gamma-synthase YLL058... 30 4.4
3XDHA_ECOLI (Q46799) Xanthine dehydrogenase molybdenum-binding su... 28 9.7
4XDHA_ECO57 (Q8X6C7) Xanthine dehydrogenase molybdenum-binding su... 28 9.7

>Y1618_THETN (Q8R9J2) UPF0078 membrane protein TTE1618|
          Length = 198

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
 Frame = -2

Query: 468 VNVRCISMAILYLNIN---PERVQFLMDSCIMQVLVIVQH-DNIPILISVSENEVSIRAK 301
           V++  ++ AI +  +N   P  VQ L  + ++ +LVI QH  NI  LI+ +E+++  RA+
Sbjct: 137 VSLGSMTGAITFALLNIFFPNSVQVLTFAIVLALLVIFQHRSNIKRLINGTESKIGQRAQ 196

Query: 300 LK 295
           +K
Sbjct: 197 IK 198



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>METW_YEAST (Q12198) Putative cystathionine gamma-synthase YLL058W (EC|
           2.5.1.48) (O-succinylhomoserine (thiol)-lyase)
          Length = 575

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +1

Query: 208 DTLKRFNGYVNGTHFTLNLS----ALRSKIASAFKFGPDADFI 324
           D+LK F G  NGT+FTL       A  S++    KFG D + I
Sbjct: 502 DSLKVFKGPSNGTNFTLACPYVHLAHHSELEEVSKFGADPNII 544



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>XDHA_ECOLI (Q46799) Xanthine dehydrogenase molybdenum-binding subunit (EC|
           1.17.1.4)
          Length = 752

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = -1

Query: 169 AEDAAIVWRGGSILEETKLAAGNLGQ 92
           AEDAA +  GG++L+++ ++ GN+ Q
Sbjct: 136 AEDAAPIHNGGNLLKQSTMSTGNVQQ 161



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>XDHA_ECO57 (Q8X6C7) Xanthine dehydrogenase molybdenum-binding subunit (EC|
           1.17.1.4)
          Length = 752

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = -1

Query: 169 AEDAAIVWRGGSILEETKLAAGNLGQ 92
           AEDAA +  GG++L+++ ++ GN+ Q
Sbjct: 136 AEDAAPIHNGGNLLKQSTMSTGNVQQ 161


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,708,746
Number of Sequences: 219361
Number of extensions: 875421
Number of successful extensions: 2928
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2928
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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